Wall clock time and date at job start Tue Mar 31 2020 22:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29435 * 124.80236 * 2 1 4 4 C 1.30946 * 117.36433 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.90321 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47177 * 269.99906 * 5 4 3 7 7 C 1.52999 * 109.47135 * 175.00140 * 6 5 4 8 8 C 1.52997 * 109.47108 * 295.00225 * 6 5 4 9 9 C 1.35663 * 114.19098 * 359.97438 * 4 3 2 10 10 C 1.46677 * 126.13260 * 179.97438 * 9 4 3 11 11 O 1.21690 * 119.99502 * 359.97438 * 10 9 4 12 12 N 1.34776 * 120.00382 * 180.02562 * 10 9 4 13 13 C 1.46501 * 120.00080 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46961 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47070 * 294.99963 * 14 13 12 16 16 C 1.53004 * 109.46964 * 175.00199 * 14 13 12 17 17 N 1.46496 * 109.47140 * 55.00352 * 14 13 12 18 18 C 1.46502 * 119.99822 * 59.99693 * 17 14 13 19 19 C 1.36938 * 120.00132 * 239.99905 * 17 14 13 20 20 H 1.07998 * 119.99969 * 20.36192 * 19 17 14 21 21 C 1.38808 * 119.99909 * 200.36346 * 19 17 14 22 22 N 1.31619 * 120.00068 * 15.05019 * 21 19 17 23 23 Si 1.86800 * 119.99934 * 195.04986 * 21 19 17 24 24 H 1.48507 * 109.47204 * 84.82512 * 23 21 19 25 25 H 1.48499 * 109.47108 * 204.82543 * 23 21 19 26 26 H 1.48495 * 109.47245 * 324.82659 * 23 21 19 27 27 S 1.70955 * 124.80917 * 180.26791 * 2 1 3 28 28 H 1.09000 * 109.46729 * 90.00735 * 1 2 3 29 29 H 1.09000 * 109.46794 * 209.99775 * 1 2 3 30 30 H 1.08993 * 109.47370 * 330.00660 * 1 2 3 31 31 H 1.08999 * 109.47418 * 30.00107 * 5 4 3 32 32 H 1.09000 * 109.46743 * 150.00258 * 5 4 3 33 33 H 1.09004 * 109.46601 * 55.00248 * 6 5 4 34 34 H 1.08996 * 109.47079 * 59.99906 * 7 6 5 35 35 H 1.09005 * 109.47003 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47159 * 300.00073 * 7 6 5 37 37 H 1.08999 * 109.47049 * 59.99916 * 8 6 5 38 38 H 1.09005 * 109.47071 * 179.97438 * 8 6 5 39 39 H 1.08996 * 109.47005 * 300.00031 * 8 6 5 40 40 H 0.96995 * 119.99562 * 0.02562 * 12 10 9 41 41 H 1.09010 * 109.46847 * 60.00285 * 13 12 10 42 42 H 1.08995 * 109.47261 * 300.00219 * 13 12 10 43 43 H 1.09001 * 109.46988 * 60.00072 * 16 14 13 44 44 H 1.09001 * 109.47106 * 300.00332 * 16 14 13 45 45 H 1.08995 * 109.46821 * 179.97438 * 16 14 13 46 46 H 1.08994 * 109.47227 * 95.15937 * 18 17 14 47 47 H 1.08998 * 109.47073 * 215.15600 * 18 17 14 48 48 H 1.09004 * 109.47347 * 335.15824 * 18 17 14 49 49 H 0.97000 * 119.99706 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5442 0.8933 0.0005 5 6 4.5197 2.0419 0.0000 6 6 4.8503 2.4296 -1.4427 7 6 5.7416 3.6732 -1.4451 8 6 5.5849 1.2744 -2.1257 9 6 3.9352 -0.4057 0.0015 10 6 5.3189 -0.8925 0.0018 11 8 6.2425 -0.1001 0.0006 12 7 5.5674 -2.2171 0.0023 13 6 6.9494 -2.7032 0.0020 14 6 6.9519 -4.2332 0.0034 15 1 6.5187 -4.5964 0.9354 16 6 8.3897 -4.7409 -0.1226 17 7 6.1599 -4.7238 -1.1272 18 6 6.5413 -4.3704 -2.4968 19 6 5.0631 -5.5127 -0.9037 20 1 4.5849 -5.5109 0.0646 21 6 4.5660 -6.3147 -1.9218 22 7 5.2974 -6.5506 -2.9904 23 14 2.8590 -7.0591 -1.7754 24 1 1.8487 -6.0768 -2.2442 25 1 2.7808 -8.2857 -2.6088 26 1 2.5906 -7.4065 -0.3568 27 16 2.4829 -1.4036 -0.0066 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 4.0765 2.8953 0.5131 32 1 5.4331 1.7430 0.5143 33 1 3.9274 2.6430 -1.9821 34 1 6.6644 3.4599 -0.9056 35 1 5.9768 3.9497 -2.4729 36 1 5.2182 4.4963 -0.9585 37 1 4.9500 0.3884 -2.1239 38 1 5.8201 1.5504 -3.1536 39 1 6.5077 1.0610 -1.5862 40 1 4.8311 -2.8486 0.0022 41 1 7.4630 -2.3385 0.8917 42 1 7.4623 -2.3394 -0.8883 43 1 8.9790 -4.3759 0.7186 44 1 8.8229 -4.3777 -1.0545 45 1 8.3915 -5.8309 -0.1212 46 1 7.1543 -5.1661 -2.9200 47 1 5.6440 -4.2421 -3.1022 48 1 7.1093 -3.4401 -2.4873 49 1 4.9498 -7.1107 -3.7019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734045060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:41 Heat of formation + Delta-G solvation = 13.561180 kcal Electronic energy + Delta-G solvation = -28634.332176 eV Core-core repulsion = 24916.596412 eV Total energy + Delta-G solvation = -3717.735763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.47875 -38.91948 -36.81917 -35.92973 -33.81628 -32.46013 -31.96455 -29.49114 -28.90126 -27.89318 -26.92096 -26.06918 -25.48095 -23.16156 -23.00150 -21.37518 -20.12831 -19.72011 -18.87168 -17.77826 -16.99305 -16.57065 -15.68458 -15.52754 -15.21429 -15.06155 -14.49394 -14.26750 -14.06778 -13.95385 -13.67680 -13.58674 -12.84552 -12.81365 -12.69251 -12.57740 -12.35101 -12.30450 -12.16491 -12.12585 -11.69992 -11.47521 -11.28807 -11.10035 -10.87473 -10.81421 -10.79462 -10.66677 -10.52294 -10.44912 -10.32931 -9.93020 -9.84272 -9.83035 -9.48443 -9.39267 -8.70252 -8.62526 -8.49904 -6.87794 -5.79607 -3.24833 0.31250 1.23434 1.65485 2.50705 3.31625 3.37547 3.39529 3.39917 3.53665 3.96496 4.41293 4.76498 4.93054 5.06457 5.09512 5.14107 5.23804 5.31079 5.32849 5.35243 5.37096 5.54760 5.63968 5.74631 5.77076 5.83970 5.87184 5.94037 6.05154 6.06206 6.11902 6.14732 6.21362 6.25858 6.38041 6.39499 6.46529 6.62928 6.72918 6.80208 6.86798 7.00694 7.34874 7.64279 7.66063 7.74655 7.91071 8.30214 8.50816 9.15276 9.79010 10.27599 11.24808 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.004342 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.068198 B = 6447.168630 C = 8150.826742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 N -0.479 5.479 4 C 0.146 3.854 5 C -0.050 4.050 6 C -0.080 4.080 7 C -0.142 4.142 8 C -0.149 4.149 9 C -0.288 4.288 10 C 0.589 3.411 11 O -0.530 6.530 12 N -0.700 5.700 13 C 0.108 3.892 14 C 0.157 3.843 15 H 0.068 0.932 16 C -0.156 4.156 17 N -0.594 5.594 18 C 0.166 3.834 19 C -0.263 4.263 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 S 0.178 5.822 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.407 0.593 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.029 0.971 47 H 0.040 0.960 48 H -0.001 1.001 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 14.107 5.954 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.228 4.228 3 N -0.194 5.194 4 C 0.007 3.993 5 C -0.089 4.089 6 C -0.099 4.099 7 C -0.199 4.199 8 C -0.206 4.206 9 C -0.412 4.412 10 C 0.374 3.626 11 O -0.411 6.411 12 N -0.350 5.350 13 C -0.018 4.018 14 C 0.048 3.952 15 H 0.086 0.914 16 C -0.215 4.215 17 N -0.317 5.317 18 C 0.021 3.979 19 C -0.392 4.392 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.546 5.546 23 Si 0.728 3.272 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.205 1.205 27 S 0.436 5.564 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.244 0.756 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.017 0.983 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.376 13.876 5.780 15.656 hybrid contribution -0.827 -0.313 -0.206 0.908 sum -5.203 13.563 5.574 15.559 Atomic orbital electron populations 1.20489 0.84961 1.04338 1.04144 1.27351 1.02059 0.91706 1.01694 1.66059 1.04469 1.31378 1.17516 1.20535 0.89673 0.93412 0.95640 1.20545 0.96932 0.93146 0.98310 1.20936 0.98548 0.95778 0.94648 1.21790 0.99827 0.96767 1.01564 1.22107 1.02035 0.97189 0.99255 1.25595 0.98391 0.97062 1.20143 1.16634 0.85790 0.82864 0.77353 1.90689 1.44335 1.54853 1.51205 1.45825 1.10503 1.05720 1.72963 1.22004 0.81422 0.97277 1.01048 1.20623 0.92093 0.89664 0.92846 0.91373 1.22180 0.97146 1.01862 1.00356 1.44007 1.29720 1.57519 1.00457 1.20719 0.98147 0.93979 0.85052 1.19185 1.03077 1.18437 0.98522 0.91320 1.24943 0.98626 0.97804 0.97843 1.70089 1.35223 1.39913 1.09350 0.86374 0.84739 0.78556 0.77519 1.21320 1.21750 1.20479 1.84371 0.96358 1.10302 1.65355 0.89305 0.89823 0.89161 0.90810 0.87580 0.91958 0.92286 0.92787 0.92998 0.93625 0.94032 0.89800 0.75614 0.92168 0.91777 0.93930 0.93116 0.92169 0.95292 0.94101 0.98291 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.46 36.01 0.38 -0.29 16 2 C 0.05 0.59 7.39 -13.29 -0.10 0.49 16 3 N -0.48 -6.93 10.50 -7.70 -0.08 -7.01 16 4 C 0.15 2.20 5.58 -83.89 -0.47 1.73 16 5 C -0.05 -0.68 4.82 -27.88 -0.13 -0.82 16 6 C -0.08 -1.04 2.91 -90.62 -0.26 -1.31 16 7 C -0.14 -1.54 9.19 37.16 0.34 -1.19 16 8 C -0.15 -2.22 7.63 37.16 0.28 -1.94 16 9 C -0.29 -4.55 5.48 -37.10 -0.20 -4.75 16 10 C 0.59 10.10 6.71 -12.85 -0.09 10.01 16 11 O -0.53 -9.53 10.94 5.20 0.06 -9.48 16 12 N -0.70 -12.21 5.38 -61.62 -0.33 -12.54 16 13 C 0.11 1.86 4.93 -4.04 -0.02 1.84 16 14 C 0.16 2.94 2.87 -67.93 -0.19 2.74 16 15 H 0.07 1.27 7.85 -51.93 -0.41 0.86 16 16 C -0.16 -2.67 9.19 37.16 0.34 -2.33 16 17 N -0.59 -13.55 2.29 -173.48 -0.40 -13.95 16 18 C 0.17 3.91 8.00 59.85 0.48 4.39 16 19 C -0.26 -6.59 9.34 -15.06 -0.14 -6.73 16 20 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 21 C 0.01 0.18 5.06 -17.43 -0.09 0.10 16 22 N -0.90 -25.16 10.67 55.49 0.59 -24.57 16 23 Si 0.90 20.64 29.58 -169.99 -5.03 15.61 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 S 0.18 2.48 22.31 -107.50 -2.40 0.08 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.11 1.57 6.01 -51.93 -0.31 1.26 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.04 0.76 5.79 -51.93 -0.30 0.46 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.36 5.89 -51.93 -0.31 1.06 16 40 H 0.41 7.37 7.07 -40.82 -0.29 7.09 16 41 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 42 H 0.06 1.17 6.87 -51.93 -0.36 0.82 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.88 7.67 -51.93 -0.40 0.48 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 47 H 0.04 1.05 7.22 -51.93 -0.37 0.68 16 48 H 0.00 -0.03 6.54 -51.93 -0.34 -0.37 16 49 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -28.75 394.68 -9.60 -38.35 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.09 Total: 5.62 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 0.12 Total: 1.94 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.22 Total: -58.07 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.48 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.40 Total: 0.08 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.75 -9.60 -38.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734045060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.909 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds