Wall clock time and date at job start Tue Mar 31 2020 23:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00289 * 2 1 4 4 H 1.08000 * 120.00010 * 320.05898 * 3 2 1 5 5 C 1.38816 * 119.99971 * 140.05634 * 3 2 1 6 6 N 1.31611 * 119.99836 * 160.76206 * 5 3 2 7 7 Si 1.86803 * 120.00050 * 340.76078 * 5 3 2 8 8 H 1.48499 * 109.46888 * 92.47460 * 7 5 3 9 9 H 1.48499 * 109.47163 * 212.47294 * 7 5 3 10 10 H 1.48501 * 109.47079 * 332.47933 * 7 5 3 11 11 C 1.46501 * 119.99688 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46899 * 90.00176 * 11 2 1 13 13 C 1.52996 * 109.47493 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47463 * 180.02562 * 13 12 11 15 15 C 1.46500 * 120.00088 * 270.00015 * 14 13 12 16 16 C 1.34781 * 119.99920 * 90.00081 * 14 13 12 17 17 O 1.21633 * 119.99891 * 3.13868 * 16 14 13 18 18 C 1.47263 * 120.00014 * 183.13791 * 16 14 13 19 19 C 1.35207 * 123.14200 * 172.50142 * 18 16 14 20 20 S 1.70943 * 108.82694 * 180.27055 * 19 18 16 21 21 C 1.70772 * 91.12934 * 359.97438 * 20 19 18 22 22 C 1.50695 * 124.71898 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47507 * 240.04215 * 22 21 20 24 24 C 1.52999 * 109.47332 * 0.04805 * 22 21 20 25 25 C 1.53001 * 109.46873 * 120.04355 * 22 21 20 26 26 N 1.28648 * 110.55807 * 0.02562 * 21 20 19 27 27 H 1.09001 * 109.47401 * 265.09373 * 1 2 3 28 28 H 1.09003 * 109.47107 * 25.08840 * 1 2 3 29 29 H 1.08994 * 109.47388 * 145.09040 * 1 2 3 30 30 H 0.97002 * 120.00539 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.47498 * 330.00477 * 11 2 1 32 32 H 1.09000 * 109.47130 * 209.99644 * 11 2 1 33 33 H 1.09006 * 109.46964 * 60.00278 * 12 11 2 34 34 H 1.08994 * 109.47193 * 300.00475 * 12 11 2 35 35 H 1.09001 * 109.46766 * 59.99876 * 13 12 11 36 36 H 1.09004 * 109.47387 * 300.00438 * 13 12 11 37 37 H 1.08999 * 109.46972 * 264.26627 * 15 14 13 38 38 H 1.08998 * 109.46780 * 24.26733 * 15 14 13 39 39 H 1.09004 * 109.46901 * 144.26451 * 15 14 13 40 40 H 1.07998 * 125.58562 * 0.26528 * 19 18 16 41 41 H 1.09009 * 109.47018 * 60.00571 * 23 22 21 42 42 H 1.08998 * 109.47400 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47241 * 300.00546 * 23 22 21 44 44 H 1.08998 * 109.47354 * 59.99437 * 24 22 21 45 45 H 1.08998 * 109.47464 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.47237 * 300.00000 * 24 22 21 47 47 H 1.09001 * 109.47371 * 59.99966 * 25 22 21 48 48 H 1.09001 * 109.47308 * 180.02562 * 25 22 21 49 49 H 1.09004 * 109.47437 * 299.99987 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7987 2.0121 -0.6005 5 6 3.2950 1.3261 0.7718 6 7 4.1554 2.2853 0.5043 7 14 3.6148 0.1532 2.1902 8 1 4.4388 -0.9866 1.7137 9 1 4.3384 0.8694 3.2712 10 1 2.3213 -0.3556 2.7130 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7110 -1.4418 13 6 3.2179 -3.0357 -1.4413 14 7 3.4625 -3.4589 -2.8224 15 6 2.4864 -4.3052 -3.5130 16 6 4.5858 -3.0696 -3.4575 17 8 5.4230 -2.4148 -2.8661 18 6 4.7994 -3.4370 -4.8675 19 6 5.8254 -2.9609 -5.6081 20 16 5.7183 -3.6148 -7.1839 21 6 4.3112 -4.4862 -6.7632 22 6 3.5462 -5.3852 -7.6999 23 6 2.1129 -4.8699 -7.8443 24 6 4.2265 -5.3912 -9.0703 25 6 3.5225 -6.8073 -7.1361 26 7 3.9946 -4.2675 -5.5356 27 1 -0.3634 -0.0879 1.0239 28 1 -0.3633 0.9307 -0.4358 29 1 -0.3634 -0.8427 -0.5881 30 1 4.9556 2.3836 1.0438 31 1 1.6083 -2.0282 0.5146 32 1 3.1499 -1.1383 0.5143 33 1 3.0416 -0.9516 -1.9559 34 1 1.5000 -1.8414 -1.9556 35 1 2.6291 -3.7953 -0.9271 36 1 4.1703 -2.9049 -0.9276 37 1 2.7858 -5.3497 -3.4270 38 1 1.5040 -4.1704 -3.0604 39 1 2.4430 -4.0252 -4.5656 40 1 6.5877 -2.2791 -5.2611 41 1 2.1297 -3.8567 -8.2461 42 1 1.5597 -5.5199 -8.5222 43 1 1.6282 -4.8657 -6.8680 44 1 5.2477 -5.7583 -8.9674 45 1 3.6735 -6.0418 -9.7477 46 1 4.2435 -4.3780 -9.4720 47 1 3.0379 -6.8031 -6.1598 48 1 2.9696 -7.4577 -7.8138 49 1 4.5437 -7.1745 -7.0332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733777551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:40 Heat of formation + Delta-G solvation = 35.720485 kcal Electronic energy + Delta-G solvation = -27826.272563 eV Core-core repulsion = 24109.497700 eV Total energy + Delta-G solvation = -3716.774864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80731 -39.00504 -36.96415 -36.34517 -35.28982 -31.94262 -31.04654 -30.22885 -27.89542 -27.65844 -27.11427 -26.49362 -26.02154 -24.89890 -22.89134 -21.39334 -20.54363 -19.71544 -19.23256 -18.18045 -16.70087 -16.38675 -16.13477 -15.75489 -15.36460 -15.30295 -14.83983 -14.53844 -14.27221 -13.90809 -13.72026 -13.43053 -13.34632 -13.14072 -12.86298 -12.73077 -12.61740 -12.55182 -12.41774 -12.10252 -12.04117 -11.92673 -11.83455 -11.68494 -11.46330 -11.33441 -11.25631 -11.00715 -10.72732 -10.36798 -10.35905 -9.95738 -9.82057 -9.67204 -9.54937 -9.42501 -9.09269 -8.44058 -8.38365 -6.69072 -5.89636 -3.35340 0.36695 1.02022 1.43055 1.89613 3.16558 3.39709 3.41315 3.52103 3.58079 3.61035 4.27690 4.44867 4.48989 4.61010 4.78866 4.98512 5.10386 5.10486 5.15195 5.18986 5.33184 5.35681 5.40800 5.43020 5.46297 5.47683 5.50464 5.57841 5.65451 5.70912 5.87538 5.89486 5.91900 5.98473 6.09433 6.17575 6.26401 6.34160 6.43420 6.62446 6.75716 6.79903 6.89705 7.14753 7.23293 7.55008 8.16725 8.31008 8.47575 9.07589 9.79790 10.21436 11.26027 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.002719 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.203253 B =10293.697068 C =10883.598127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.613 5.613 3 C -0.271 4.271 4 H 0.076 0.924 5 C 0.036 3.964 6 N -0.902 5.902 7 Si 0.883 3.117 8 H -0.282 1.282 9 H -0.302 1.302 10 H -0.271 1.271 11 C 0.140 3.860 12 C -0.145 4.145 13 C 0.113 3.887 14 N -0.597 5.597 15 C 0.077 3.923 16 C 0.585 3.415 17 O -0.525 6.525 18 C 0.018 3.982 19 C -0.229 4.229 20 S 0.206 5.794 21 C 0.029 3.971 22 C 0.013 3.987 23 C -0.136 4.136 24 C -0.156 4.156 25 C -0.134 4.134 26 N -0.432 5.432 27 H 0.006 0.994 28 H 0.044 0.956 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.189 0.811 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 -21.224 -21.342 30.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.337 5.337 3 C -0.400 4.400 4 H 0.093 0.907 5 C -0.164 4.164 6 N -0.543 5.543 7 Si 0.714 3.286 8 H -0.210 1.210 9 H -0.230 1.230 10 H -0.195 1.195 11 C 0.013 3.987 12 C -0.186 4.186 13 C -0.009 4.009 14 N -0.328 5.328 15 C -0.066 4.066 16 C 0.369 3.631 17 O -0.401 6.401 18 C -0.116 4.116 19 C -0.371 4.371 20 S 0.464 5.536 21 C -0.251 4.251 22 C 0.009 3.991 23 C -0.195 4.195 24 C -0.214 4.214 25 C -0.193 4.193 26 N -0.148 5.148 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.206 0.794 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.391 -20.900 -21.598 30.057 hybrid contribution 0.165 -0.251 1.823 1.847 sum -0.226 -21.152 -19.775 28.957 Atomic orbital electron populations 1.21055 0.84685 0.98912 0.97223 1.44024 1.00747 1.02014 1.86951 1.18765 1.07760 0.91080 1.22352 0.90651 1.25516 0.97020 0.96313 0.97575 1.69835 1.10601 1.34253 1.39626 0.86847 0.77888 0.80421 0.83439 1.20991 1.23013 1.19550 1.21104 0.96396 0.87773 0.93398 1.22466 0.99375 0.95644 1.01101 1.21668 1.01611 0.96931 0.80721 1.47698 1.20304 1.50255 1.14570 1.22230 0.90970 0.93678 0.99715 1.17151 0.82152 0.79822 0.83933 1.90876 1.43952 1.39182 1.66102 1.20482 0.94271 0.99845 0.97034 1.26668 1.04665 1.07183 0.98567 1.82774 1.24108 1.37366 1.09312 1.27371 0.99165 1.03008 0.95517 1.19215 0.94779 0.93412 0.91676 1.21865 0.93402 1.01203 1.03023 1.22042 1.00987 1.03072 0.95256 1.21849 1.02380 0.93229 1.01861 1.67184 1.26988 1.15149 1.05466 0.97637 0.93721 0.95693 0.92718 0.94447 0.92728 0.90929 0.92873 0.90858 0.89903 0.93136 0.92075 0.88007 0.79386 0.92350 0.91519 0.91316 0.91782 0.90551 0.91707 0.91330 0.91579 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.67 10.70 59.85 0.64 3.31 16 2 N -0.61 -15.57 2.45 -181.12 -0.44 -16.01 16 3 C -0.27 -8.04 9.90 -15.06 -0.15 -8.19 16 4 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 5 C 0.04 1.11 5.34 -17.43 -0.09 1.02 16 6 N -0.90 -29.02 13.97 55.49 0.78 -28.24 16 7 Si 0.88 23.57 25.05 -169.99 -4.26 19.31 16 8 H -0.28 -7.34 6.59 56.52 0.37 -6.96 16 9 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 10 H -0.27 -7.03 7.11 56.52 0.40 -6.62 16 11 C 0.14 3.19 4.49 -4.04 -0.02 3.17 16 12 C -0.14 -2.97 5.86 -26.73 -0.16 -3.12 16 13 C 0.11 1.99 5.41 -4.04 -0.02 1.97 16 14 N -0.60 -9.76 2.87 -182.91 -0.53 -10.29 16 15 C 0.08 0.96 9.48 59.85 0.57 1.53 16 16 C 0.58 10.57 7.65 -12.59 -0.10 10.47 16 17 O -0.53 -11.53 16.29 5.25 0.09 -11.45 16 18 C 0.02 0.26 6.49 -84.53 -0.55 -0.29 16 19 C -0.23 -2.87 10.62 29.65 0.31 -2.56 16 20 S 0.21 1.77 21.28 -107.50 -2.29 -0.52 16 21 C 0.03 0.27 5.74 -13.61 -0.08 0.19 16 22 C 0.01 0.08 0.99 -155.67 -0.15 -0.07 16 23 C -0.14 -0.86 8.45 37.15 0.31 -0.55 16 24 C -0.16 -0.72 7.53 37.16 0.28 -0.44 16 25 C -0.13 -0.81 8.45 37.16 0.31 -0.50 16 26 N -0.43 -5.18 6.73 -8.51 -0.06 -5.24 16 27 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.04 0.92 8.00 -51.93 -0.42 0.51 16 29 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 30 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 31 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.05 1.38 3.26 -51.93 -0.17 1.21 16 33 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 36 H 0.08 1.63 7.38 -51.93 -0.38 1.25 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 39 H 0.10 1.27 5.24 -51.93 -0.27 1.00 16 40 H 0.19 2.33 8.04 -52.49 -0.42 1.91 16 41 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.28 7.91 -51.93 -0.41 -0.13 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.06 0.30 7.91 -51.93 -0.41 -0.12 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 402.49 15.07 6.07 6.07 Total: -1.00 -35.79 402.49 -7.93 -43.72 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.40 Total: -3.30 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 1.11 Total: 5.95 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.25 Total: -59.78 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.26 Total: 19.31 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.29 Total: -0.52 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.79 -7.93 -43.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733777551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.442 kcal (2) G-P(sol) polarization free energy of solvation -35.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds