Wall clock time and date at job start Tue Mar 31 2020 22:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48494 * 109.47308 * 269.99701 * 3 2 1 5 5 H 1.48505 * 109.47035 * 30.00030 * 3 2 1 6 6 H 1.48504 * 109.47281 * 149.99834 * 3 2 1 7 7 C 1.38948 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00024 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99649 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00715 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99574 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46824 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99893 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47213 * 180.02562 * 14 13 12 16 16 C 1.30994 * 120.00204 * 124.99711 * 15 14 13 17 17 C 1.50701 * 119.99826 * 179.71900 * 16 15 14 18 18 N 1.46502 * 109.46804 * 125.27541 * 17 16 15 19 19 C 1.34774 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21616 * 120.00055 * 0.02562 * 19 18 17 21 21 C 1.47292 * 120.00662 * 180.02562 * 19 18 17 22 22 F 1.35099 * 119.99737 * 0.02562 * 21 19 18 23 23 C 1.33119 * 120.00505 * 180.02562 * 21 19 18 24 24 C 1.51444 * 126.33908 * 359.68920 * 23 21 19 25 25 C 1.54274 * 106.84976 * 180.24314 * 24 23 21 26 26 C 1.54983 * 103.66263 * 23.48063 * 25 24 23 27 27 C 1.51845 * 126.34147 * 180.02562 * 23 21 19 28 28 H 0.97003 * 119.99669 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99864 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47061 * 60.00342 * 12 10 9 31 31 H 1.09002 * 109.47282 * 299.99936 * 12 10 9 32 32 H 1.00899 * 111.00250 * 303.95213 * 13 12 10 33 33 H 1.08998 * 109.47488 * 59.99327 * 14 13 12 34 34 H 1.09004 * 109.46660 * 299.99740 * 14 13 12 35 35 H 1.08002 * 119.99446 * 304.99240 * 15 14 13 36 36 H 1.08002 * 120.00352 * 0.02562 * 16 15 14 37 37 H 1.08998 * 109.47474 * 245.27493 * 17 16 15 38 38 H 1.09001 * 109.47291 * 5.27780 * 17 16 15 39 39 H 0.96997 * 119.99920 * 0.02562 * 18 17 16 40 40 H 1.09005 * 109.98275 * 299.72529 * 24 23 21 41 41 H 1.08999 * 109.98795 * 61.03016 * 24 23 21 42 42 H 1.09000 * 110.79390 * 264.85790 * 25 24 23 43 43 H 1.08998 * 110.43023 * 141.93431 * 25 24 23 44 44 H 1.08994 * 110.83388 * 204.48969 * 26 25 24 45 45 H 1.09006 * 110.82838 * 80.91296 * 26 25 24 46 46 H 1.09004 * 110.43945 * 274.92303 * 27 23 21 47 47 H 1.09004 * 110.44225 * 37.32107 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0503 -3.7556 0.0004 14 6 7.5188 -3.7948 0.0010 15 6 7.9831 -5.2285 -0.0002 16 6 8.8042 -5.6503 -0.9296 17 6 9.2734 -7.0824 -0.9272 18 7 8.9809 -7.6943 -2.2258 19 6 9.3136 -8.9800 -2.4552 20 8 9.8563 -9.6324 -1.5841 21 6 9.0201 -9.5951 -3.7610 22 9 8.4177 -8.8702 -4.7289 23 6 9.3483 -10.8651 -3.9874 24 6 10.0299 -11.8032 -3.0133 25 6 10.1998 -13.1544 -3.7382 26 6 10.1724 -12.7704 -5.2395 27 6 9.1150 -11.6394 -5.2726 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3633 0.0007 30 1 5.9240 -1.8568 0.8910 31 1 5.9241 -1.8567 -0.8889 32 1 5.6749 -4.2722 0.7816 33 1 7.8955 -3.2913 0.8914 34 1 7.8961 -3.2903 -0.8886 35 1 7.6387 -5.9082 0.7652 36 1 9.1490 -4.9705 -1.6948 37 1 10.3476 -7.1126 -0.7451 38 1 8.7561 -7.6329 -0.1414 39 1 8.5477 -7.1740 -2.9204 40 1 11.0044 -11.4041 -2.7317 41 1 9.4101 -11.9341 -2.1263 42 1 9.3763 -13.8276 -3.5000 43 1 11.1553 -13.6090 -3.4766 44 1 9.8553 -13.6158 -5.8501 45 1 11.1454 -12.4006 -5.5628 46 1 8.1092 -12.0592 -5.2868 47 1 9.2702 -10.9957 -6.1384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732839004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:24 Heat of formation + Delta-G solvation = -91.347200 kcal Electronic energy + Delta-G solvation = -27265.136143 eV Core-core repulsion = 22976.638035 eV Total energy + Delta-G solvation = -4288.498108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.17702 -40.13320 -38.54702 -38.34030 -36.83533 -35.36326 -33.97666 -32.95628 -31.75349 -31.65533 -29.30251 -28.84774 -26.75814 -25.41608 -24.03858 -22.66857 -21.58571 -21.21808 -20.37718 -19.43864 -19.20448 -18.34379 -18.07711 -16.90283 -16.60798 -16.31575 -15.92072 -15.75403 -15.66935 -15.20185 -15.01895 -14.85365 -14.40182 -14.05612 -13.93424 -13.79742 -13.76312 -13.55094 -13.13519 -12.93150 -12.67381 -12.65166 -12.46036 -12.16105 -11.97104 -11.83257 -11.75389 -11.61657 -11.59051 -11.27736 -11.17422 -11.09433 -10.60854 -10.36299 -9.98796 -9.73523 -9.58716 -9.43451 -9.12999 -8.61764 -8.20988 -8.15814 -6.32147 -3.83745 0.74209 1.74007 2.69261 2.82566 3.01110 3.05878 3.14029 3.72287 3.74781 3.95830 4.08402 4.13658 4.15869 4.51688 4.53086 4.61860 4.76806 4.79493 4.87546 4.94160 5.07569 5.15436 5.20618 5.25419 5.27972 5.30628 5.37487 5.40183 5.48749 5.53676 5.58605 5.60706 5.61295 5.70705 5.76904 5.83330 5.90864 5.95612 6.01209 6.35113 6.50227 7.01813 7.09595 7.50758 7.57030 7.70752 8.13263 8.58502 8.93783 9.41111 9.81165 10.80960 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.001453 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.098954 B =19264.753228 C =20000.465515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.047 3.953 13 N -0.665 5.665 14 C 0.082 3.918 15 C -0.109 4.109 16 C -0.184 4.184 17 C 0.154 3.846 18 N -0.716 5.716 19 C 0.550 3.450 20 O -0.524 6.524 21 C -0.013 4.013 22 F -0.135 7.135 23 C -0.072 4.072 24 C -0.080 4.080 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.097 4.097 28 H 0.273 0.727 29 H 0.371 0.629 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.352 0.648 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.409 0.591 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.944 -18.858 -7.482 32.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.298 5.298 14 C -0.047 4.047 15 C -0.128 4.128 16 C -0.204 4.204 17 C 0.032 3.968 18 N -0.367 5.367 19 C 0.336 3.664 20 O -0.402 6.402 21 C -0.035 4.035 22 F -0.114 7.114 23 C -0.075 4.075 24 C -0.117 4.117 25 C -0.166 4.166 26 C -0.160 4.160 27 C -0.134 4.134 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.244 0.756 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.110 0.890 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 25.625 -19.923 -7.538 33.323 hybrid contribution 0.326 2.303 0.358 2.353 sum 25.951 -17.620 -7.180 32.179 Atomic orbital electron populations 1.69626 1.05649 1.27503 1.49306 1.25039 0.95492 0.97974 0.97619 0.86663 0.79726 0.84022 0.78904 1.19589 1.20174 1.19551 1.19440 0.79240 0.96664 1.48130 0.86278 1.42201 1.07542 1.06141 1.67081 1.19690 0.88161 0.84586 0.84071 1.90569 1.69416 1.30936 1.53672 1.21727 0.95151 0.90286 1.01362 1.60117 1.05284 1.12775 1.51595 1.21092 0.88950 0.93618 1.01024 1.22875 0.94662 0.97131 0.98177 1.22723 1.01246 0.95848 1.00542 1.20359 1.00975 0.90710 0.84797 1.45891 1.61604 1.11973 1.17254 1.18149 0.79360 0.82152 0.86724 1.90826 1.42722 1.62003 1.44674 1.18801 1.06627 0.90730 0.87380 1.91493 1.81437 1.77319 1.61154 1.23071 0.93657 0.92184 0.98570 1.21174 1.01298 0.92347 0.96852 1.22487 1.02432 0.96869 0.94858 1.22526 0.98855 0.97709 0.96951 1.21528 1.00686 0.96836 0.94385 0.91602 0.79677 0.93655 0.89405 0.82846 0.94206 0.90438 0.86818 0.86447 0.90525 0.90725 0.75605 0.89130 0.89160 0.91030 0.90851 0.90642 0.90955 0.88975 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 7 C -0.31 -8.67 10.16 -14.93 -0.15 -8.83 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.02 5.09 -10.96 -0.06 -14.07 16 10 C 0.45 10.17 7.82 -10.98 -0.09 10.08 16 11 O -0.56 -15.21 15.78 5.55 0.09 -15.12 16 12 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 13 N -0.67 -10.03 6.12 -116.33 -0.71 -10.74 16 14 C 0.08 0.89 6.12 -4.97 -0.03 0.86 16 15 C -0.11 -1.05 9.38 -36.02 -0.34 -1.39 16 16 C -0.18 -1.57 9.24 -36.02 -0.33 -1.90 16 17 C 0.15 1.36 6.11 -5.19 -0.03 1.33 16 18 N -0.72 -6.72 5.54 -62.61 -0.35 -7.07 16 19 C 0.55 5.92 7.77 -12.58 -0.10 5.83 16 20 O -0.52 -6.64 14.12 5.26 0.07 -6.57 16 21 C -0.01 -0.13 7.42 -37.68 -0.28 -0.41 16 22 F -0.14 -1.35 16.52 2.25 0.04 -1.31 16 23 C -0.07 -0.60 6.16 -100.20 -0.62 -1.22 16 24 C -0.08 -0.61 4.81 -26.85 -0.13 -0.74 16 25 C -0.13 -0.68 6.88 -25.02 -0.17 -0.86 16 26 C -0.12 -0.59 6.94 -24.70 -0.17 -0.76 16 27 C -0.10 -0.60 6.44 -26.34 -0.17 -0.77 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.35 5.49 8.42 -39.29 -0.33 5.16 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 35 H 0.11 1.06 7.84 -52.49 -0.41 0.65 16 36 H 0.12 0.90 7.84 -52.49 -0.41 0.49 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 39 H 0.41 3.42 8.01 -40.82 -0.33 3.09 16 40 H 0.09 0.75 7.67 -51.93 -0.40 0.36 16 41 H 0.09 0.78 7.68 -51.93 -0.40 0.38 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -33.90 398.46 -8.69 -42.60 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -7.11 Total: 13.69 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.73 Total: 2.99 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.34 Total: -56.83 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.16 Total: -21.69 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.90 -8.69 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732839004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.752 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds