Wall clock time and date at job start Tue Mar 31 2020 23:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46838 * 2 1 4 4 N 1.29428 * 124.80529 * 90.03273 * 3 2 1 5 5 C 1.30935 * 117.36588 * 180.02562 * 4 3 2 6 6 C 1.50706 * 122.90559 * 180.02562 * 5 4 3 7 7 C 1.35667 * 114.19444 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.13196 * 180.02562 * 7 5 4 9 9 O 1.21687 * 120.00233 * 0.02562 * 8 7 5 10 10 N 1.34783 * 119.99866 * 180.02562 * 8 7 5 11 11 C 1.46490 * 119.99824 * 184.43244 * 10 8 7 12 12 H 1.09000 * 109.47671 * 34.34740 * 11 10 8 13 13 C 1.53002 * 109.47205 * 154.34753 * 11 10 8 14 14 N 1.46499 * 109.46878 * 305.00349 * 13 11 10 15 15 C 1.36943 * 119.99339 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00677 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99445 * 179.72083 * 15 14 13 18 18 N 1.31615 * 119.99764 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99840 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47153 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46872 * 119.99798 * 19 17 15 22 22 H 1.48493 * 109.47315 * 240.00025 * 19 17 15 23 23 C 1.53004 * 109.47229 * 274.34873 * 11 10 8 24 24 C 1.53000 * 109.47078 * 176.05503 * 23 11 10 25 25 C 1.53003 * 109.47129 * 174.29256 * 24 23 11 26 26 C 1.53000 * 109.46979 * 294.29097 * 24 23 11 27 27 S 1.70958 * 124.80399 * 270.33885 * 3 2 1 28 28 H 1.09004 * 109.46553 * 299.99460 * 1 2 3 29 29 H 1.08993 * 109.47145 * 59.99798 * 1 2 3 30 30 H 1.09000 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46879 * 240.00105 * 2 1 3 32 32 H 1.08993 * 109.47145 * 120.00202 * 2 1 3 33 33 H 1.08994 * 109.47149 * 269.95953 * 6 5 4 34 34 H 1.08999 * 109.46860 * 29.95601 * 6 5 4 35 35 H 1.08998 * 109.47196 * 149.95596 * 6 5 4 36 36 H 0.97001 * 119.99724 * 4.43180 * 10 8 7 37 37 H 1.08994 * 109.47201 * 184.99625 * 13 11 10 38 38 H 1.09006 * 109.46878 * 64.99945 * 13 11 10 39 39 H 0.96991 * 120.00513 * 359.97438 * 14 13 11 40 40 H 0.97010 * 119.99493 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.46750 * 296.05538 * 23 11 10 42 42 H 1.09000 * 109.46811 * 56.05692 * 23 11 10 43 43 H 1.09001 * 109.47325 * 54.29393 * 24 23 11 44 44 H 1.09001 * 109.46905 * 59.99880 * 25 24 23 45 45 H 1.08990 * 109.47198 * 179.97438 * 25 24 23 46 46 H 1.08995 * 109.47075 * 300.00091 * 25 24 23 47 47 H 1.08997 * 109.47208 * 298.23770 * 26 24 23 48 48 H 1.08998 * 109.47446 * 58.24142 * 26 24 23 49 49 H 1.09000 * 109.47187 * 178.24180 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2791 2.1172 1.0627 5 6 2.7112 3.3415 0.8932 6 6 3.0375 4.2610 2.0418 7 6 2.8410 3.7104 -0.4059 8 6 3.3019 5.0151 -0.8925 9 8 3.6106 5.8857 -0.1003 10 7 3.3836 5.2497 -2.2173 11 6 3.9351 6.5165 -2.7041 12 1 4.7273 6.8496 -2.0335 13 6 4.5066 6.3175 -4.1093 14 7 5.4823 5.2248 -4.0894 15 6 6.1285 4.8629 -5.2412 16 1 5.9186 5.3826 -6.1643 17 6 7.0572 3.8313 -5.2212 18 7 7.3162 3.2009 -4.0953 19 14 7.9382 3.3371 -6.7925 20 1 7.4717 4.1940 -7.9120 21 1 9.4023 3.5099 -6.6143 22 1 7.6414 1.9151 -7.1001 23 6 2.8277 7.5714 -2.7486 24 6 3.4230 8.9186 -3.1627 25 6 2.2976 9.9389 -3.3454 26 6 4.3831 9.4074 -2.0763 27 16 2.3497 2.3436 -1.4037 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.1474 4.8253 2.3196 34 1 3.3747 3.6716 2.8945 35 1 3.8264 4.9509 1.7422 36 1 3.0771 4.5797 -2.8482 37 1 4.9955 7.2352 -4.4361 38 1 3.6989 6.0708 -4.7985 39 1 5.6705 4.7577 -3.2604 40 1 7.9655 2.4803 -4.0812 41 1 2.0693 7.2716 -3.4718 42 1 2.3732 7.6628 -1.7621 43 1 3.9649 8.8033 -4.1014 44 1 1.7558 10.0542 -2.4067 45 1 2.7217 10.8988 -3.6399 46 1 1.6137 9.5907 -4.1193 47 1 3.8349 9.5527 -1.1455 48 1 5.1675 8.6660 -1.9241 49 1 4.8309 10.3519 -2.3853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732469409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:45 Heat of formation + Delta-G solvation = -10.244495 kcal Electronic energy + Delta-G solvation = -27768.121863 eV Core-core repulsion = 24049.353808 eV Total energy + Delta-G solvation = -3718.768055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.31607 -39.25876 -37.19439 -34.86853 -34.38576 -33.57124 -31.28354 -30.82472 -29.44420 -27.76522 -27.01985 -25.59951 -25.54781 -23.06165 -22.21251 -21.95622 -20.85403 -19.58559 -19.24270 -17.89005 -17.24022 -16.61996 -15.89694 -15.50175 -15.28744 -14.83620 -14.51600 -14.38183 -14.33798 -13.76691 -13.61735 -13.54460 -13.41179 -13.23634 -12.98669 -12.79724 -12.51592 -12.28477 -12.16994 -12.02913 -11.93254 -11.85810 -11.66689 -11.41755 -11.25812 -11.12234 -10.90371 -10.79491 -10.78157 -10.46342 -10.24783 -10.01446 -9.89156 -9.77609 -9.54723 -9.42566 -8.94600 -8.79630 -8.58434 -6.98693 -5.80511 -3.10619 0.30679 1.22699 1.64551 2.50421 3.29483 3.39859 3.43013 3.45980 3.48100 3.91243 4.54360 4.68152 4.88579 4.91434 4.94524 5.00040 5.05795 5.09620 5.20894 5.34099 5.42706 5.52370 5.55011 5.55171 5.65247 5.73340 5.74077 5.75906 5.83152 5.84085 5.91348 5.92032 5.94785 6.00883 6.09652 6.16880 6.20329 6.33738 6.36944 6.44588 6.49645 6.58731 6.69275 6.89162 7.61657 7.66119 7.76675 8.36586 8.39057 9.48850 10.04338 10.39659 11.41693 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007092 B = 0.004365 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3947.060483 B = 6413.752668 C = 9305.121468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C 0.055 3.945 4 N -0.479 5.479 5 C 0.143 3.857 6 C -0.087 4.087 7 C -0.294 4.294 8 C 0.599 3.401 9 O -0.529 6.529 10 N -0.705 5.705 11 C 0.137 3.863 12 H 0.093 0.907 13 C 0.144 3.856 14 N -0.732 5.732 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.120 4.120 24 C -0.097 4.097 25 C -0.144 4.144 26 C -0.148 4.148 27 S 0.180 5.820 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.401 0.599 37 H 0.038 0.962 38 H 0.023 0.977 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 0.865 7.449 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.220 4.220 4 N -0.194 5.194 5 C 0.005 3.995 6 C -0.146 4.146 7 C -0.418 4.418 8 C 0.384 3.616 9 O -0.409 6.409 10 N -0.355 5.355 11 C 0.033 3.967 12 H 0.111 0.889 13 C 0.016 3.984 14 N -0.377 5.377 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.159 4.159 24 C -0.116 4.116 25 C -0.201 4.201 26 C -0.205 4.205 27 S 0.438 5.562 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.235 0.765 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.084 1.013 7.192 16.742 hybrid contribution 0.756 -0.414 -0.285 0.908 sum -14.328 0.599 6.908 15.918 Atomic orbital electron populations 1.21777 0.93336 1.02647 1.02734 1.20292 0.96771 0.87361 1.04692 1.27371 1.01197 1.01846 0.91568 1.66049 1.16086 1.05865 1.31413 1.20604 0.94795 0.90481 0.93635 1.20628 1.03447 0.97008 0.93477 1.25528 1.18248 1.00805 0.97220 1.16629 0.77480 0.84697 0.82763 1.90745 1.50321 1.44855 1.54949 1.45882 1.63588 1.20143 1.05899 1.21404 0.95570 0.82338 0.97380 0.88911 1.21035 0.92504 0.92990 0.91916 1.42369 1.47028 1.38133 1.10127 1.19250 1.16522 1.13134 0.88449 0.91072 1.24744 0.99980 0.99021 0.96951 1.69684 1.37461 1.25900 1.24735 0.86139 0.79481 0.78026 0.82657 1.20537 1.21864 1.21861 1.21973 0.97927 0.94134 1.01858 1.21133 0.96520 0.94163 0.99736 1.21820 0.98315 0.98686 1.01319 1.21872 0.99448 1.00865 0.98322 1.84101 1.57215 1.04167 1.10682 0.91938 0.92272 0.91252 0.89221 0.88547 0.90469 0.91025 0.88052 0.76456 0.94407 0.95892 0.78071 0.93529 0.91924 0.91496 0.90386 0.93008 0.92886 0.92899 0.92861 0.92027 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.05 -0.46 6.51 -27.88 -0.18 -0.64 16 3 C 0.06 0.71 6.64 -13.29 -0.09 0.62 16 4 N -0.48 -7.09 10.50 -7.70 -0.08 -7.17 16 5 C 0.14 2.23 6.79 -83.89 -0.57 1.66 16 6 C -0.09 -1.20 9.70 36.01 0.35 -0.85 16 7 C -0.29 -4.74 6.48 -37.10 -0.24 -4.98 16 8 C 0.60 10.49 7.74 -12.85 -0.10 10.39 16 9 O -0.53 -10.04 13.97 5.20 0.07 -9.97 16 10 N -0.71 -11.87 4.50 -55.12 -0.25 -12.12 16 11 C 0.14 2.30 2.04 -67.93 -0.14 2.16 16 12 H 0.09 1.74 5.86 -51.93 -0.30 1.43 16 13 C 0.14 2.75 5.43 -4.04 -0.02 2.73 16 14 N -0.73 -17.93 5.43 -59.91 -0.33 -18.26 16 15 C -0.24 -6.59 9.99 -15.05 -0.15 -6.75 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 19 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C -0.12 -1.66 4.45 -26.73 -0.12 -1.78 16 24 C -0.10 -1.22 2.78 -90.62 -0.25 -1.47 16 25 C -0.14 -1.53 9.19 37.16 0.34 -1.18 16 26 C -0.15 -1.91 9.00 37.16 0.33 -1.57 16 27 S 0.18 2.46 22.31 -107.50 -2.40 0.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.55 6.01 -51.93 -0.31 1.24 16 36 H 0.40 6.58 7.80 -40.82 -0.32 6.27 16 37 H 0.04 0.73 6.66 -51.93 -0.35 0.38 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.39 10.18 7.33 -40.82 -0.30 9.88 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.03 6.38 -51.93 -0.33 0.70 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.90 6.43 -51.93 -0.33 0.56 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -31.55 407.55 -9.84 -41.38 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.13 Total: 12.73 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.56 Total: -2.78 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 0.07 Total: -64.58 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.40 Total: 0.06 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.55 -9.84 -41.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732469409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.137 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds