Wall clock time and date at job start Tue Mar 31 2020 23:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99909 * 2 1 4 4 C 1.50697 * 119.99852 * 180.02562 * 2 1 3 5 5 N 1.46899 * 109.47267 * 95.00101 * 4 2 1 6 6 C 1.47957 * 110.99978 * 169.99880 * 5 4 2 7 7 C 1.53936 * 86.18106 * 222.41217 * 6 5 4 8 8 N 1.46904 * 113.73302 * 138.07467 * 7 6 5 9 9 C 1.46895 * 111.00495 * 301.20695 * 8 7 6 10 10 C 1.53228 * 109.34167 * 172.74386 * 9 8 7 11 11 N 1.47083 * 108.52212 * 53.83090 * 10 9 8 12 12 C 1.34776 * 120.88284 * 128.79018 * 11 10 9 13 13 O 1.21278 * 120.00426 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99766 * 0.02718 * 12 11 10 15 15 S 1.81005 * 109.46871 * 179.97438 * 14 12 11 16 16 C 1.76205 * 99.99745 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00076 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99692 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00270 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99745 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46944 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47266 * 120.00029 * 20 18 16 23 23 H 1.48499 * 109.46615 * 239.99470 * 20 18 16 24 24 C 1.47072 * 118.23733 * 308.81485 * 11 10 9 25 25 C 1.46906 * 110.99831 * 176.90377 * 8 7 6 26 26 C 1.48187 * 111.07308 * 70.56423 * 5 4 2 27 27 H 1.07995 * 120.00022 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99560 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47099 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47210 * 300.00109 * 3 2 1 31 31 H 1.09001 * 109.47152 * 60.00521 * 3 2 1 32 32 H 1.08999 * 109.47436 * 334.99615 * 4 2 1 33 33 H 1.08999 * 109.47095 * 214.99626 * 4 2 1 34 34 H 1.09000 * 113.76247 * 108.10194 * 6 5 4 35 35 H 1.09002 * 113.86419 * 336.74300 * 6 5 4 36 36 H 1.09001 * 113.73830 * 269.25916 * 7 6 5 37 37 H 1.08997 * 109.49089 * 292.70978 * 9 8 7 38 38 H 1.09007 * 109.49281 * 52.78116 * 9 8 7 39 39 H 1.08995 * 109.63228 * 294.12148 * 10 9 8 40 40 H 1.09002 * 109.63099 * 173.54032 * 10 9 8 41 41 H 1.09004 * 109.47000 * 299.99595 * 14 12 11 42 42 H 1.09000 * 109.47613 * 59.99780 * 14 12 11 43 43 H 0.97001 * 120.00433 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.62875 * 291.47435 * 24 11 10 45 45 H 1.09006 * 109.78964 * 170.98862 * 24 11 10 46 46 H 1.08997 * 109.49116 * 307.21603 * 25 8 7 47 47 H 1.08996 * 109.49290 * 67.29548 * 25 8 7 48 48 H 1.08996 * 113.75716 * 23.23731 * 26 5 4 49 49 H 1.09003 * 113.82406 * 251.81425 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3804 6 6 3.3529 -2.8105 -1.4063 7 6 4.1000 -2.0379 -2.5084 8 7 5.5622 -2.0798 -2.3725 9 6 5.9871 -1.5227 -1.0814 10 6 7.4919 -1.7488 -0.9017 11 7 8.1900 -1.2017 -2.0751 12 6 9.2240 -0.3496 -1.9298 13 8 9.7879 0.0923 -2.9084 14 6 9.6797 0.0541 -0.5512 15 16 11.0766 1.1971 -0.6881 16 6 11.3952 1.4965 1.0188 17 1 10.7900 1.0163 1.7735 18 6 12.4241 2.3496 1.3934 19 7 13.1620 2.9345 0.4737 20 14 12.7624 2.6665 3.2031 21 1 11.7997 1.8946 4.0291 22 1 14.1474 2.2419 3.5295 23 1 12.6086 4.1156 3.4889 24 6 7.7293 -1.6087 -3.4112 25 6 6.2150 -1.3881 -3.4921 26 6 3.4593 -0.7681 -1.9196 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 3.1351 1.1059 -0.0005 30 1 1.8001 1.8767 -0.8900 31 1 1.8002 1.8766 0.8900 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5888 34 1 2.9032 -3.7417 -1.7507 35 1 3.9271 -2.9300 -0.4875 36 1 3.7602 -2.2736 -3.5169 37 1 5.7745 -0.4539 -1.0588 38 1 5.4460 -2.0186 -0.2754 39 1 7.6947 -2.8166 -0.8201 40 1 7.8340 -1.2385 -0.0013 41 1 8.8593 0.5437 -0.0262 42 1 9.9887 -0.8319 0.0034 43 1 13.8812 3.5304 0.7355 44 1 7.9547 -2.6631 -3.5708 45 1 8.2279 -1.0084 -4.1722 46 1 5.8392 -1.7864 -4.4345 47 1 5.9993 -0.3212 -3.4359 48 1 4.0637 -0.2872 -1.1505 49 1 3.0943 -0.0703 -2.6733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733878421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:33 Heat of formation + Delta-G solvation = 16.317437 kcal Electronic energy + Delta-G solvation = -27490.302958 eV Core-core repulsion = 23772.686716 eV Total energy + Delta-G solvation = -3717.616243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87187 -40.78117 -38.47104 -36.56762 -34.89083 -34.59185 -32.63366 -30.96018 -30.03886 -28.39435 -27.76608 -27.33878 -27.00652 -24.90098 -24.30090 -22.66678 -20.75944 -20.00183 -19.53493 -19.27671 -18.31267 -17.27249 -17.11310 -16.89712 -16.81543 -16.68848 -16.22401 -16.02757 -15.83183 -15.55043 -15.27113 -14.74767 -14.56707 -14.49530 -14.33266 -14.02564 -13.85567 -13.63838 -13.43999 -13.42038 -13.17376 -13.05898 -12.92415 -12.65768 -12.61687 -12.47877 -12.24443 -12.10295 -12.09369 -11.73325 -11.70313 -11.42684 -11.16772 -10.90616 -10.27411 -10.12282 -9.87637 -9.71552 -9.27323 -8.68672 -8.35546 -6.14024 1.24037 1.25651 1.41001 1.44948 1.54240 1.56492 2.05006 2.26201 2.64413 2.98802 3.12365 3.22989 3.50636 3.59821 3.71265 3.81160 3.90427 3.96036 4.02452 4.10370 4.19423 4.23022 4.27212 4.35925 4.37988 4.42056 4.42966 4.51428 4.54976 4.66099 4.69624 4.71010 4.77487 4.80307 4.81311 4.87391 4.97135 5.00964 5.05045 5.10691 5.31548 5.41180 5.46905 5.68133 5.88397 5.92284 5.94958 6.04030 6.19129 6.27435 7.05794 7.10640 8.73951 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.002572 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.191099 B =10882.510783 C =12515.503995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.137 4.137 3 C -0.119 4.119 4 C 0.058 3.942 5 N -0.479 5.479 6 C 0.013 3.987 7 C 0.066 3.934 8 N -0.522 5.522 9 C 0.040 3.960 10 C 0.108 3.892 11 N -0.609 5.609 12 C 0.533 3.467 13 O -0.566 6.566 14 C -0.123 4.123 15 S -0.153 6.153 16 C -0.543 4.543 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.115 3.885 25 C 0.053 3.947 26 C -0.033 4.033 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.110 0.890 47 H 0.028 0.972 48 H 0.075 0.925 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.383 -13.166 -0.957 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.137 4.137 3 C -0.176 4.176 4 C -0.070 4.070 5 N -0.201 5.201 6 C -0.116 4.116 7 C -0.043 4.043 8 N -0.246 5.246 9 C -0.088 4.088 10 C -0.015 4.015 11 N -0.344 5.344 12 C 0.321 3.679 13 O -0.445 6.445 14 C -0.274 4.274 15 S 0.074 5.926 16 C -0.691 4.691 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.007 4.007 25 C -0.075 4.075 26 C -0.163 4.163 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.053 0.947 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.128 0.872 47 H 0.046 0.954 48 H 0.093 0.907 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.905 -12.973 -2.772 29.104 hybrid contribution 0.359 1.076 2.362 2.620 sum -25.546 -11.897 -0.411 28.184 Atomic orbital electron populations 1.23780 0.95134 1.02382 1.00309 1.21680 0.95790 0.95198 1.01047 1.20887 0.99586 0.94850 1.02280 1.21673 0.99310 0.95289 0.90738 1.68607 1.29227 1.04401 1.17912 1.24166 0.92581 0.96326 0.98497 1.23705 0.85294 0.94419 1.00907 1.61950 1.06217 1.54547 1.01836 1.22605 0.95077 0.98137 0.93008 1.22074 0.91088 1.00719 0.87580 1.48163 1.31970 1.45348 1.08910 1.20133 0.79624 0.77957 0.90193 1.90675 1.56475 1.55632 1.41689 1.23354 1.02684 1.03865 0.97467 1.85619 1.37860 1.56997 1.12090 1.23209 1.21023 1.33224 0.91626 0.89865 1.26140 0.94545 0.94393 1.04136 1.70189 1.19698 1.29258 1.35669 0.84900 0.78467 0.78270 0.76280 1.17881 1.19955 1.19989 1.21764 0.94047 1.01213 0.83710 1.22393 0.92923 0.96585 0.95642 1.24708 0.93704 0.97663 1.00229 0.87946 0.87894 0.92700 0.91735 0.91054 0.89547 0.93442 0.87960 0.90091 0.86192 0.94686 0.87619 0.88822 0.88755 0.87627 0.87412 0.91998 0.89459 0.90565 0.87170 0.95399 0.90748 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 13.93 67.78 0.94 -1.45 16 2 C -0.14 -1.99 5.32 -16.49 -0.09 -2.08 16 3 C -0.12 -1.71 9.38 71.23 0.67 -1.04 16 4 C 0.06 0.78 4.93 85.56 0.42 1.20 16 5 N -0.48 -6.72 6.25 -912.21 -5.70 -12.42 16 6 C 0.01 0.15 7.46 86.41 0.64 0.79 16 7 C 0.07 0.83 4.03 46.48 0.19 1.02 16 8 N -0.52 -7.69 4.76 -874.46 -4.16 -11.85 16 9 C 0.04 0.62 4.47 86.38 0.39 1.00 16 10 C 0.11 2.05 6.50 86.34 0.56 2.61 16 11 N -0.61 -16.40 3.01 -817.96 -2.46 -18.87 16 12 C 0.53 20.20 7.73 87.66 0.68 20.88 16 13 O -0.57 -26.67 15.32 -3.02 -0.05 -26.72 16 14 C -0.12 -4.89 4.52 71.24 0.32 -4.57 16 15 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 16 C -0.54 -30.80 9.50 67.96 0.65 -30.15 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 20 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 C 0.12 2.61 6.59 86.35 0.57 3.18 16 25 C 0.05 0.91 5.61 86.38 0.49 1.39 16 26 C -0.03 -0.47 6.08 86.37 0.53 0.06 16 27 H 0.10 1.22 8.05 -2.91 -0.02 1.20 16 28 H 0.10 1.26 7.99 -2.91 -0.02 1.23 16 29 H 0.05 0.82 6.60 -2.39 -0.02 0.80 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.06 7.99 -2.39 -0.02 1.04 16 33 H 0.05 0.62 7.70 -2.39 -0.02 0.60 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.84 5.88 -2.39 -0.01 0.82 16 36 H 0.12 1.42 8.04 -2.39 -0.02 1.40 16 37 H 0.03 0.64 6.45 -2.39 -0.02 0.62 16 38 H 0.11 1.23 6.06 -2.38 -0.01 1.22 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.79 6.02 -2.39 -0.01 1.78 16 41 H 0.11 3.80 7.66 -2.39 -0.02 3.78 16 42 H 0.11 3.88 8.00 -2.40 -0.02 3.86 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.09 7.07 -2.38 -0.02 2.07 16 46 H 0.11 1.42 8.04 -2.39 -0.02 1.40 16 47 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.07 1.16 4.08 -2.39 -0.01 1.15 16 49 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -74.44 394.27 -2.87 -77.31 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.93 Total: 18.56 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 7.42 Total: -5.98 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -12.04 Total: -98.79 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -74.44 -2.87 -77.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733878421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.628 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds