Wall clock time and date at job start Tue Mar 31 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48494 * 109.47308 * 269.99701 * 3 2 1 5 5 H 1.48505 * 109.47035 * 30.00030 * 3 2 1 6 6 H 1.48504 * 109.47281 * 149.99834 * 3 2 1 7 7 C 1.38948 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00024 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99649 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00715 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99574 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46824 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99893 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47213 * 180.02562 * 14 13 12 16 16 C 1.30994 * 120.00204 * 124.99711 * 15 14 13 17 17 C 1.50701 * 119.99826 * 179.71900 * 16 15 14 18 18 N 1.46502 * 109.46804 * 125.27541 * 17 16 15 19 19 C 1.34774 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21616 * 120.00055 * 0.02562 * 19 18 17 21 21 C 1.47292 * 120.00662 * 180.02562 * 19 18 17 22 22 F 1.35099 * 119.99737 * 0.02562 * 21 19 18 23 23 C 1.33119 * 120.00505 * 180.02562 * 21 19 18 24 24 C 1.51444 * 126.33908 * 359.68920 * 23 21 19 25 25 C 1.54274 * 106.84976 * 180.24314 * 24 23 21 26 26 C 1.54983 * 103.66263 * 23.48063 * 25 24 23 27 27 C 1.51845 * 126.34147 * 180.02562 * 23 21 19 28 28 H 0.97003 * 119.99669 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99864 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47061 * 60.00342 * 12 10 9 31 31 H 1.09002 * 109.47282 * 299.99936 * 12 10 9 32 32 H 1.00899 * 111.00250 * 303.95213 * 13 12 10 33 33 H 1.08998 * 109.47488 * 59.99327 * 14 13 12 34 34 H 1.09004 * 109.46660 * 299.99740 * 14 13 12 35 35 H 1.08002 * 119.99446 * 304.99240 * 15 14 13 36 36 H 1.08002 * 120.00352 * 0.02562 * 16 15 14 37 37 H 1.08998 * 109.47474 * 245.27493 * 17 16 15 38 38 H 1.09001 * 109.47291 * 5.27780 * 17 16 15 39 39 H 0.96997 * 119.99920 * 0.02562 * 18 17 16 40 40 H 1.09005 * 109.98275 * 299.72529 * 24 23 21 41 41 H 1.08999 * 109.98795 * 61.03016 * 24 23 21 42 42 H 1.09000 * 110.79390 * 264.85790 * 25 24 23 43 43 H 1.08998 * 110.43023 * 141.93431 * 25 24 23 44 44 H 1.08994 * 110.83388 * 204.48969 * 26 25 24 45 45 H 1.09006 * 110.82838 * 80.91296 * 26 25 24 46 46 H 1.09004 * 110.43945 * 274.92303 * 27 23 21 47 47 H 1.09004 * 110.44225 * 37.32107 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0503 -3.7556 0.0004 14 6 7.5188 -3.7948 0.0010 15 6 7.9831 -5.2285 -0.0002 16 6 8.8042 -5.6503 -0.9296 17 6 9.2734 -7.0824 -0.9272 18 7 8.9809 -7.6943 -2.2258 19 6 9.3136 -8.9800 -2.4552 20 8 9.8563 -9.6324 -1.5841 21 6 9.0201 -9.5951 -3.7610 22 9 8.4177 -8.8702 -4.7289 23 6 9.3483 -10.8651 -3.9874 24 6 10.0299 -11.8032 -3.0133 25 6 10.1998 -13.1544 -3.7382 26 6 10.1724 -12.7704 -5.2395 27 6 9.1150 -11.6394 -5.2726 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3633 0.0007 30 1 5.9240 -1.8568 0.8910 31 1 5.9241 -1.8567 -0.8889 32 1 5.6749 -4.2722 0.7816 33 1 7.8955 -3.2913 0.8914 34 1 7.8961 -3.2903 -0.8886 35 1 7.6387 -5.9082 0.7652 36 1 9.1490 -4.9705 -1.6948 37 1 10.3476 -7.1126 -0.7451 38 1 8.7561 -7.6329 -0.1414 39 1 8.5477 -7.1740 -2.9204 40 1 11.0044 -11.4041 -2.7317 41 1 9.4101 -11.9341 -2.1263 42 1 9.3763 -13.8276 -3.5000 43 1 11.1553 -13.6090 -3.4766 44 1 9.8553 -13.6158 -5.8501 45 1 11.1454 -12.4006 -5.5628 46 1 8.1092 -12.0592 -5.2868 47 1 9.2702 -10.9957 -6.1384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732839004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:23 Heat of formation + Delta-G solvation = -116.773153 kcal Electronic energy + Delta-G solvation = -27266.238695 eV Core-core repulsion = 22976.638035 eV Total energy + Delta-G solvation = -4289.600660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.91960 -40.93514 -40.31228 -38.92318 -37.78188 -36.40890 -35.87475 -33.95009 -33.69678 -32.37879 -29.92021 -29.80085 -27.96505 -26.46295 -25.39020 -23.67146 -22.30343 -21.73936 -21.40261 -21.01273 -20.27610 -19.90180 -18.83804 -17.89088 -17.53795 -17.31429 -17.08317 -16.70261 -16.63371 -16.37773 -15.97118 -15.84250 -15.67060 -15.31337 -15.07046 -14.86852 -14.56721 -14.48675 -14.27783 -14.18495 -14.05565 -13.52671 -13.31785 -13.23996 -13.09547 -12.94050 -12.73188 -12.56998 -12.41364 -12.11442 -12.03848 -12.01858 -11.96815 -11.51822 -11.51449 -11.16393 -10.53231 -10.45562 -10.25584 -10.19864 -9.84713 -9.27774 -8.41609 -6.02978 0.01590 0.99686 1.30469 1.36364 1.45224 1.88535 1.95222 2.09049 2.23327 2.78716 3.08158 3.14753 3.30296 3.48942 3.66520 3.73441 3.98179 4.06854 4.11441 4.15910 4.26132 4.38379 4.41910 4.45409 4.48262 4.54895 4.60403 4.63439 4.66332 4.78245 4.84180 4.89566 4.99381 5.02090 5.10928 5.16766 5.23629 5.36083 5.41026 5.51871 5.64211 5.75248 5.90185 6.03932 6.32649 6.35141 6.59395 6.87559 6.91650 7.39228 7.96116 8.76108 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.001453 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.098954 B =19264.753228 C =20000.465515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.332 4.332 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.616 6.616 12 C 0.062 3.938 13 N -0.687 5.687 14 C 0.087 3.913 15 C -0.124 4.124 16 C -0.167 4.167 17 C 0.154 3.846 18 N -0.712 5.712 19 C 0.546 3.454 20 O -0.550 6.550 21 C -0.036 4.036 22 F -0.139 7.139 23 C -0.064 4.064 24 C -0.082 4.082 25 C -0.125 4.125 26 C -0.118 4.118 27 C -0.100 4.100 28 H 0.279 0.721 29 H 0.391 0.609 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.344 0.656 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.414 0.586 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.216 -17.547 -8.274 35.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.153 1.153 7 C -0.461 4.461 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.070 4.070 13 N -0.320 5.320 14 C -0.041 4.041 15 C -0.143 4.143 16 C -0.187 4.187 17 C 0.032 3.968 18 N -0.363 5.363 19 C 0.333 3.667 20 O -0.430 6.430 21 C -0.058 4.058 22 F -0.118 7.118 23 C -0.067 4.067 24 C -0.118 4.118 25 C -0.162 4.162 26 C -0.155 4.155 27 C -0.137 4.137 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.098 0.902 31 H 0.135 0.865 32 H 0.163 0.837 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.250 0.750 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.119 0.881 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 28.932 -18.604 -8.340 35.394 hybrid contribution -0.722 1.712 0.595 1.951 sum 28.211 -16.891 -7.745 33.781 Atomic orbital electron populations 1.69813 1.08215 1.29284 1.50207 1.26140 0.96471 1.02784 0.95943 0.85341 0.79501 0.76542 0.79965 1.18137 1.20048 1.15284 1.19017 0.81601 0.94928 1.50548 0.92839 1.42020 1.05766 1.07639 1.67740 1.21046 0.91135 0.83274 0.81105 1.90547 1.71481 1.32891 1.55181 1.21652 0.89349 0.91767 1.04244 1.60124 1.08052 1.12108 1.51695 1.21139 0.86119 0.94400 1.02442 1.22847 0.95594 0.96974 0.98902 1.22755 1.00269 0.95512 1.00127 1.20368 1.01238 0.90904 0.84318 1.45896 1.61145 1.11704 1.17538 1.18355 0.79030 0.82377 0.86926 1.90806 1.44088 1.62622 1.45523 1.18757 1.08449 0.91381 0.87227 1.91476 1.81698 1.77489 1.61117 1.23457 0.91744 0.91814 0.99675 1.21201 1.00385 0.93654 0.96602 1.22491 1.03339 0.95449 0.94914 1.22542 0.98548 0.97678 0.96719 1.21657 1.01687 0.97132 0.93174 0.91130 0.77368 0.90246 0.86543 0.83728 0.92452 0.89110 0.87123 0.84945 0.89956 0.91662 0.75002 0.90008 0.90504 0.90347 0.89766 0.88842 0.90636 0.88113 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.96 21.66 0.30 -56.16 16 2 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 3 Si 0.97 38.40 27.74 68.60 1.90 40.31 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 7 C -0.33 -19.52 10.16 84.04 0.85 -18.66 16 8 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 9 N -0.59 -27.66 5.09 -306.99 -1.56 -29.22 16 10 C 0.45 20.05 7.82 87.66 0.69 20.73 16 11 O -0.62 -34.46 15.78 -3.05 -0.05 -34.50 16 12 C 0.06 1.82 6.17 85.56 0.53 2.34 16 13 N -0.69 -19.42 6.12 -521.97 -3.19 -22.61 16 14 C 0.09 1.62 6.12 85.56 0.52 2.14 16 15 C -0.12 -2.18 9.38 25.65 0.24 -1.94 16 16 C -0.17 -2.55 9.24 25.65 0.24 -2.31 16 17 C 0.15 2.62 6.11 85.63 0.52 3.14 16 18 N -0.71 -13.17 5.54 -470.24 -2.61 -15.78 16 19 C 0.55 11.95 7.77 86.62 0.67 12.63 16 20 O -0.55 -14.33 14.12 -4.08 -0.06 -14.39 16 21 C -0.04 -0.71 7.42 23.50 0.17 -0.53 16 22 F -0.14 -2.76 16.52 44.97 0.74 -2.02 16 23 C -0.06 -1.05 6.16 -17.00 -0.10 -1.15 16 24 C -0.08 -1.23 4.81 30.52 0.15 -1.09 16 25 C -0.12 -1.13 6.88 31.70 0.22 -0.92 16 26 C -0.12 -0.89 6.94 31.91 0.22 -0.67 16 27 C -0.10 -1.10 6.44 30.85 0.20 -0.90 16 28 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.39 14.95 5.76 -92.71 -0.53 14.42 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.34 10.54 8.42 -89.69 -0.76 9.78 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.47 7.79 -2.38 -0.02 1.45 16 35 H 0.11 2.00 7.84 -2.91 -0.02 1.97 16 36 H 0.13 1.65 7.84 -2.91 -0.02 1.62 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.24 7.79 -2.39 -0.02 1.23 16 39 H 0.41 6.69 8.01 -92.71 -0.74 5.94 16 40 H 0.08 1.39 7.67 -2.38 -0.02 1.37 16 41 H 0.08 1.38 7.68 -2.39 -0.02 1.36 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 44 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -79.71 398.46 -0.01 -79.72 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -1.08 Total: 42.20 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.59 Total: 12.46 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -7.06 Total: -123.78 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.11 Total: -48.89 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.74 Total: -2.02 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.90 Total: 40.31 kcal Total: -79.71 -0.01 -79.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732839004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.054 kcal (2) G-P(sol) polarization free energy of solvation -79.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds