Wall clock time and date at job start Tue Mar 31 2020 23:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35719 * 117.00483 * 2 1 4 4 C 1.39356 * 120.35807 * 359.97438 * 3 2 1 5 5 N 1.31295 * 120.88455 * 179.74703 * 4 3 2 6 6 C 1.32890 * 121.71250 * 0.56408 * 5 4 3 7 7 C 1.47761 * 119.68427 * 179.70952 * 6 5 4 8 8 O 1.21563 * 119.99883 * 179.72992 * 7 6 5 9 9 N 1.34777 * 119.99834 * 359.72691 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72378 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47845 * 304.99688 * 12 11 10 14 14 N 1.46496 * 109.47261 * 65.00505 * 12 11 10 15 15 C 1.36939 * 120.00442 * 205.00190 * 14 12 11 16 16 H 1.08006 * 119.99454 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00698 * 179.97438 * 15 14 12 18 18 N 1.31625 * 119.99442 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00501 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47035 * 59.99782 * 19 17 15 21 21 H 1.48501 * 109.47385 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47244 * 300.00342 * 19 17 15 23 23 C 1.53004 * 109.47072 * 184.99738 * 12 11 10 24 24 C 1.53001 * 109.46847 * 60.00363 * 23 12 11 25 25 C 1.52992 * 109.47392 * 180.02562 * 23 12 11 26 26 C 1.39717 * 120.62672 * 359.43613 * 6 5 4 27 27 F 1.35100 * 120.46373 * 180.29544 * 26 6 5 28 28 C 1.38686 * 119.06933 * 0.27449 * 26 6 5 29 29 H 1.09000 * 109.47446 * 300.00281 * 1 2 3 30 30 H 1.09002 * 109.47179 * 60.00195 * 1 2 3 31 31 H 1.09000 * 109.47625 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.55735 * 0.04368 * 4 3 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 0.97008 * 120.00047 * 24.98902 * 14 12 11 39 39 H 0.97003 * 119.99361 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47409 * 300.00648 * 23 12 11 41 41 H 1.08993 * 109.47286 * 60.00006 * 24 23 12 42 42 H 1.09004 * 109.47425 * 180.02562 * 24 23 12 43 43 H 1.09005 * 109.47241 * 300.00239 * 24 23 12 44 44 H 1.09006 * 109.47329 * 60.00378 * 25 23 12 45 45 H 1.09004 * 109.47552 * 179.97438 * 25 23 12 46 46 H 1.08999 * 109.47825 * 300.00423 * 25 23 12 47 47 H 1.07999 * 120.78989 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2936 2.3827 -0.0005 5 7 1.8790 3.5580 0.0044 6 6 3.2023 3.6792 -0.0010 7 6 3.8139 5.0243 -0.0015 8 8 5.0238 5.1419 -0.0015 9 7 3.0302 6.1209 -0.0021 10 6 3.6366 7.4545 0.0035 11 6 2.5345 8.5158 0.0085 12 6 3.1678 9.9085 0.0150 13 1 3.8548 9.9915 0.8571 14 7 3.9010 10.1174 -1.2359 15 6 4.9390 11.0095 -1.2805 16 1 5.2167 11.5595 -0.3934 17 6 5.6342 11.2071 -2.4656 18 7 5.2960 10.5364 -3.5465 19 14 7.0495 12.4245 -2.5265 20 1 8.0987 12.0127 -1.5595 21 1 7.6222 12.4499 -3.8964 22 1 6.5535 13.7785 -2.1716 23 6 2.0707 10.9670 0.1457 24 6 1.3048 10.7490 1.4522 25 6 2.7038 12.3598 0.1516 26 6 4.0209 2.5469 -0.0004 27 9 5.3659 2.6741 0.0001 28 6 3.4333 1.2907 0.0001 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2151 2.3247 -0.0002 33 1 2.0647 6.0271 -0.0018 34 1 4.2551 7.5687 0.8938 35 1 4.2543 7.5765 -0.8862 36 1 1.9161 8.4015 -0.8817 37 1 1.9167 8.3939 0.8983 38 1 3.6515 9.6236 -2.0327 39 1 5.7815 10.6747 -4.3747 40 1 1.3836 10.8842 -0.6964 41 1 1.9918 10.8319 2.2943 42 1 0.5229 11.5028 1.5452 43 1 0.8537 9.7567 1.4476 44 1 3.2492 12.5149 -0.7794 45 1 1.9223 13.1139 0.2442 46 1 3.3912 12.4430 0.9934 47 1 4.0394 0.3969 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734286846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:46 Heat of formation + Delta-G solvation = -101.428694 kcal Electronic energy + Delta-G solvation = -29131.627948 eV Core-core repulsion = 24842.692673 eV Total energy + Delta-G solvation = -4288.935274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.19945 -41.96444 -40.67054 -39.15593 -38.80842 -36.08650 -34.88884 -33.62366 -32.74431 -31.90569 -30.92677 -28.53724 -27.69635 -27.00113 -25.74141 -24.78808 -24.06030 -22.51267 -22.06468 -20.66660 -19.71832 -19.37572 -19.02388 -18.79668 -17.46310 -17.39285 -16.97690 -16.87779 -16.63389 -16.30038 -16.22152 -15.71809 -15.65298 -15.28758 -15.11792 -15.01712 -14.56754 -14.49752 -14.34549 -14.13288 -13.89112 -13.49714 -13.19018 -12.92960 -12.89329 -12.82345 -12.65271 -12.51051 -12.48247 -12.18693 -12.02024 -11.91340 -11.72994 -11.49949 -11.31138 -11.16424 -10.89572 -10.76246 -10.74020 -10.21244 -9.69729 -8.88933 -7.86789 -5.11357 -0.67817 -0.22235 1.46382 1.49022 1.52704 1.53867 1.79652 2.01663 2.48633 2.60259 2.87080 2.96419 3.33206 3.46144 3.53567 3.72241 3.92060 3.95176 3.99834 4.17739 4.28718 4.39265 4.41388 4.45074 4.45103 4.54771 4.68129 4.69921 4.81756 4.82648 4.83921 4.98903 5.05229 5.11215 5.15967 5.25054 5.26916 5.37015 5.42155 5.47198 5.59466 5.73342 5.82710 5.96562 6.24591 6.35709 6.54713 7.10110 7.42095 8.19515 8.41216 9.36847 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002424 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.352766 B =11546.359482 C =12889.851424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.307 6.307 3 C 0.149 3.851 4 C 0.022 3.978 5 N -0.396 5.396 6 C -0.016 4.016 7 C 0.559 3.441 8 O -0.572 6.572 9 N -0.692 5.692 10 C 0.132 3.868 11 C -0.119 4.119 12 C 0.179 3.821 13 H 0.040 0.960 14 N -0.730 5.730 15 C -0.211 4.211 16 H 0.075 0.925 17 C -0.081 4.081 18 N -0.971 5.971 19 Si 0.958 3.042 20 H -0.285 1.285 21 H -0.301 1.301 22 H -0.277 1.277 23 C -0.105 4.105 24 C -0.139 4.139 25 C -0.138 4.138 26 C 0.136 3.864 27 F -0.119 7.119 28 C -0.160 4.160 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.216 0.784 33 H 0.420 0.580 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.371 0.629 39 H 0.246 0.754 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.050 0.950 46 H 0.041 0.959 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.095 -22.178 11.497 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.217 6.217 3 C 0.098 3.902 4 C -0.142 4.142 5 N -0.108 5.108 6 C -0.153 4.153 7 C 0.345 3.655 8 O -0.451 6.451 9 N -0.343 5.343 10 C 0.009 3.991 11 C -0.157 4.157 12 C 0.070 3.930 13 H 0.058 0.942 14 N -0.370 5.370 15 C -0.343 4.343 16 H 0.093 0.907 17 C -0.273 4.273 18 N -0.623 5.623 19 Si 0.788 3.212 20 H -0.211 1.211 21 H -0.228 1.228 22 H -0.203 1.203 23 C -0.126 4.126 24 C -0.196 4.196 25 C -0.195 4.195 26 C 0.113 3.887 27 F -0.097 7.097 28 C -0.186 4.186 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.146 0.854 32 H 0.232 0.768 33 H 0.258 0.742 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.203 0.797 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.450 -21.357 11.573 29.909 hybrid contribution 1.508 0.064 -0.895 1.755 sum -15.942 -21.292 10.678 28.662 Atomic orbital electron populations 1.23707 0.74442 1.07016 1.03739 1.86100 1.24944 1.24312 1.86341 1.20017 0.91576 0.86975 0.91588 1.23748 1.02839 0.85303 1.02338 1.67460 1.07890 1.28423 1.07020 1.20861 0.90568 0.92631 1.11247 1.18038 0.86020 0.84582 0.76863 1.90859 1.15383 1.87101 1.51786 1.45697 1.11096 1.04834 1.72673 1.21217 0.96482 0.80496 1.00951 1.22002 0.96885 0.92843 1.03977 1.20449 0.92031 0.92091 0.88423 0.94164 1.42622 1.36792 1.48871 1.08703 1.19451 1.06016 1.13877 0.94936 0.90725 1.25394 1.02769 1.02878 0.96237 1.69800 1.44755 1.46943 1.00824 0.85430 0.80206 0.79701 0.75849 1.21137 1.22756 1.20298 1.21628 0.97111 0.95720 0.98155 1.21855 0.99612 1.02250 0.95921 1.21764 0.99753 0.96616 1.01417 1.18508 0.78036 0.93892 0.98263 1.91604 1.28788 1.96613 1.92668 1.20990 0.94012 0.96973 1.06604 0.90051 0.90283 0.85437 0.76811 0.74168 0.92679 0.94133 0.91014 0.87566 0.79728 0.94558 0.92767 0.92883 0.92306 0.91060 0.93613 0.93063 0.94033 0.80095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.81 10.50 -90.40 -0.95 -3.76 16 3 C 0.15 1.95 6.72 22.73 0.15 2.11 16 4 C 0.02 0.28 10.21 85.04 0.87 1.14 16 5 N -0.40 -8.07 9.52 -184.38 -1.76 -9.82 16 6 C -0.02 -0.44 6.75 41.86 0.28 -0.16 16 7 C 0.56 19.61 7.80 86.76 0.68 20.29 16 8 O -0.57 -25.44 15.30 -3.91 -0.06 -25.50 16 9 N -0.69 -21.10 5.54 -466.04 -2.58 -23.69 16 10 C 0.13 4.69 5.56 86.38 0.48 5.17 16 11 C -0.12 -3.55 4.65 30.59 0.14 -3.41 16 12 C 0.18 6.66 2.02 44.99 0.09 6.75 16 13 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 14 N -0.73 -35.80 4.45 -322.95 -1.44 -37.24 16 15 C -0.21 -11.55 7.57 84.03 0.64 -10.92 16 16 H 0.07 3.97 7.39 -2.91 -0.02 3.95 16 17 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 18 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 19 Si 0.96 47.92 29.55 68.60 2.03 49.95 16 20 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 21 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 C -0.11 -3.42 2.69 -10.79 -0.03 -3.45 16 24 C -0.14 -3.29 8.85 71.98 0.64 -2.65 16 25 C -0.14 -4.97 8.26 71.98 0.59 -4.38 16 26 C 0.14 3.52 7.31 22.73 0.17 3.68 16 27 F -0.12 -3.78 15.54 44.97 0.70 -3.08 16 28 C -0.16 -2.78 10.10 22.57 0.23 -2.55 16 29 H 0.08 -0.17 7.67 -2.39 -0.02 -0.19 16 30 H 0.08 -0.12 7.67 -2.39 -0.02 -0.14 16 31 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.22 0.76 6.31 -2.91 -0.02 0.74 16 33 H 0.42 10.05 7.79 -92.71 -0.72 9.33 16 34 H 0.05 2.05 8.14 -2.38 -0.02 2.04 16 35 H 0.04 1.83 7.75 -2.39 -0.02 1.81 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.40 6.17 -2.38 -0.01 2.38 16 38 H 0.37 19.92 7.80 -92.70 -0.72 19.20 16 39 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.40 6.32 -2.38 -0.02 1.39 16 44 H 0.04 2.02 6.01 -2.38 -0.01 2.00 16 45 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -78.34 389.07 2.30 -76.05 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.43 Total: 29.40 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.51 Total: 8.46 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -5.49 Total: -131.51 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.01 Total: -29.27 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.70 Total: -3.08 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -78.34 2.30 -76.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734286846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -78.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds