Wall clock time and date at job start Tue Mar 31 2020 22:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30943 * 122.90821 * 2 1 4 4 C 1.29426 * 117.36970 * 180.34459 * 3 2 1 5 5 C 1.50699 * 124.80740 * 179.72879 * 4 3 2 6 6 C 1.52994 * 109.47152 * 59.97416 * 5 4 3 7 7 C 1.53008 * 109.47142 * 179.97438 * 5 4 3 8 8 C 1.52997 * 109.46831 * 299.97309 * 5 4 3 9 9 S 1.70959 * 110.38963 * 359.70744 * 4 3 2 10 10 C 1.35672 * 122.90802 * 179.79903 * 2 1 3 11 11 C 1.46682 * 126.12617 * 359.97322 * 10 2 1 12 12 O 1.21689 * 119.99724 * 359.70392 * 11 10 2 13 13 N 1.34773 * 120.00228 * 179.71573 * 11 10 2 14 14 C 1.46490 * 120.00384 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47559 * 179.97438 * 14 13 11 16 16 H 1.09008 * 109.46613 * 54.99525 * 15 14 13 17 17 C 1.53001 * 109.47108 * 295.00069 * 15 14 13 18 18 C 1.52996 * 109.47530 * 174.99686 * 15 14 13 19 19 N 1.46498 * 109.47059 * 184.99929 * 18 15 14 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 H 1.08997 * 109.47486 * 270.19222 * 1 2 3 29 29 H 1.08999 * 109.47086 * 30.20123 * 1 2 3 30 30 H 1.09007 * 109.46803 * 150.19358 * 1 2 3 31 31 H 1.08998 * 109.47479 * 60.00283 * 6 5 4 32 32 H 1.09007 * 109.47111 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47342 * 300.00152 * 6 5 4 34 34 H 1.09005 * 109.46851 * 60.00081 * 7 5 4 35 35 H 1.08998 * 109.46836 * 179.97438 * 7 5 4 36 36 H 1.08991 * 109.46830 * 300.00107 * 7 5 4 37 37 H 1.09003 * 109.47617 * 60.00304 * 8 5 4 38 38 H 1.09007 * 109.46921 * 179.97438 * 8 5 4 39 39 H 1.08996 * 109.47418 * 299.99647 * 8 5 4 40 40 H 0.97002 * 119.99300 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.47374 * 59.99359 * 14 13 11 42 42 H 1.09002 * 109.47263 * 299.99603 * 14 13 11 43 43 H 1.09001 * 109.46786 * 59.99727 * 17 15 14 44 44 H 1.09001 * 109.47309 * 179.97438 * 17 15 14 45 45 H 1.08995 * 109.46988 * 299.99895 * 17 15 14 46 46 H 1.09004 * 109.47066 * 65.00196 * 18 15 14 47 47 H 1.08994 * 109.46974 * 305.00344 * 18 15 14 48 48 H 0.97001 * 120.00384 * 0.02562 * 19 18 15 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2183 1.0993 0.0000 4 6 3.5065 0.9744 -0.0069 5 6 4.4821 2.1230 -0.0139 6 6 4.2691 2.9807 1.2349 7 6 5.9118 1.5778 -0.0204 8 6 4.2561 2.9764 -1.2635 9 16 3.9447 -0.6781 -0.0063 10 6 2.2440 -1.1390 0.0040 11 6 1.7192 -2.5087 0.0094 12 8 0.5174 -2.6997 0.0160 13 7 2.5679 -3.5556 0.0072 14 6 2.0438 -4.9236 0.0131 15 6 3.2082 -5.9160 0.0084 16 1 3.8720 -5.7012 0.8460 17 6 3.9843 -5.7856 -1.3037 18 6 2.6651 -7.3402 0.1404 19 7 3.7828 -8.2803 0.2559 20 6 3.5386 -9.6210 0.3910 21 1 2.5221 -9.9857 0.4079 22 6 4.5974 -10.5112 0.5063 23 7 5.8361 -10.0665 0.4863 24 14 4.2644 -12.3400 0.6899 25 1 2.7989 -12.5794 0.6831 26 1 4.8904 -13.0730 -0.4398 27 1 4.8391 -12.8216 1.9717 28 1 -0.3634 0.0034 1.0276 29 1 -0.3633 0.8882 -0.5169 30 1 -0.3633 -0.8918 -0.5109 31 1 4.4301 2.3728 2.1251 32 1 4.9744 3.8118 1.2296 33 1 3.2506 3.3691 1.2395 34 1 6.0635 0.9667 -0.9102 35 1 6.6174 2.4086 -0.0259 36 1 6.0727 0.9698 0.8698 37 1 3.2377 3.3648 -1.2590 38 1 4.9615 3.8074 -1.2684 39 1 4.4080 2.3653 -2.1532 40 1 3.5259 -3.4033 0.0017 41 1 1.4291 -5.0810 -0.8732 42 1 1.4388 -5.0770 0.9067 43 1 4.3712 -4.7709 -1.3976 44 1 4.8141 -6.4923 -1.3069 45 1 3.3205 -6.0003 -2.1412 46 1 2.0730 -7.5864 -0.7411 47 1 2.0388 -7.4093 1.0297 48 1 4.6957 -7.9527 0.2412 49 1 6.5760 -10.6886 0.5665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732372736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:05 Heat of formation + Delta-G solvation = -8.701229 kcal Electronic energy + Delta-G solvation = -26662.287907 eV Core-core repulsion = 22943.586773 eV Total energy + Delta-G solvation = -3718.701134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71182 -39.51834 -37.31682 -36.75283 -34.44728 -32.59163 -31.62779 -30.17486 -28.66745 -27.94839 -27.74835 -26.44074 -25.44418 -25.11979 -22.74034 -21.47124 -20.55352 -20.27414 -19.25287 -18.04319 -17.30050 -16.74286 -16.08727 -15.90649 -15.44331 -15.16877 -14.67590 -14.49435 -14.44847 -14.09733 -14.04189 -13.77439 -13.63527 -13.10281 -12.95725 -12.89634 -12.69821 -12.63995 -12.44955 -12.34469 -12.17179 -12.08266 -11.96311 -11.59643 -11.50923 -11.41833 -11.08707 -10.94437 -10.74020 -10.59978 -10.45717 -10.23290 -10.03543 -9.87026 -9.77356 -9.69022 -9.20583 -8.95596 -8.89568 -6.93782 -5.78572 -3.06975 -0.03235 0.86497 1.29404 2.18659 3.00074 3.00873 3.42635 3.48363 3.49040 3.50722 4.19415 4.36589 4.43715 4.57785 4.62386 4.76811 4.84791 5.03686 5.05881 5.12618 5.17605 5.26171 5.34026 5.35612 5.38694 5.39373 5.48838 5.52872 5.56352 5.62915 5.64493 5.76778 5.79451 5.81140 5.92115 5.93123 6.04824 6.12981 6.20813 6.34956 6.40410 6.62303 6.74367 6.83758 7.25660 7.39024 7.69866 8.00535 8.40577 9.51951 10.08946 10.43709 11.44497 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.002027 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.335242 B =13808.829794 C =14863.487763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.150 3.850 3 N -0.475 5.475 4 C 0.076 3.924 5 C 0.007 3.993 6 C -0.135 4.135 7 C -0.158 4.158 8 C -0.134 4.134 9 S 0.164 5.836 10 C -0.306 4.306 11 C 0.595 3.405 12 O -0.525 6.525 13 N -0.719 5.719 14 C 0.127 3.873 15 C -0.111 4.111 16 H 0.077 0.923 17 C -0.142 4.142 18 C 0.161 3.839 19 N -0.731 5.731 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.397 0.603 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.023 0.977 47 H 0.022 0.978 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 29.933 -1.996 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.013 3.987 3 N -0.189 5.189 4 C -0.200 4.200 5 C 0.003 3.997 6 C -0.193 4.193 7 C -0.216 4.216 8 C -0.193 4.193 9 S 0.423 5.577 10 C -0.429 4.429 11 C 0.381 3.619 12 O -0.404 6.404 13 N -0.370 5.370 14 C 0.004 3.996 15 C -0.131 4.131 16 H 0.095 0.905 17 C -0.199 4.199 18 C 0.033 3.967 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.232 0.768 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.039 0.961 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.833 29.543 -1.982 29.666 hybrid contribution -0.134 -0.913 0.152 0.936 sum -1.967 28.629 -1.830 28.755 Atomic orbital electron populations 1.20663 0.85977 1.04463 1.03714 1.20666 0.98612 0.84870 0.94595 1.65972 1.04273 1.31222 1.17399 1.27463 0.94262 0.97910 1.00347 1.19343 0.91291 0.90615 0.98421 1.21850 1.03094 0.99084 0.95308 1.22071 0.94327 1.02183 1.02989 1.21851 1.03072 0.99114 0.95287 1.83909 1.05118 1.02331 1.66303 1.25549 0.96547 0.99160 1.21664 1.16652 0.86174 0.82368 0.76743 1.90787 1.14206 1.84981 1.50378 1.45972 1.09577 1.06504 1.74923 1.21490 0.96650 0.78700 1.02759 1.21570 0.96313 0.95961 0.99212 0.90491 1.21800 1.01050 1.00525 0.96573 1.20567 0.91570 0.86487 0.98091 1.42345 1.03618 1.03024 1.88557 1.19287 0.92707 0.83184 1.41716 0.91070 1.24744 0.95229 0.98118 1.03024 1.69668 0.97423 1.33534 1.57682 0.86103 0.77323 0.85448 0.77248 1.20530 1.21882 1.21881 0.90115 0.90844 0.88108 0.92344 0.91331 0.91324 0.91591 0.90306 0.91570 0.91326 0.91333 0.92353 0.76790 0.90934 0.90935 0.94062 0.90995 0.92686 0.95902 0.96055 0.78208 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.69 36.00 0.35 -0.61 16 2 C 0.15 1.80 6.79 -83.89 -0.57 1.23 16 3 N -0.47 -5.27 10.48 -7.70 -0.08 -5.35 16 4 C 0.08 0.70 5.78 -13.29 -0.08 0.62 16 5 C 0.01 0.05 0.99 -155.66 -0.15 -0.11 16 6 C -0.13 -0.80 8.45 37.15 0.31 -0.48 16 7 C -0.16 -0.79 7.53 37.16 0.28 -0.51 16 8 C -0.13 -0.79 8.45 37.16 0.31 -0.47 16 9 S 0.16 1.50 20.68 -107.50 -2.22 -0.73 16 10 C -0.31 -3.68 6.48 -37.09 -0.24 -3.92 16 11 C 0.60 8.17 7.78 -12.85 -0.10 8.07 16 12 O -0.52 -8.48 14.27 5.20 0.07 -8.41 16 13 N -0.72 -9.00 5.28 -61.62 -0.33 -9.33 16 14 C 0.13 1.76 5.06 -4.05 -0.02 1.74 16 15 C -0.11 -1.71 2.46 -90.62 -0.22 -1.93 16 16 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 17 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 18 C 0.16 3.17 5.65 -4.04 -0.02 3.14 16 19 N -0.73 -18.19 5.33 -59.91 -0.32 -18.51 16 20 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 24 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.21 6.02 -51.92 -0.31 0.90 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.34 7.92 -51.93 -0.41 -0.08 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.40 4.31 6.84 -40.82 -0.28 4.03 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.50 7.18 -51.93 -0.37 0.12 16 44 H 0.07 1.23 7.18 -51.93 -0.37 0.86 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 407.69 15.07 6.14 6.14 Total: -1.00 -32.37 407.69 -9.42 -41.79 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.33 Total: 6.61 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.07 Total: -2.31 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.00 Total: -60.49 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.22 Total: -0.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.37 -9.42 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732372736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.089 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds