Wall clock time and date at job start Tue Mar 31 2020 23:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35719 * 117.00483 * 2 1 4 4 C 1.39356 * 120.35807 * 359.97438 * 3 2 1 5 5 N 1.31295 * 120.88455 * 179.74703 * 4 3 2 6 6 C 1.32890 * 121.71250 * 0.56408 * 5 4 3 7 7 C 1.47761 * 119.68427 * 179.70952 * 6 5 4 8 8 O 1.21563 * 119.99883 * 179.72992 * 7 6 5 9 9 N 1.34777 * 119.99834 * 359.72691 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72378 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47845 * 304.99688 * 12 11 10 14 14 N 1.46496 * 109.47261 * 65.00505 * 12 11 10 15 15 C 1.36939 * 120.00442 * 205.00190 * 14 12 11 16 16 H 1.08006 * 119.99454 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00698 * 179.97438 * 15 14 12 18 18 N 1.31625 * 119.99442 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00501 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47035 * 59.99782 * 19 17 15 21 21 H 1.48501 * 109.47385 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47244 * 300.00342 * 19 17 15 23 23 C 1.53004 * 109.47072 * 184.99738 * 12 11 10 24 24 C 1.53001 * 109.46847 * 60.00363 * 23 12 11 25 25 C 1.52992 * 109.47392 * 180.02562 * 23 12 11 26 26 C 1.39717 * 120.62672 * 359.43613 * 6 5 4 27 27 F 1.35100 * 120.46373 * 180.29544 * 26 6 5 28 28 C 1.38686 * 119.06933 * 0.27449 * 26 6 5 29 29 H 1.09000 * 109.47446 * 300.00281 * 1 2 3 30 30 H 1.09002 * 109.47179 * 60.00195 * 1 2 3 31 31 H 1.09000 * 109.47625 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.55735 * 0.04368 * 4 3 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 0.97008 * 120.00047 * 24.98902 * 14 12 11 39 39 H 0.97003 * 119.99361 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47409 * 300.00648 * 23 12 11 41 41 H 1.08993 * 109.47286 * 60.00006 * 24 23 12 42 42 H 1.09004 * 109.47425 * 180.02562 * 24 23 12 43 43 H 1.09005 * 109.47241 * 300.00239 * 24 23 12 44 44 H 1.09006 * 109.47329 * 60.00378 * 25 23 12 45 45 H 1.09004 * 109.47552 * 179.97438 * 25 23 12 46 46 H 1.08999 * 109.47825 * 300.00423 * 25 23 12 47 47 H 1.07999 * 120.78989 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2936 2.3827 -0.0005 5 7 1.8790 3.5580 0.0044 6 6 3.2023 3.6792 -0.0010 7 6 3.8139 5.0243 -0.0015 8 8 5.0238 5.1419 -0.0015 9 7 3.0302 6.1209 -0.0021 10 6 3.6366 7.4545 0.0035 11 6 2.5345 8.5158 0.0085 12 6 3.1678 9.9085 0.0150 13 1 3.8548 9.9915 0.8571 14 7 3.9010 10.1174 -1.2359 15 6 4.9390 11.0095 -1.2805 16 1 5.2167 11.5595 -0.3934 17 6 5.6342 11.2071 -2.4656 18 7 5.2960 10.5364 -3.5465 19 14 7.0495 12.4245 -2.5265 20 1 8.0987 12.0127 -1.5595 21 1 7.6222 12.4499 -3.8964 22 1 6.5535 13.7785 -2.1716 23 6 2.0707 10.9670 0.1457 24 6 1.3048 10.7490 1.4522 25 6 2.7038 12.3598 0.1516 26 6 4.0209 2.5469 -0.0004 27 9 5.3659 2.6741 0.0001 28 6 3.4333 1.2907 0.0001 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2151 2.3247 -0.0002 33 1 2.0647 6.0271 -0.0018 34 1 4.2551 7.5687 0.8938 35 1 4.2543 7.5765 -0.8862 36 1 1.9161 8.4015 -0.8817 37 1 1.9167 8.3939 0.8983 38 1 3.6515 9.6236 -2.0327 39 1 5.7815 10.6747 -4.3747 40 1 1.3836 10.8842 -0.6964 41 1 1.9918 10.8319 2.2943 42 1 0.5229 11.5028 1.5452 43 1 0.8537 9.7567 1.4476 44 1 3.2492 12.5149 -0.7794 45 1 1.9223 13.1139 0.2442 46 1 3.3912 12.4430 0.9934 47 1 4.0394 0.3969 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734286846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:47 Heat of formation + Delta-G solvation = -77.119825 kcal Electronic energy + Delta-G solvation = -29130.573836 eV Core-core repulsion = 24842.692673 eV Total energy + Delta-G solvation = -4287.881163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.19400 -41.20110 -39.56674 -38.27245 -37.36804 -34.67633 -33.00363 -32.84235 -31.41463 -30.67973 -29.35547 -28.16182 -26.37897 -25.56999 -24.63780 -23.51581 -22.77604 -21.13900 -20.82666 -19.19251 -19.02383 -18.35399 -17.91769 -17.05924 -16.70858 -16.59072 -15.94190 -15.63878 -15.34453 -15.25488 -14.93912 -14.78921 -13.97510 -13.91319 -13.85559 -13.72492 -13.46768 -13.36018 -13.20390 -12.92718 -12.66426 -12.60847 -12.09074 -11.96932 -11.63860 -11.58257 -11.15236 -10.85889 -10.73710 -10.54714 -10.47612 -10.39115 -10.22431 -10.02454 -9.97855 -9.95028 -9.68319 -9.39840 -9.07168 -8.79302 -8.69683 -6.87831 -5.69569 -2.97036 0.19165 0.52567 2.36850 2.55679 3.12753 3.47887 3.49131 3.54437 3.54532 3.72095 3.79351 3.97475 4.35187 4.47072 4.52501 4.55182 4.65529 4.84672 4.92461 5.17792 5.28023 5.36856 5.42755 5.54286 5.60707 5.75282 5.75780 5.88842 5.97331 6.07326 6.21164 6.28310 6.32038 6.43908 6.45856 6.47865 6.59981 6.71179 6.75209 6.77736 6.87640 7.11939 7.17517 7.37658 7.69276 7.77754 8.32414 8.48761 9.60056 10.17027 10.51820 11.52909 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002424 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.352766 B =11546.359482 C =12889.851424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.128 3.872 4 C 0.008 3.992 5 N -0.392 5.392 6 C 0.013 3.987 7 C 0.565 3.435 8 O -0.519 6.519 9 N -0.705 5.705 10 C 0.121 3.879 11 C -0.135 4.135 12 C 0.186 3.814 13 H 0.049 0.951 14 N -0.721 5.721 15 C -0.231 4.231 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.901 3.099 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.287 1.287 23 C -0.111 4.111 24 C -0.147 4.147 25 C -0.140 4.140 26 C 0.156 3.844 27 F -0.095 7.095 28 C -0.161 4.161 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.173 0.827 33 H 0.405 0.595 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.028 0.972 46 H 0.040 0.960 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 -20.614 9.592 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.079 3.921 4 C -0.154 4.154 5 N -0.103 5.103 6 C -0.127 4.127 7 C 0.348 3.652 8 O -0.394 6.394 9 N -0.356 5.356 10 C -0.001 4.001 11 C -0.174 4.174 12 C 0.075 3.925 13 H 0.067 0.933 14 N -0.362 5.362 15 C -0.362 4.362 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.214 1.214 23 C -0.132 4.132 24 C -0.205 4.205 25 C -0.198 4.198 26 C 0.133 3.867 27 F -0.073 7.073 28 C -0.188 4.188 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.190 0.810 33 H 0.241 0.759 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.778 -19.801 9.607 25.966 hybrid contribution 0.615 -0.225 -0.394 0.764 sum -13.163 -20.026 9.213 25.674 Atomic orbital electron populations 1.23274 0.76931 1.05048 1.02220 1.86067 1.22479 1.25471 1.87362 1.20000 0.92055 0.86109 0.93904 1.23058 1.01085 0.86435 1.04849 1.67491 1.09378 1.26827 1.06615 1.21410 0.89313 0.94375 1.07610 1.17479 0.86476 0.83049 0.78151 1.90903 1.13094 1.86095 1.49335 1.45898 1.10497 1.05945 1.73276 1.21538 0.96227 0.78644 1.03728 1.22130 0.97563 0.95793 1.01920 1.20185 0.91756 0.89445 0.91131 0.93278 1.42441 1.36750 1.49658 1.07335 1.19145 1.06528 1.15147 0.95384 0.91096 1.24708 0.99826 1.00371 0.96051 1.69647 1.43213 1.44634 1.00552 0.86352 0.82731 0.81085 0.76551 1.21318 1.21855 1.21373 1.21771 0.97883 0.97582 0.96003 1.21938 0.99622 1.00427 0.98475 1.21830 0.99348 0.94873 1.03705 1.18256 0.78906 0.92730 0.96801 1.91670 1.27073 1.96395 1.92184 1.20835 0.92911 0.97779 1.07230 0.91768 0.91719 0.87365 0.81002 0.75944 0.91605 0.89461 0.91547 0.91456 0.78293 0.93581 0.92197 0.93294 0.93867 0.93169 0.89492 0.95259 0.94133 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.82 101.05 0.99 1.04 16 2 O -0.30 -1.98 10.50 -18.86 -0.20 -2.18 16 3 C 0.13 1.04 6.72 -38.86 -0.26 0.78 16 4 C 0.01 0.07 10.21 -17.36 -0.18 -0.11 16 5 N -0.39 -4.35 9.52 -9.63 -0.09 -4.44 16 6 C 0.01 0.17 6.75 -82.96 -0.56 -0.39 16 7 C 0.57 9.46 7.80 -12.37 -0.10 9.36 16 8 O -0.52 -10.72 15.30 5.31 0.08 -10.64 16 9 N -0.71 -10.61 5.54 -61.27 -0.34 -10.95 16 10 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 11 C -0.14 -2.10 4.65 -26.73 -0.12 -2.23 16 12 C 0.19 3.49 2.02 -67.93 -0.14 3.36 16 13 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 14 N -0.72 -17.17 4.45 -53.43 -0.24 -17.40 16 15 C -0.23 -6.17 7.57 -15.06 -0.11 -6.28 16 16 H 0.07 1.86 7.39 -52.48 -0.39 1.47 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 19 Si 0.90 22.60 29.55 -169.99 -5.02 17.58 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.11 -1.90 2.69 -90.62 -0.24 -2.15 16 24 C -0.15 -2.02 8.85 37.16 0.33 -1.69 16 25 C -0.14 -2.60 8.26 37.15 0.31 -2.29 16 26 C 0.16 1.97 7.31 -38.86 -0.28 1.69 16 27 F -0.10 -1.42 15.54 2.25 0.03 -1.38 16 28 C -0.16 -1.51 10.10 -39.12 -0.40 -1.90 16 29 H 0.06 0.10 7.67 -51.93 -0.40 -0.30 16 30 H 0.06 0.11 7.67 -51.93 -0.40 -0.29 16 31 H 0.11 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.17 0.78 6.31 -52.48 -0.33 0.44 16 33 H 0.41 5.08 7.79 -40.82 -0.32 4.76 16 34 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.09 1.84 7.75 -51.93 -0.40 1.44 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.88 6.17 -51.93 -0.32 0.56 16 38 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.62 6.32 -51.93 -0.33 0.29 16 44 H 0.09 1.92 6.01 -51.93 -0.31 1.61 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -33.22 389.07 -6.95 -40.17 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.88 Total: 9.98 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.88 Total: 0.76 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.06 Total: -60.15 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.12 Total: -12.82 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.03 Total: -1.38 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.22 -6.95 -40.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734286846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.951 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds