Wall clock time and date at job start Tue Mar 31 2020 23:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46838 * 2 1 4 4 N 1.29428 * 124.80529 * 90.03273 * 3 2 1 5 5 C 1.30935 * 117.36588 * 180.02562 * 4 3 2 6 6 C 1.50706 * 122.90559 * 180.02562 * 5 4 3 7 7 C 1.35667 * 114.19444 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.13196 * 180.02562 * 7 5 4 9 9 O 1.21687 * 120.00233 * 0.02562 * 8 7 5 10 10 N 1.34783 * 119.99866 * 180.02562 * 8 7 5 11 11 C 1.46490 * 119.99824 * 184.43244 * 10 8 7 12 12 H 1.09000 * 109.47671 * 34.34740 * 11 10 8 13 13 C 1.53002 * 109.47205 * 154.34753 * 11 10 8 14 14 N 1.46499 * 109.46878 * 305.00349 * 13 11 10 15 15 C 1.36943 * 119.99339 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00677 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99445 * 179.72083 * 15 14 13 18 18 N 1.31615 * 119.99764 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99840 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47153 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46872 * 119.99798 * 19 17 15 22 22 H 1.48493 * 109.47315 * 240.00025 * 19 17 15 23 23 C 1.53004 * 109.47229 * 274.34873 * 11 10 8 24 24 C 1.53000 * 109.47078 * 176.05503 * 23 11 10 25 25 C 1.53003 * 109.47129 * 174.29256 * 24 23 11 26 26 C 1.53000 * 109.46979 * 294.29097 * 24 23 11 27 27 S 1.70958 * 124.80399 * 270.33885 * 3 2 1 28 28 H 1.09004 * 109.46553 * 299.99460 * 1 2 3 29 29 H 1.08993 * 109.47145 * 59.99798 * 1 2 3 30 30 H 1.09000 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46879 * 240.00105 * 2 1 3 32 32 H 1.08993 * 109.47145 * 120.00202 * 2 1 3 33 33 H 1.08994 * 109.47149 * 269.95953 * 6 5 4 34 34 H 1.08999 * 109.46860 * 29.95601 * 6 5 4 35 35 H 1.08998 * 109.47196 * 149.95596 * 6 5 4 36 36 H 0.97001 * 119.99724 * 4.43180 * 10 8 7 37 37 H 1.08994 * 109.47201 * 184.99625 * 13 11 10 38 38 H 1.09006 * 109.46878 * 64.99945 * 13 11 10 39 39 H 0.96991 * 120.00513 * 359.97438 * 14 13 11 40 40 H 0.97010 * 119.99493 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.46750 * 296.05538 * 23 11 10 42 42 H 1.09000 * 109.46811 * 56.05692 * 23 11 10 43 43 H 1.09001 * 109.47325 * 54.29393 * 24 23 11 44 44 H 1.09001 * 109.46905 * 59.99880 * 25 24 23 45 45 H 1.08990 * 109.47198 * 179.97438 * 25 24 23 46 46 H 1.08995 * 109.47075 * 300.00091 * 25 24 23 47 47 H 1.08997 * 109.47208 * 298.23770 * 26 24 23 48 48 H 1.08998 * 109.47446 * 58.24142 * 26 24 23 49 49 H 1.09000 * 109.47187 * 178.24180 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2791 2.1172 1.0627 5 6 2.7112 3.3415 0.8932 6 6 3.0375 4.2610 2.0418 7 6 2.8410 3.7104 -0.4059 8 6 3.3019 5.0151 -0.8925 9 8 3.6106 5.8857 -0.1003 10 7 3.3836 5.2497 -2.2173 11 6 3.9351 6.5165 -2.7041 12 1 4.7273 6.8496 -2.0335 13 6 4.5066 6.3175 -4.1093 14 7 5.4823 5.2248 -4.0894 15 6 6.1285 4.8629 -5.2412 16 1 5.9186 5.3826 -6.1643 17 6 7.0572 3.8313 -5.2212 18 7 7.3162 3.2009 -4.0953 19 14 7.9382 3.3371 -6.7925 20 1 7.4717 4.1940 -7.9120 21 1 9.4023 3.5099 -6.6143 22 1 7.6414 1.9151 -7.1001 23 6 2.8277 7.5714 -2.7486 24 6 3.4230 8.9186 -3.1627 25 6 2.2976 9.9389 -3.3454 26 6 4.3831 9.4074 -2.0763 27 16 2.3497 2.3436 -1.4037 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.1474 4.8253 2.3196 34 1 3.3747 3.6716 2.8945 35 1 3.8264 4.9509 1.7422 36 1 3.0771 4.5797 -2.8482 37 1 4.9955 7.2352 -4.4361 38 1 3.6989 6.0708 -4.7985 39 1 5.6705 4.7577 -3.2604 40 1 7.9655 2.4803 -4.0812 41 1 2.0693 7.2716 -3.4718 42 1 2.3732 7.6628 -1.7621 43 1 3.9649 8.8033 -4.1014 44 1 1.7558 10.0542 -2.4067 45 1 2.7217 10.8988 -3.6399 46 1 1.6137 9.5907 -4.1193 47 1 3.8349 9.5527 -1.1455 48 1 5.1675 8.6660 -1.9241 49 1 4.8309 10.3519 -2.3853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732469409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:45 Heat of formation + Delta-G solvation = -29.630693 kcal Electronic energy + Delta-G solvation = -27768.962512 eV Core-core repulsion = 24049.353808 eV Total energy + Delta-G solvation = -3719.608703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53556 -40.52348 -38.49103 -36.36423 -35.26672 -35.18271 -33.05743 -31.91306 -30.89120 -28.96618 -28.00161 -27.23280 -26.45553 -24.69750 -23.69882 -22.87612 -22.13077 -20.79538 -20.49289 -19.15803 -19.01624 -17.96135 -17.18688 -16.87077 -16.61389 -16.05321 -15.88489 -15.63563 -15.36314 -15.22701 -15.03460 -14.80575 -14.56005 -14.42954 -14.24203 -14.00283 -13.83934 -13.51208 -13.36637 -13.15955 -12.95413 -12.94119 -12.80411 -12.64257 -12.58228 -12.39505 -12.20127 -12.09069 -12.02241 -11.90918 -11.77617 -11.55752 -11.37373 -11.14296 -10.96232 -10.73952 -10.59606 -10.09637 -9.75308 -9.01725 -7.94255 -5.24283 -0.83367 0.12365 0.52256 1.32618 1.47964 1.48948 1.58649 1.97328 2.12747 2.55817 2.92150 3.40289 3.62701 3.75543 3.77408 3.89391 4.02112 4.07114 4.17541 4.18540 4.20961 4.27245 4.38393 4.54997 4.56590 4.67312 4.74664 4.77751 4.81993 4.84222 4.89182 4.93041 4.97999 4.99331 5.04053 5.05183 5.10975 5.13222 5.27046 5.32432 5.35075 5.45893 5.49525 5.52040 5.56378 6.25791 6.34865 6.54764 7.03433 7.33265 8.05496 8.29743 9.28921 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007092 B = 0.004365 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3947.060483 B = 6413.752668 C = 9305.121468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C 0.069 3.931 4 N -0.497 5.497 5 C 0.140 3.860 6 C -0.083 4.083 7 C -0.329 4.329 8 C 0.596 3.404 9 O -0.552 6.552 10 N -0.705 5.705 11 C 0.146 3.854 12 H 0.069 0.931 13 C 0.146 3.854 14 N -0.743 5.743 15 C -0.242 4.242 16 H 0.080 0.920 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.298 1.298 22 H -0.293 1.293 23 C -0.108 4.108 24 C -0.095 4.095 25 C -0.139 4.139 26 C -0.146 4.146 27 S 0.191 5.809 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.402 0.598 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.037 0.963 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.779 0.607 6.413 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 C -0.206 4.206 4 N -0.212 5.212 5 C 0.002 3.998 6 C -0.142 4.142 7 C -0.453 4.453 8 C 0.383 3.617 9 O -0.433 6.433 10 N -0.354 5.354 11 C 0.042 3.958 12 H 0.087 0.913 13 C 0.020 3.980 14 N -0.386 5.386 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.800 3.200 20 H -0.188 1.188 21 H -0.226 1.226 22 H -0.220 1.220 23 C -0.147 4.147 24 C -0.114 4.114 25 C -0.196 4.196 26 C -0.203 4.203 27 S 0.450 5.550 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.237 0.763 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.204 0.796 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.681 0.794 6.119 17.785 hybrid contribution 1.192 -0.356 0.074 1.246 sum -15.489 0.438 6.193 16.687 Atomic orbital electron populations 1.21772 0.91804 1.04159 1.02322 1.20578 0.97919 0.84928 1.06012 1.28155 0.98799 1.02916 0.90717 1.66136 1.17355 1.05702 1.32038 1.20909 0.94021 0.91020 0.93888 1.20603 1.03375 0.96760 0.93469 1.25456 1.20492 1.01202 0.98130 1.16839 0.77093 0.85145 0.82651 1.90720 1.51438 1.45806 1.55378 1.45863 1.63430 1.20231 1.05883 1.21269 0.96064 0.83188 0.95298 0.91269 1.21162 0.91731 0.91487 0.93659 1.42544 1.47909 1.39247 1.08931 1.19657 1.15846 1.12455 0.89401 0.90216 1.25525 1.01373 0.99642 0.99813 1.69846 1.38455 1.26694 1.26866 0.85111 0.77658 0.77572 0.79626 1.18827 1.22562 1.21990 1.21882 0.96981 0.93858 1.01978 1.21136 0.97149 0.94020 0.99123 1.21771 0.97573 0.98422 1.01848 1.21851 0.98960 1.00844 0.98675 1.83981 1.57061 1.03309 1.10677 0.92822 0.92229 0.88797 0.87454 0.87605 0.89227 0.89670 0.89909 0.76275 0.93794 0.94526 0.79570 0.94159 0.90520 0.92116 0.90830 0.92714 0.91743 0.92012 0.92838 0.94435 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.05 -0.86 6.51 29.85 0.19 -0.67 16 3 C 0.07 1.70 6.64 88.46 0.59 2.29 16 4 N -0.50 -14.44 10.50 -178.28 -1.87 -16.31 16 5 C 0.14 4.42 6.79 42.10 0.29 4.71 16 6 C -0.08 -2.34 9.70 71.24 0.69 -1.65 16 7 C -0.33 -10.84 6.48 23.88 0.15 -10.69 16 8 C 0.60 21.60 7.74 86.45 0.67 22.27 16 9 O -0.55 -21.87 13.97 -4.31 -0.06 -21.93 16 10 N -0.70 -24.25 4.50 -446.51 -2.01 -26.26 16 11 C 0.15 4.96 2.04 45.00 0.09 5.06 16 12 H 0.07 2.71 5.86 -2.39 -0.01 2.70 16 13 C 0.15 5.56 5.43 86.38 0.47 6.03 16 14 N -0.74 -36.74 5.43 -343.44 -1.87 -38.61 16 15 C -0.24 -13.09 9.99 84.03 0.84 -12.25 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 18 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 19 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 C -0.11 -2.92 4.45 30.60 0.14 -2.78 16 24 C -0.10 -2.29 2.78 -10.79 -0.03 -2.32 16 25 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 26 C -0.15 -3.72 9.00 71.98 0.65 -3.08 16 27 S 0.19 5.15 22.31 -56.49 -1.26 3.89 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.65 6.01 -2.39 -0.01 2.64 16 36 H 0.40 13.41 7.80 -92.71 -0.72 12.69 16 37 H 0.04 1.65 6.66 -2.39 -0.02 1.64 16 38 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.37 20.21 7.33 -92.72 -0.68 19.53 16 40 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.84 6.38 -2.39 -0.02 1.83 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.04 1.12 6.43 -2.39 -0.02 1.11 16 49 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.11 407.55 1.38 -66.74 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: -0.44 Total: 43.31 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 6.58 Total: 0.34 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -5.47 Total: -139.69 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.06 Total: -21.93 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.26 Total: 3.89 kcal Total: -68.11 1.38 -66.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732469409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.106 kcal (2) G-P(sol) polarization free energy of solvation -68.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds