Wall clock time and date at job start Tue Mar 31 2020 22:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30943 * 122.90821 * 2 1 4 4 C 1.29426 * 117.36970 * 180.34459 * 3 2 1 5 5 C 1.50699 * 124.80740 * 179.72879 * 4 3 2 6 6 C 1.52994 * 109.47152 * 59.97416 * 5 4 3 7 7 C 1.53008 * 109.47142 * 179.97438 * 5 4 3 8 8 C 1.52997 * 109.46831 * 299.97309 * 5 4 3 9 9 S 1.70959 * 110.38963 * 359.70744 * 4 3 2 10 10 C 1.35672 * 122.90802 * 179.79903 * 2 1 3 11 11 C 1.46682 * 126.12617 * 359.97322 * 10 2 1 12 12 O 1.21689 * 119.99724 * 359.70392 * 11 10 2 13 13 N 1.34773 * 120.00228 * 179.71573 * 11 10 2 14 14 C 1.46490 * 120.00384 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47559 * 179.97438 * 14 13 11 16 16 H 1.09008 * 109.46613 * 54.99525 * 15 14 13 17 17 C 1.53001 * 109.47108 * 295.00069 * 15 14 13 18 18 C 1.52996 * 109.47530 * 174.99686 * 15 14 13 19 19 N 1.46498 * 109.47059 * 184.99929 * 18 15 14 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 H 1.08997 * 109.47486 * 270.19222 * 1 2 3 29 29 H 1.08999 * 109.47086 * 30.20123 * 1 2 3 30 30 H 1.09007 * 109.46803 * 150.19358 * 1 2 3 31 31 H 1.08998 * 109.47479 * 60.00283 * 6 5 4 32 32 H 1.09007 * 109.47111 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47342 * 300.00152 * 6 5 4 34 34 H 1.09005 * 109.46851 * 60.00081 * 7 5 4 35 35 H 1.08998 * 109.46836 * 179.97438 * 7 5 4 36 36 H 1.08991 * 109.46830 * 300.00107 * 7 5 4 37 37 H 1.09003 * 109.47617 * 60.00304 * 8 5 4 38 38 H 1.09007 * 109.46921 * 179.97438 * 8 5 4 39 39 H 1.08996 * 109.47418 * 299.99647 * 8 5 4 40 40 H 0.97002 * 119.99300 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.47374 * 59.99359 * 14 13 11 42 42 H 1.09002 * 109.47263 * 299.99603 * 14 13 11 43 43 H 1.09001 * 109.46786 * 59.99727 * 17 15 14 44 44 H 1.09001 * 109.47309 * 179.97438 * 17 15 14 45 45 H 1.08995 * 109.46988 * 299.99895 * 17 15 14 46 46 H 1.09004 * 109.47066 * 65.00196 * 18 15 14 47 47 H 1.08994 * 109.46974 * 305.00344 * 18 15 14 48 48 H 0.97001 * 120.00384 * 0.02562 * 19 18 15 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2183 1.0993 0.0000 4 6 3.5065 0.9744 -0.0069 5 6 4.4821 2.1230 -0.0139 6 6 4.2691 2.9807 1.2349 7 6 5.9118 1.5778 -0.0204 8 6 4.2561 2.9764 -1.2635 9 16 3.9447 -0.6781 -0.0063 10 6 2.2440 -1.1390 0.0040 11 6 1.7192 -2.5087 0.0094 12 8 0.5174 -2.6997 0.0160 13 7 2.5679 -3.5556 0.0072 14 6 2.0438 -4.9236 0.0131 15 6 3.2082 -5.9160 0.0084 16 1 3.8720 -5.7012 0.8460 17 6 3.9843 -5.7856 -1.3037 18 6 2.6651 -7.3402 0.1404 19 7 3.7828 -8.2803 0.2559 20 6 3.5386 -9.6210 0.3910 21 1 2.5221 -9.9857 0.4079 22 6 4.5974 -10.5112 0.5063 23 7 5.8361 -10.0665 0.4863 24 14 4.2644 -12.3400 0.6899 25 1 2.7989 -12.5794 0.6831 26 1 4.8904 -13.0730 -0.4398 27 1 4.8391 -12.8216 1.9717 28 1 -0.3634 0.0034 1.0276 29 1 -0.3633 0.8882 -0.5169 30 1 -0.3633 -0.8918 -0.5109 31 1 4.4301 2.3728 2.1251 32 1 4.9744 3.8118 1.2296 33 1 3.2506 3.3691 1.2395 34 1 6.0635 0.9667 -0.9102 35 1 6.6174 2.4086 -0.0259 36 1 6.0727 0.9698 0.8698 37 1 3.2377 3.3648 -1.2590 38 1 4.9615 3.8074 -1.2684 39 1 4.4080 2.3653 -2.1532 40 1 3.5259 -3.4033 0.0017 41 1 1.4291 -5.0810 -0.8732 42 1 1.4388 -5.0770 0.9067 43 1 4.3712 -4.7709 -1.3976 44 1 4.8141 -6.4923 -1.3069 45 1 3.3205 -6.0003 -2.1412 46 1 2.0730 -7.5864 -0.7411 47 1 2.0388 -7.4093 1.0297 48 1 4.6957 -7.9527 0.2412 49 1 6.5760 -10.6886 0.5665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732372736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:05 Heat of formation + Delta-G solvation = -29.151532 kcal Electronic energy + Delta-G solvation = -26663.174699 eV Core-core repulsion = 22943.586773 eV Total energy + Delta-G solvation = -3719.587925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58170 -40.50793 -38.33560 -37.70051 -36.03221 -34.20955 -32.49471 -31.95142 -29.66050 -28.35776 -28.19523 -27.72732 -26.92434 -26.01688 -24.47190 -22.59494 -21.62284 -21.09897 -20.33486 -19.13222 -18.83064 -17.84773 -17.16898 -16.86969 -16.60811 -16.23247 -15.98452 -15.53997 -15.46588 -15.27250 -15.03013 -14.87240 -14.72751 -14.47456 -14.16471 -13.70106 -13.66822 -13.58318 -13.55473 -13.14433 -12.99282 -12.96528 -12.83687 -12.61789 -12.54207 -12.32396 -12.21177 -12.13964 -12.02578 -11.98696 -11.93886 -11.73670 -11.67811 -11.21658 -10.95740 -10.72892 -10.61466 -10.23320 -9.79212 -8.99544 -7.95866 -5.23992 -0.86132 0.09366 0.49524 1.31269 1.47889 1.47990 1.58334 1.95242 2.01430 2.56199 2.81317 3.38057 3.60764 3.63339 3.71470 3.90082 3.91202 3.92740 4.00185 4.05278 4.23777 4.33476 4.50733 4.62787 4.66610 4.67273 4.69452 4.72876 4.73436 4.83645 4.84146 4.91365 4.95340 4.95994 4.99909 5.02071 5.10291 5.16400 5.23493 5.30219 5.34693 5.34763 5.38853 5.44131 5.50349 6.26152 6.28564 6.55198 6.97149 7.33940 8.08816 8.33036 9.27788 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.002027 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.335242 B =13808.829794 C =14863.487763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 N -0.493 5.493 4 C 0.078 3.922 5 C 0.004 3.996 6 C -0.132 4.132 7 C -0.158 4.158 8 C -0.132 4.132 9 S 0.206 5.794 10 C -0.336 4.336 11 C 0.596 3.404 12 O -0.556 6.556 13 N -0.711 5.711 14 C 0.139 3.861 15 C -0.096 4.096 16 H 0.078 0.922 17 C -0.137 4.137 18 C 0.158 3.842 19 N -0.741 5.741 20 C -0.244 4.244 21 H 0.074 0.926 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.268 1.268 26 H -0.293 1.293 27 H -0.293 1.293 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.407 0.593 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.024 0.976 47 H 0.021 0.979 48 H 0.377 0.623 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 31.366 -2.102 31.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 N -0.207 5.207 4 C -0.197 4.197 5 C 0.000 4.000 6 C -0.191 4.191 7 C -0.216 4.216 8 C -0.191 4.191 9 S 0.467 5.533 10 C -0.460 4.460 11 C 0.382 3.618 12 O -0.436 6.436 13 N -0.362 5.362 14 C 0.015 3.985 15 C -0.115 4.115 16 H 0.096 0.904 17 C -0.194 4.194 18 C 0.031 3.969 19 N -0.385 5.385 20 C -0.376 4.376 21 H 0.092 0.908 22 C -0.268 4.268 23 N -0.618 5.618 24 Si 0.802 3.198 25 H -0.192 1.192 26 H -0.220 1.220 27 H -0.220 1.220 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.243 0.757 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.039 0.961 48 H 0.209 0.791 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.073 30.991 -2.092 31.080 hybrid contribution -0.370 -1.237 0.181 1.303 sum -1.443 29.755 -1.911 29.851 Atomic orbital electron populations 1.20614 0.85821 1.04258 1.03814 1.20880 0.99167 0.85245 0.94188 1.66034 1.05095 1.30923 1.18674 1.28139 0.94298 0.98994 0.98237 1.19574 0.91460 0.89901 0.99044 1.21848 1.02944 0.99581 0.94735 1.22115 0.93496 1.03016 1.03010 1.21848 1.02925 0.99608 0.94700 1.83680 1.02496 1.01716 1.65443 1.25455 0.98656 0.98240 1.23637 1.16853 0.85816 0.83079 0.76029 1.90769 1.15490 1.85581 1.51808 1.45816 1.10015 1.05743 1.74661 1.21245 0.95723 0.78987 1.02561 1.21350 0.96701 0.93679 0.99737 0.90366 1.21736 1.00012 1.01616 0.96030 1.20711 0.90314 0.88068 0.97856 1.42512 1.04558 1.02982 1.88417 1.19664 0.92824 0.84723 1.40423 0.90787 1.25544 0.95161 1.02325 1.03731 1.69809 0.98110 1.34691 1.59229 0.85085 0.77674 0.80354 0.76714 1.19225 1.21991 1.22010 0.89850 0.89625 0.89595 0.92712 0.89069 0.92685 0.91512 0.88219 0.91577 0.92679 0.89080 0.92641 0.75683 0.91033 0.91391 0.91071 0.93554 0.92686 0.95825 0.96063 0.79074 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.69 71.23 0.69 -1.18 16 2 C 0.14 3.40 6.79 42.09 0.29 3.69 16 3 N -0.49 -10.59 10.48 -178.28 -1.87 -12.46 16 4 C 0.08 1.34 5.78 88.46 0.51 1.85 16 5 C 0.00 0.05 0.99 -52.93 -0.05 -0.01 16 6 C -0.13 -1.30 8.45 71.98 0.61 -0.69 16 7 C -0.16 -1.14 7.53 71.98 0.54 -0.59 16 8 C -0.13 -1.27 8.45 71.98 0.61 -0.66 16 9 S 0.21 3.43 20.68 -56.49 -1.17 2.26 16 10 C -0.34 -7.89 6.48 23.88 0.15 -7.74 16 11 C 0.60 16.12 7.78 86.45 0.67 16.79 16 12 O -0.56 -18.13 14.27 -4.31 -0.06 -18.19 16 13 N -0.71 -17.03 5.28 -467.10 -2.47 -19.49 16 14 C 0.14 3.71 5.06 86.38 0.44 4.14 16 15 C -0.10 -2.85 2.46 -10.79 -0.03 -2.88 16 16 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 17 C -0.14 -3.87 8.94 71.98 0.64 -3.23 16 18 C 0.16 6.15 5.65 86.38 0.49 6.64 16 19 N -0.74 -37.06 5.33 -343.46 -1.83 -38.89 16 20 C -0.24 -13.64 9.99 84.03 0.84 -12.80 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 23 N -0.97 -58.60 13.06 21.65 0.28 -58.31 16 24 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 2.14 6.02 -2.38 -0.01 2.12 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.48 7.92 -2.38 -0.02 0.46 16 35 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.07 0.49 7.92 -2.39 -0.02 0.47 16 37 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.41 8.11 6.84 -92.71 -0.63 7.48 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 1.57 7.18 -2.39 -0.02 1.55 16 44 H 0.05 1.57 7.18 -2.39 -0.02 1.55 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.38 19.72 6.85 -92.71 -0.64 19.09 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -69.47 407.69 1.47 -68.01 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.32 Total: 29.43 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.87 Total: -0.52 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -5.88 Total: -129.15 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.06 Total: -18.19 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.17 Total: 2.26 kcal Total: -69.47 1.47 -68.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732372736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.855 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds