Wall clock time and date at job start Tue Mar 31 2020 22:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86806 * 119.99812 * 2 1 4 4 H 1.48501 * 109.46944 * 269.99565 * 3 2 1 5 5 H 1.48497 * 109.47136 * 29.99256 * 3 2 1 6 6 H 1.48502 * 109.47361 * 149.99868 * 3 2 1 7 7 C 1.38944 * 120.00537 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00575 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00104 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99943 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00156 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47050 * 180.02562 * 12 10 9 14 14 C 1.48560 * 111.00228 * 305.41734 * 13 12 10 15 15 C 1.54381 * 104.59649 * 200.96264 * 14 13 12 16 16 H 1.08991 * 118.15757 * 244.14497 * 15 14 13 17 17 C 1.54263 * 105.06117 * 23.85327 * 15 14 13 18 18 H 1.09000 * 121.78726 * 222.13566 * 17 15 14 19 19 C 1.48562 * 110.99954 * 189.99656 * 13 12 10 20 20 C 1.52995 * 59.73045 * 114.09303 * 17 15 14 21 21 H 1.09000 * 117.44432 * 252.35720 * 20 17 15 22 22 N 1.46493 * 117.40856 * 107.66108 * 20 17 15 23 23 C 1.34775 * 120.00277 * 135.78756 * 22 20 17 24 24 O 1.21279 * 119.99777 * 359.97438 * 23 22 20 25 25 C 1.50700 * 120.00125 * 179.97438 * 23 22 20 26 26 H 1.09002 * 110.43815 * 300.70101 * 25 23 22 27 27 C 1.54270 * 110.48625 * 178.15484 * 25 23 22 28 28 C 1.53873 * 106.60213 * 217.71208 * 27 25 23 29 29 C 1.54269 * 106.59790 * 0.02562 * 28 27 25 30 30 H 1.09001 * 110.48625 * 264.79972 * 29 28 27 31 31 F 1.39893 * 110.48602 * 142.28564 * 29 28 27 32 32 C 1.54894 * 110.48660 * 63.24364 * 25 23 22 33 33 H 0.96999 * 120.00341 * 0.02562 * 1 2 3 34 34 H 0.97001 * 119.99769 * 0.02562 * 9 7 2 35 35 H 1.08998 * 109.47284 * 59.99823 * 12 10 9 36 36 H 1.09008 * 109.46659 * 299.99720 * 12 10 9 37 37 H 1.08996 * 110.41077 * 82.18177 * 14 13 12 38 38 H 1.09000 * 110.40603 * 319.73861 * 14 13 12 39 39 H 1.09009 * 110.40983 * 40.26306 * 19 13 12 40 40 H 1.08997 * 110.41401 * 277.82368 * 19 13 12 41 41 H 0.97010 * 119.99984 * 315.78347 * 22 20 17 42 42 H 1.08999 * 110.03091 * 337.00126 * 27 25 23 43 43 H 1.09003 * 110.03058 * 98.42653 * 27 25 23 44 44 H 1.09000 * 110.02820 * 119.28228 * 28 27 25 45 45 H 1.08998 * 110.03179 * 240.66714 * 28 27 25 46 46 H 1.08997 * 110.75472 * 274.93639 * 32 25 23 47 47 H 1.09002 * 110.75233 * 38.30216 * 32 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4404 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5577 0.0030 12 6 1.2439 -4.8629 0.0010 13 7 2.1985 -5.9793 0.0030 14 6 3.1572 -5.8622 -1.1259 15 6 3.7032 -7.2927 -1.3226 16 1 4.7641 -7.4674 -1.1441 17 6 2.6175 -8.2201 -0.7388 18 1 2.8702 -9.0850 -0.1255 19 6 1.5068 -7.2718 -0.2383 20 6 2.9262 -8.2420 -2.2371 21 1 2.1890 -7.8015 -2.9084 22 7 3.6397 -9.4090 -2.7616 23 6 3.2362 -9.9848 -3.9114 24 8 2.2822 -9.5371 -4.5117 25 6 3.9706 -11.1850 -4.4513 26 1 5.0168 -10.9403 -4.6346 27 6 3.2998 -11.6915 -5.7449 28 6 3.3752 -13.2279 -5.7067 29 6 4.0886 -13.6015 -4.3909 30 1 5.1543 -13.7515 -4.5640 31 9 3.5178 -14.7507 -3.8337 32 6 3.8568 -12.3772 -3.4690 33 1 -0.4850 0.8400 -0.0004 34 1 0.3534 -2.3906 -0.0002 35 1 0.6183 -4.9209 -0.8897 36 1 0.6162 -4.9204 0.8904 37 1 3.9661 -5.1786 -0.8682 38 1 2.6445 -5.5238 -2.0263 39 1 0.7358 -7.1539 -0.9999 40 1 1.0730 -7.6495 0.6876 41 1 4.4026 -9.7673 -2.2813 42 1 2.2590 -11.3694 -5.7766 43 1 3.8349 -11.3129 -6.6158 44 1 2.3709 -13.6514 -5.7198 45 1 3.9461 -13.5950 -6.5595 46 1 4.6268 -12.3186 -2.6997 47 1 2.8638 -12.4151 -3.0210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752845645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:09 Heat of formation + Delta-G solvation = -112.685354 kcal Electronic energy + Delta-G solvation = -28656.117896 eV Core-core repulsion = 24366.694496 eV Total energy + Delta-G solvation = -4289.423400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.56312 -41.63576 -40.78248 -39.70871 -37.78676 -36.42105 -35.77611 -33.77757 -33.25619 -30.29352 -29.39428 -29.31732 -28.89369 -26.57227 -24.31364 -22.88450 -22.06531 -21.73321 -21.39563 -20.94308 -20.69123 -19.85506 -18.60335 -18.02575 -17.63833 -17.30635 -16.78510 -16.63386 -16.43248 -16.31817 -16.13906 -15.59177 -15.35878 -15.30068 -15.00465 -14.87309 -14.60711 -14.31210 -14.16074 -13.85532 -13.54064 -13.33578 -13.20412 -13.01992 -12.94043 -12.61227 -12.53318 -12.44121 -12.40416 -12.22080 -12.11882 -11.98059 -11.93381 -11.60838 -11.49510 -11.44957 -11.10458 -10.88783 -10.24153 -10.03500 -9.82527 -9.42429 -8.48150 -5.97094 1.36777 1.40805 1.44530 1.53743 1.85807 2.01163 2.27236 2.61986 2.84324 3.18497 3.20254 3.31189 3.38416 3.53267 3.61252 3.68600 3.82665 3.91924 3.97040 4.09527 4.18517 4.24906 4.26693 4.33598 4.38879 4.40806 4.42917 4.50299 4.53580 4.63050 4.71337 4.77917 4.82616 4.96278 5.06936 5.10539 5.10908 5.21719 5.25923 5.31674 5.39795 5.43593 5.78289 5.85213 6.05201 6.45325 6.57996 7.10595 7.15991 7.52814 8.08099 8.69256 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.001712 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.913824 B =16347.131138 C =16632.439363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.081 0.919 9 N -0.572 5.572 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.044 3.956 13 N -0.501 5.501 14 C 0.066 3.934 15 C -0.163 4.163 16 H 0.137 0.863 17 C -0.153 4.153 18 H 0.146 0.854 19 C 0.056 3.944 20 C 0.109 3.891 21 H 0.106 0.894 22 N -0.682 5.682 23 C 0.521 3.479 24 O -0.582 6.582 25 C -0.102 4.102 26 H 0.142 0.858 27 C -0.112 4.112 28 C -0.148 4.148 29 C 0.082 3.918 30 H 0.124 0.876 31 F -0.228 7.228 32 C -0.135 4.135 33 H 0.278 0.722 34 H 0.396 0.604 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.421 0.579 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.741 -28.086 -7.829 30.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.099 0.901 9 N -0.209 5.209 10 C 0.226 3.774 11 O -0.500 6.500 12 C -0.087 4.087 13 N -0.225 5.225 14 C -0.062 4.062 15 C -0.183 4.183 16 H 0.155 0.845 17 C -0.173 4.173 18 H 0.164 0.836 19 C -0.071 4.071 20 C 0.002 3.998 21 H 0.124 0.876 22 N -0.332 5.332 23 C 0.309 3.691 24 O -0.461 6.461 25 C -0.123 4.123 26 H 0.159 0.841 27 C -0.150 4.150 28 C -0.185 4.185 29 C 0.046 3.954 30 H 0.142 0.858 31 F -0.209 7.209 32 C -0.173 4.173 33 H 0.087 0.913 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.259 0.741 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.133 0.867 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.967 -27.621 -7.715 29.765 hybrid contribution -0.714 1.167 -0.477 1.449 sum 7.254 -26.454 -8.192 28.628 Atomic orbital electron populations 1.69674 1.06881 1.29331 1.50235 1.26066 0.96555 1.02494 0.96237 0.84909 0.77911 0.76794 0.78606 1.19710 1.19526 1.19657 1.19677 0.92750 0.83883 1.49936 0.90116 1.41922 1.09319 1.04710 1.64938 1.20652 0.88307 0.85909 0.82484 1.90437 1.15429 1.87607 1.56479 1.21993 0.94402 0.88812 1.03516 1.65415 1.13689 1.01032 1.42388 1.22625 0.97090 0.95575 0.90932 1.23884 0.98847 0.90980 1.04565 0.84542 1.23983 0.97366 1.00729 0.95252 0.83641 1.22798 0.94748 0.88168 1.01393 1.21521 0.97992 0.89052 0.91285 0.87602 1.45163 1.33891 1.29612 1.24535 1.21122 0.83589 0.84663 0.79694 1.90710 1.30236 1.65435 1.59720 1.22125 1.02342 0.91315 0.96513 0.84057 1.22019 1.01764 0.94525 0.96710 1.22743 1.01958 0.95713 0.98125 1.22706 0.99349 0.80740 0.92566 0.85787 1.92790 1.87472 1.53419 1.87203 1.23104 1.04347 0.91957 0.97915 0.91288 0.77050 0.91702 0.86800 0.89647 0.96006 0.93526 0.87471 0.74111 0.92192 0.89628 0.91484 0.88431 0.86744 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.12 13.05 21.66 0.28 -49.83 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -29.74 5.29 -306.98 -1.62 -31.36 16 10 C 0.44 21.15 7.50 87.66 0.66 21.81 16 11 O -0.61 -33.50 13.24 -3.09 -0.04 -33.54 16 12 C 0.04 1.59 5.55 85.56 0.47 2.06 16 13 N -0.50 -16.54 5.33 -886.03 -4.73 -21.27 16 14 C 0.07 2.23 5.11 86.45 0.44 2.68 16 15 C -0.16 -3.86 7.05 -9.89 -0.07 -3.93 16 16 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 17 C -0.15 -3.09 7.05 -9.90 -0.07 -3.16 16 18 H 0.15 2.17 8.14 -2.39 -0.02 2.16 16 19 C 0.06 1.37 6.30 86.45 0.54 1.91 16 20 C 0.11 2.35 5.98 44.99 0.27 2.62 16 21 H 0.11 2.95 7.40 -2.39 -0.02 2.93 16 22 N -0.68 -10.32 5.53 -442.55 -2.45 -12.76 16 23 C 0.52 9.55 7.14 87.66 0.63 10.17 16 24 O -0.58 -16.74 15.00 -3.03 -0.05 -16.78 16 25 C -0.10 -0.98 3.25 -10.46 -0.03 -1.01 16 26 H 0.14 0.49 8.14 -2.39 -0.02 0.48 16 27 C -0.11 -1.34 6.17 31.32 0.19 -1.15 16 28 C -0.15 -1.34 6.61 31.32 0.21 -1.13 16 29 C 0.08 0.66 4.65 31.71 0.15 0.81 16 30 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 31 F -0.23 -3.39 17.17 44.97 0.77 -2.62 16 32 C -0.14 -1.02 6.10 31.93 0.19 -0.82 16 33 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 35 H 0.07 2.15 7.88 -2.39 -0.02 2.13 16 36 H 0.11 3.61 8.14 -2.38 -0.02 3.59 16 37 H 0.09 3.56 6.05 -2.39 -0.01 3.54 16 38 H 0.02 0.79 8.00 -2.39 -0.02 0.78 16 39 H 0.05 1.14 7.82 -2.38 -0.02 1.12 16 40 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.42 3.27 8.83 -92.70 -0.82 2.45 16 42 H 0.06 1.11 6.87 -2.39 -0.02 1.10 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.80 8.11 -2.39 -0.02 0.78 16 45 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.07 0.81 8.05 -2.39 -0.02 0.79 16 Total: -1.00 -75.67 384.76 -1.48 -77.14 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.54 Total: 33.46 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 4.86 Total: 12.36 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -8.51 Total: -115.23 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.09 Total: -50.32 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.77 Total: -2.62 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.67 -1.48 -77.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752845645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.541 kcal (2) G-P(sol) polarization free energy of solvation -75.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds