Wall clock time and date at job start Tue Mar 31 2020 23:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00289 * 2 1 4 4 H 1.08000 * 120.00010 * 320.05898 * 3 2 1 5 5 C 1.38816 * 119.99971 * 140.05634 * 3 2 1 6 6 N 1.31611 * 119.99836 * 160.76206 * 5 3 2 7 7 Si 1.86803 * 120.00050 * 340.76078 * 5 3 2 8 8 H 1.48499 * 109.46888 * 92.47460 * 7 5 3 9 9 H 1.48499 * 109.47163 * 212.47294 * 7 5 3 10 10 H 1.48501 * 109.47079 * 332.47933 * 7 5 3 11 11 C 1.46501 * 119.99688 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46899 * 90.00176 * 11 2 1 13 13 C 1.52996 * 109.47493 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47463 * 180.02562 * 13 12 11 15 15 C 1.46500 * 120.00088 * 270.00015 * 14 13 12 16 16 C 1.34781 * 119.99920 * 90.00081 * 14 13 12 17 17 O 1.21633 * 119.99891 * 3.13868 * 16 14 13 18 18 C 1.47263 * 120.00014 * 183.13791 * 16 14 13 19 19 C 1.35207 * 123.14200 * 172.50142 * 18 16 14 20 20 S 1.70943 * 108.82694 * 180.27055 * 19 18 16 21 21 C 1.70772 * 91.12934 * 359.97438 * 20 19 18 22 22 C 1.50695 * 124.71898 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47507 * 240.04215 * 22 21 20 24 24 C 1.52999 * 109.47332 * 0.04805 * 22 21 20 25 25 C 1.53001 * 109.46873 * 120.04355 * 22 21 20 26 26 N 1.28648 * 110.55807 * 0.02562 * 21 20 19 27 27 H 1.09001 * 109.47401 * 265.09373 * 1 2 3 28 28 H 1.09003 * 109.47107 * 25.08840 * 1 2 3 29 29 H 1.08994 * 109.47388 * 145.09040 * 1 2 3 30 30 H 0.97002 * 120.00539 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.47498 * 330.00477 * 11 2 1 32 32 H 1.09000 * 109.47130 * 209.99644 * 11 2 1 33 33 H 1.09006 * 109.46964 * 60.00278 * 12 11 2 34 34 H 1.08994 * 109.47193 * 300.00475 * 12 11 2 35 35 H 1.09001 * 109.46766 * 59.99876 * 13 12 11 36 36 H 1.09004 * 109.47387 * 300.00438 * 13 12 11 37 37 H 1.08999 * 109.46972 * 264.26627 * 15 14 13 38 38 H 1.08998 * 109.46780 * 24.26733 * 15 14 13 39 39 H 1.09004 * 109.46901 * 144.26451 * 15 14 13 40 40 H 1.07998 * 125.58562 * 0.26528 * 19 18 16 41 41 H 1.09009 * 109.47018 * 60.00571 * 23 22 21 42 42 H 1.08998 * 109.47400 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47241 * 300.00546 * 23 22 21 44 44 H 1.08998 * 109.47354 * 59.99437 * 24 22 21 45 45 H 1.08998 * 109.47464 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.47237 * 300.00000 * 24 22 21 47 47 H 1.09001 * 109.47371 * 59.99966 * 25 22 21 48 48 H 1.09001 * 109.47308 * 180.02562 * 25 22 21 49 49 H 1.09004 * 109.47437 * 299.99987 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7987 2.0121 -0.6005 5 6 3.2950 1.3261 0.7718 6 7 4.1554 2.2853 0.5043 7 14 3.6148 0.1532 2.1902 8 1 4.4388 -0.9866 1.7137 9 1 4.3384 0.8694 3.2712 10 1 2.3213 -0.3556 2.7130 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7110 -1.4418 13 6 3.2179 -3.0357 -1.4413 14 7 3.4625 -3.4589 -2.8224 15 6 2.4864 -4.3052 -3.5130 16 6 4.5858 -3.0696 -3.4575 17 8 5.4230 -2.4148 -2.8661 18 6 4.7994 -3.4370 -4.8675 19 6 5.8254 -2.9609 -5.6081 20 16 5.7183 -3.6148 -7.1839 21 6 4.3112 -4.4862 -6.7632 22 6 3.5462 -5.3852 -7.6999 23 6 2.1129 -4.8699 -7.8443 24 6 4.2265 -5.3912 -9.0703 25 6 3.5225 -6.8073 -7.1361 26 7 3.9946 -4.2675 -5.5356 27 1 -0.3634 -0.0879 1.0239 28 1 -0.3633 0.9307 -0.4358 29 1 -0.3634 -0.8427 -0.5881 30 1 4.9556 2.3836 1.0438 31 1 1.6083 -2.0282 0.5146 32 1 3.1499 -1.1383 0.5143 33 1 3.0416 -0.9516 -1.9559 34 1 1.5000 -1.8414 -1.9556 35 1 2.6291 -3.7953 -0.9271 36 1 4.1703 -2.9049 -0.9276 37 1 2.7858 -5.3497 -3.4270 38 1 1.5040 -4.1704 -3.0604 39 1 2.4430 -4.0252 -4.5656 40 1 6.5877 -2.2791 -5.2611 41 1 2.1297 -3.8567 -8.2461 42 1 1.5597 -5.5199 -8.5222 43 1 1.6282 -4.8657 -6.8680 44 1 5.2477 -5.7583 -8.9674 45 1 3.6735 -6.0418 -9.7477 46 1 4.2435 -4.3780 -9.4720 47 1 3.0379 -6.8031 -6.1598 48 1 2.9696 -7.4577 -7.8138 49 1 4.5437 -7.1745 -7.0332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733777551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:40 Heat of formation + Delta-G solvation = 12.527017 kcal Electronic energy + Delta-G solvation = -27827.278307 eV Core-core repulsion = 24109.497700 eV Total energy + Delta-G solvation = -3717.780608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85487 -40.13067 -38.23324 -37.50718 -36.82229 -34.02422 -32.82228 -31.16808 -28.55448 -28.27624 -28.10961 -27.93399 -27.58299 -26.16038 -24.23084 -22.88144 -22.36086 -20.51211 -20.21545 -19.24353 -18.76608 -17.57633 -17.45655 -17.06016 -16.87594 -16.41733 -15.95741 -15.67873 -15.35204 -15.12957 -15.02517 -14.99290 -14.46985 -14.43863 -14.24390 -14.07679 -13.94927 -13.49209 -13.40793 -13.13373 -13.03664 -12.99737 -12.77619 -12.75043 -12.53759 -12.51962 -12.41039 -12.31004 -12.23041 -11.94117 -11.81781 -11.76914 -11.38121 -11.28101 -10.67905 -10.65799 -10.47668 -10.01029 -9.67856 -8.76240 -8.24551 -5.67510 -0.55572 0.21489 0.57207 0.86566 1.27338 1.34192 1.47402 1.94378 2.19916 2.38273 2.79205 3.00940 3.40478 3.50791 3.85214 3.97160 4.00674 4.03424 4.15741 4.21387 4.31050 4.33673 4.40246 4.49338 4.60035 4.64100 4.69516 4.73060 4.77936 4.81190 4.82607 4.92241 4.99282 5.03688 5.03979 5.07495 5.09893 5.16273 5.18204 5.31376 5.36322 5.43779 5.45043 5.56269 5.90741 6.10967 6.19752 6.42217 6.95540 6.99710 7.58510 8.00177 8.95121 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.002719 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.203253 B =10293.697068 C =10883.598127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.629 5.629 3 C -0.263 4.263 4 H 0.035 0.965 5 C -0.026 4.026 6 N -0.953 5.953 7 Si 0.952 3.048 8 H -0.276 1.276 9 H -0.306 1.306 10 H -0.249 1.249 11 C 0.134 3.866 12 C -0.127 4.127 13 C 0.118 3.882 14 N -0.596 5.596 15 C 0.078 3.922 16 C 0.573 3.427 17 O -0.583 6.583 18 C -0.006 4.006 19 C -0.255 4.255 20 S 0.290 5.710 21 C 0.024 3.976 22 C 0.013 3.987 23 C -0.136 4.136 24 C -0.157 4.157 25 C -0.133 4.133 26 N -0.442 5.442 27 H 0.020 0.980 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.027 0.973 33 H 0.016 0.984 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.179 0.821 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -25.073 -22.949 34.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.354 5.354 3 C -0.393 4.393 4 H 0.053 0.947 5 C -0.222 4.222 6 N -0.597 5.597 7 Si 0.780 3.220 8 H -0.204 1.204 9 H -0.234 1.234 10 H -0.173 1.173 11 C 0.008 3.992 12 C -0.168 4.168 13 C -0.005 4.005 14 N -0.326 5.326 15 C -0.064 4.064 16 C 0.360 3.640 17 O -0.464 6.464 18 C -0.141 4.141 19 C -0.398 4.398 20 S 0.551 5.449 21 C -0.255 4.255 22 C 0.009 3.991 23 C -0.194 4.194 24 C -0.215 4.215 25 C -0.191 4.191 26 N -0.157 5.157 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.196 0.804 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.106 0.894 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.355 -24.807 -23.240 34.074 hybrid contribution 0.692 0.934 2.096 2.396 sum -1.663 -23.873 -21.145 31.934 Atomic orbital electron populations 1.21195 0.81869 1.00268 0.98665 1.44205 1.02595 1.01342 1.87231 1.18659 1.07790 0.91947 1.20901 0.94735 1.26238 0.97030 0.98608 1.00308 1.69981 1.11501 1.37137 1.41104 0.85740 0.78555 0.78223 0.79463 1.20377 1.23424 1.17309 1.21228 0.95627 0.87635 0.94684 1.22217 0.99697 0.95584 0.99319 1.21547 1.00397 0.96675 0.81853 1.47832 1.20515 1.49989 1.14243 1.22419 0.90722 0.93643 0.99609 1.17768 0.81927 0.78995 0.85356 1.90826 1.45920 1.41880 1.67733 1.20143 0.96041 1.02063 0.95841 1.26887 1.04174 1.07401 1.01318 1.82432 1.22319 1.34902 1.05271 1.28079 0.99565 1.02649 0.95222 1.19426 0.94738 0.92987 0.91953 1.21874 0.93284 1.01458 1.02806 1.22095 1.01382 1.03812 0.94206 1.21848 1.02491 0.93093 1.01700 1.67147 1.26908 1.15213 1.06473 0.96202 0.94408 0.91974 0.92891 0.90092 0.95461 0.96456 0.90782 0.86462 0.92802 0.91652 0.90167 0.87911 0.80387 0.92897 0.89322 0.92622 0.91305 0.88483 0.91514 0.92673 0.89411 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.93 10.70 127.77 1.37 6.29 16 2 N -0.63 -31.44 2.45 -726.94 -1.78 -33.22 16 3 C -0.26 -16.10 9.90 84.03 0.83 -15.26 16 4 H 0.03 2.35 8.06 -2.91 -0.02 2.32 16 5 C -0.03 -1.62 5.34 84.86 0.45 -1.16 16 6 N -0.95 -64.29 13.97 21.65 0.30 -63.98 16 7 Si 0.95 49.73 25.05 68.60 1.72 51.45 16 8 H -0.28 -14.06 6.59 99.48 0.66 -13.40 16 9 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 10 H -0.25 -12.04 7.11 99.48 0.71 -11.34 16 11 C 0.13 5.88 4.49 86.38 0.39 6.27 16 12 C -0.13 -5.16 5.86 30.59 0.18 -4.98 16 13 C 0.12 4.07 5.41 86.38 0.47 4.54 16 14 N -0.60 -19.40 2.87 -850.84 -2.44 -21.84 16 15 C 0.08 1.79 9.48 127.77 1.21 3.00 16 16 C 0.57 21.70 7.65 86.62 0.66 22.36 16 17 O -0.58 -27.64 16.29 -4.13 -0.07 -27.71 16 18 C -0.01 -0.18 6.49 40.56 0.26 0.08 16 19 C -0.25 -6.59 10.62 67.12 0.71 -5.88 16 20 S 0.29 4.53 21.28 -56.49 -1.20 3.33 16 21 C 0.02 0.41 5.74 88.57 0.51 0.91 16 22 C 0.01 0.13 0.99 -52.93 -0.05 0.08 16 23 C -0.14 -1.35 8.45 71.98 0.61 -0.74 16 24 C -0.16 -0.88 7.53 71.98 0.54 -0.34 16 25 C -0.13 -1.22 8.45 71.98 0.61 -0.61 16 26 N -0.44 -10.24 6.73 -180.84 -1.22 -11.46 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 1.52 8.00 -2.39 -0.02 1.50 16 29 H 0.06 2.01 8.11 -2.39 -0.02 1.99 16 30 H 0.26 16.77 8.31 -92.71 -0.77 16.00 16 31 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 32 H 0.03 1.37 3.26 -2.39 -0.01 1.36 16 33 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.12 3.00 8.07 -2.39 -0.02 2.98 16 36 H 0.05 2.18 7.38 -2.38 -0.02 2.16 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.54 8.03 -2.39 -0.02 1.52 16 39 H 0.10 2.42 5.24 -2.38 -0.01 2.41 16 40 H 0.18 4.81 8.04 -2.91 -0.02 4.79 16 41 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.34 7.91 -2.39 -0.02 0.33 16 45 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.07 0.37 7.91 -2.39 -0.02 0.35 16 47 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -84.24 402.49 4.93 -79.32 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.87 Total: 9.57 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 8.75 Total: 14.55 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -5.14 Total: -130.50 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.07 Total: -27.71 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 1.72 Total: 51.45 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.20 Total: 3.33 kcal Total: -84.24 4.93 -79.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733777551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.843 kcal (2) G-P(sol) polarization free energy of solvation -84.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds