Wall clock time and date at job start Tue Mar 31 2020 23:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99909 * 2 1 4 4 C 1.50697 * 119.99852 * 180.02562 * 2 1 3 5 5 N 1.46899 * 109.47267 * 95.00101 * 4 2 1 6 6 C 1.47957 * 110.99978 * 169.99880 * 5 4 2 7 7 C 1.53936 * 86.18106 * 222.41217 * 6 5 4 8 8 N 1.46904 * 113.73302 * 138.07467 * 7 6 5 9 9 C 1.46895 * 111.00495 * 301.20695 * 8 7 6 10 10 C 1.53228 * 109.34167 * 172.74386 * 9 8 7 11 11 N 1.47083 * 108.52212 * 53.83090 * 10 9 8 12 12 C 1.34776 * 120.88284 * 128.79018 * 11 10 9 13 13 O 1.21278 * 120.00426 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99766 * 0.02718 * 12 11 10 15 15 S 1.81005 * 109.46871 * 179.97438 * 14 12 11 16 16 C 1.76205 * 99.99745 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00076 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99692 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00270 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99745 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46944 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47266 * 120.00029 * 20 18 16 23 23 H 1.48499 * 109.46615 * 239.99470 * 20 18 16 24 24 C 1.47072 * 118.23733 * 308.81485 * 11 10 9 25 25 C 1.46906 * 110.99831 * 176.90377 * 8 7 6 26 26 C 1.48187 * 111.07308 * 70.56423 * 5 4 2 27 27 H 1.07995 * 120.00022 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99560 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47099 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47210 * 300.00109 * 3 2 1 31 31 H 1.09001 * 109.47152 * 60.00521 * 3 2 1 32 32 H 1.08999 * 109.47436 * 334.99615 * 4 2 1 33 33 H 1.08999 * 109.47095 * 214.99626 * 4 2 1 34 34 H 1.09000 * 113.76247 * 108.10194 * 6 5 4 35 35 H 1.09002 * 113.86419 * 336.74300 * 6 5 4 36 36 H 1.09001 * 113.73830 * 269.25916 * 7 6 5 37 37 H 1.08997 * 109.49089 * 292.70978 * 9 8 7 38 38 H 1.09007 * 109.49281 * 52.78116 * 9 8 7 39 39 H 1.08995 * 109.63228 * 294.12148 * 10 9 8 40 40 H 1.09002 * 109.63099 * 173.54032 * 10 9 8 41 41 H 1.09004 * 109.47000 * 299.99595 * 14 12 11 42 42 H 1.09000 * 109.47613 * 59.99780 * 14 12 11 43 43 H 0.97001 * 120.00433 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.62875 * 291.47435 * 24 11 10 45 45 H 1.09006 * 109.78964 * 170.98862 * 24 11 10 46 46 H 1.08997 * 109.49116 * 307.21603 * 25 8 7 47 47 H 1.08996 * 109.49290 * 67.29548 * 25 8 7 48 48 H 1.08996 * 113.75716 * 23.23731 * 26 5 4 49 49 H 1.09003 * 113.82406 * 251.81425 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3804 6 6 3.3529 -2.8105 -1.4063 7 6 4.1000 -2.0379 -2.5084 8 7 5.5622 -2.0798 -2.3725 9 6 5.9871 -1.5227 -1.0814 10 6 7.4919 -1.7488 -0.9017 11 7 8.1900 -1.2017 -2.0751 12 6 9.2240 -0.3496 -1.9298 13 8 9.7879 0.0923 -2.9084 14 6 9.6797 0.0541 -0.5512 15 16 11.0766 1.1971 -0.6881 16 6 11.3952 1.4965 1.0188 17 1 10.7900 1.0163 1.7735 18 6 12.4241 2.3496 1.3934 19 7 13.1620 2.9345 0.4737 20 14 12.7624 2.6665 3.2031 21 1 11.7997 1.8946 4.0291 22 1 14.1474 2.2419 3.5295 23 1 12.6086 4.1156 3.4889 24 6 7.7293 -1.6087 -3.4112 25 6 6.2150 -1.3881 -3.4921 26 6 3.4593 -0.7681 -1.9196 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 3.1351 1.1059 -0.0005 30 1 1.8001 1.8767 -0.8900 31 1 1.8002 1.8766 0.8900 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5888 34 1 2.9032 -3.7417 -1.7507 35 1 3.9271 -2.9300 -0.4875 36 1 3.7602 -2.2736 -3.5169 37 1 5.7745 -0.4539 -1.0588 38 1 5.4460 -2.0186 -0.2754 39 1 7.6947 -2.8166 -0.8201 40 1 7.8340 -1.2385 -0.0013 41 1 8.8593 0.5437 -0.0262 42 1 9.9887 -0.8319 0.0034 43 1 13.8812 3.5304 0.7355 44 1 7.9547 -2.6631 -3.5708 45 1 8.2279 -1.0084 -4.1722 46 1 5.8392 -1.7864 -4.4345 47 1 5.9993 -0.3212 -3.4359 48 1 4.0637 -0.2872 -1.1505 49 1 3.0943 -0.0703 -2.6733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733878421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:33 Heat of formation + Delta-G solvation = 40.537392 kcal Electronic energy + Delta-G solvation = -27489.252702 eV Core-core repulsion = 23772.686716 eV Total energy + Delta-G solvation = -3716.565987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15255 -39.58119 -37.45716 -35.83488 -33.90462 -32.45284 -31.67190 -29.86930 -29.01479 -27.76860 -26.55459 -26.41686 -25.49314 -24.02100 -23.60455 -21.68300 -19.80576 -18.94032 -18.72882 -17.71821 -17.14163 -16.42651 -16.21699 -15.64898 -15.55936 -15.40935 -15.32484 -14.85759 -14.82807 -14.49773 -14.01836 -13.82619 -13.58802 -13.29619 -13.20505 -13.17784 -12.94136 -12.74975 -12.56462 -12.29669 -12.07464 -11.92559 -11.62956 -11.48875 -11.38046 -11.31421 -11.13264 -11.09237 -11.03713 -10.81343 -10.74729 -9.81938 -9.53187 -9.39084 -9.15401 -9.09808 -8.81683 -8.39983 -8.24781 -6.52779 -6.24048 -3.94791 1.83577 2.87028 3.01447 3.19554 3.22741 3.28605 3.35539 3.57046 3.74146 4.12246 4.17681 4.33014 4.40615 4.53537 4.56708 4.73527 4.80238 4.89278 4.94704 4.97981 5.03978 5.09338 5.11225 5.14841 5.20295 5.24429 5.29604 5.32606 5.35713 5.41184 5.48721 5.51212 5.54788 5.61174 5.64735 5.71690 5.77623 5.84253 5.88571 5.92938 6.07399 6.25338 6.48970 6.52125 6.59070 6.66554 6.71566 7.53580 7.57529 8.32848 8.52795 9.21327 10.83410 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.002572 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.191099 B =10882.510783 C =12515.503995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.124 4.124 3 C -0.121 4.121 4 C 0.057 3.943 5 N -0.470 5.470 6 C 0.007 3.993 7 C 0.062 3.938 8 N -0.525 5.525 9 C 0.034 3.966 10 C 0.115 3.885 11 N -0.622 5.622 12 C 0.535 3.465 13 O -0.517 6.517 14 C -0.150 4.150 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.118 3.882 25 C 0.044 3.956 26 C -0.035 4.035 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.079 0.921 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.312 -11.401 -2.662 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.124 4.124 3 C -0.178 4.178 4 C -0.071 4.071 5 N -0.193 5.193 6 C -0.122 4.122 7 C -0.047 4.047 8 N -0.249 5.249 9 C -0.094 4.094 10 C -0.009 4.009 11 N -0.359 5.359 12 C 0.323 3.677 13 O -0.391 6.391 14 C -0.301 4.301 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.005 4.005 25 C -0.084 4.084 26 C -0.166 4.166 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.105 0.895 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.774 -11.163 -4.485 26.645 hybrid contribution -0.142 0.622 2.954 3.023 sum -23.916 -10.541 -1.531 26.181 Atomic orbital electron populations 1.23647 0.95169 1.01821 1.00997 1.21562 0.95463 0.94956 1.00408 1.20907 0.99912 0.94761 1.02194 1.21673 0.99216 0.95320 0.90935 1.68607 1.29003 1.04071 1.17582 1.24158 0.92983 0.96414 0.98641 1.23679 0.86277 0.94558 1.00231 1.61929 1.05486 1.55112 1.02355 1.22647 0.96310 0.98378 0.92075 1.21780 0.90245 0.99902 0.89001 1.48152 1.33689 1.47304 1.06739 1.20336 0.78652 0.77233 0.91459 1.90692 1.54358 1.53333 1.40692 1.23546 1.05454 1.05167 0.95902 1.85425 1.33402 1.53898 1.10716 1.22889 1.20657 1.33019 0.91692 0.90920 1.24997 0.94978 0.94896 0.98734 1.70024 1.18917 1.28360 1.32931 0.86119 0.78306 0.78177 0.82907 1.19617 1.20533 1.20572 1.21602 0.92530 1.00894 0.85493 1.22484 0.94743 0.97082 0.94127 1.24781 0.93634 0.97636 1.00504 0.88495 0.88382 0.92230 0.91484 0.91446 0.90049 0.93542 0.88806 0.90626 0.86852 0.93668 0.89773 0.90654 0.88910 0.89455 0.89245 0.92215 0.91064 0.88522 0.89475 0.94030 0.90264 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 13.93 29.01 0.40 -0.92 16 2 C -0.12 -0.99 5.32 -101.07 -0.54 -1.52 16 3 C -0.12 -0.92 9.38 36.00 0.34 -0.58 16 4 C 0.06 0.44 4.93 -4.98 -0.02 0.41 16 5 N -0.47 -3.80 6.25 -239.68 -1.50 -5.30 16 6 C 0.01 0.05 7.46 -2.76 -0.02 0.03 16 7 C 0.06 0.47 4.03 -69.40 -0.28 0.19 16 8 N -0.53 -4.58 4.76 -227.75 -1.08 -5.67 16 9 C 0.03 0.31 4.47 -3.71 -0.02 0.29 16 10 C 0.11 1.24 6.50 -3.61 -0.02 1.21 16 11 N -0.62 -8.74 3.01 -172.47 -0.52 -9.26 16 12 C 0.54 10.10 7.73 -10.98 -0.08 10.02 16 13 O -0.52 -11.74 15.32 5.56 0.09 -11.66 16 14 C -0.15 -3.02 4.52 36.01 0.16 -2.85 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.53 -15.08 9.50 30.94 0.29 -14.78 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 20 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.12 1.41 6.59 -3.61 -0.02 1.38 16 25 C 0.04 0.42 5.61 -3.70 -0.02 0.40 16 26 C -0.04 -0.28 6.08 -2.63 -0.02 -0.30 16 27 H 0.10 0.64 8.05 -52.49 -0.42 0.22 16 28 H 0.10 0.68 7.99 -52.49 -0.42 0.26 16 29 H 0.06 0.47 6.60 -51.93 -0.34 0.13 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.59 7.99 -51.93 -0.41 0.17 16 33 H 0.05 0.35 7.70 -51.93 -0.40 -0.05 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.52 5.88 -51.93 -0.31 0.22 16 36 H 0.11 0.83 8.04 -51.93 -0.42 0.42 16 37 H 0.05 0.45 6.45 -51.93 -0.33 0.12 16 38 H 0.08 0.64 6.06 -51.93 -0.31 0.32 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.00 6.02 -51.93 -0.31 0.69 16 41 H 0.09 1.62 7.66 -51.91 -0.40 1.22 16 42 H 0.09 1.67 8.00 -51.92 -0.42 1.25 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 1.30 7.07 -51.93 -0.37 0.94 16 46 H 0.09 0.67 8.04 -51.93 -0.42 0.26 16 47 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.68 4.08 -51.93 -0.21 0.47 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -33.39 394.27 -11.52 -44.91 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.00 Total: -0.97 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 0.06 Total: -5.05 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -2.37 Total: -45.52 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.39 -11.52 -44.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733878421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.444 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds