Wall clock time and date at job start Tue Mar 31 2020 22:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.48562 * 110.99567 * 169.99894 * 13 12 10 15 15 C 1.54382 * 104.59422 * 200.96210 * 14 13 12 16 16 H 1.09003 * 117.60482 * 244.72381 * 15 14 13 17 17 C 1.54259 * 105.06028 * 23.85099 * 15 14 13 18 18 H 1.09004 * 121.78841 * 223.01037 * 17 15 14 19 19 C 1.48561 * 111.00109 * 54.58315 * 13 12 10 20 20 C 1.53003 * 59.72912 * 114.09888 * 17 15 14 21 21 H 1.09002 * 117.43957 * 252.36225 * 20 17 15 22 22 N 1.46494 * 117.44612 * 107.64522 * 20 17 15 23 23 C 1.34777 * 119.99743 * 135.77497 * 22 20 17 24 24 O 1.21276 * 120.00183 * 359.97438 * 23 22 20 25 25 C 1.50703 * 119.99636 * 180.02562 * 23 22 20 26 26 H 1.08992 * 110.02034 * 58.60607 * 25 23 22 27 27 C 1.54270 * 110.02932 * 297.16218 * 25 23 22 28 28 C 1.54888 * 104.19335 * 217.10786 * 27 25 23 29 29 C 1.54883 * 102.75038 * 37.94756 * 28 27 25 30 30 H 1.09003 * 110.49023 * 80.73130 * 29 28 27 31 31 F 1.39908 * 110.48846 * 203.37740 * 29 28 27 32 32 C 1.53881 * 110.02746 * 180.02562 * 25 23 22 33 33 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 34 34 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 35 35 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 36 36 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 37 37 H 1.08997 * 110.41642 * 319.73790 * 14 13 12 38 38 H 1.08995 * 110.41441 * 82.18434 * 14 13 12 39 39 H 1.09004 * 110.40874 * 277.81896 * 19 13 12 40 40 H 1.09000 * 110.41237 * 40.25330 * 19 13 12 41 41 H 0.97001 * 119.99718 * 315.78024 * 22 20 17 42 42 H 1.08998 * 110.48964 * 335.78995 * 27 25 23 43 43 H 1.09003 * 110.48181 * 98.43476 * 27 25 23 44 44 H 1.09000 * 110.75925 * 279.62549 * 28 27 25 45 45 H 1.09004 * 110.91351 * 156.33493 * 28 27 25 46 46 H 1.09002 * 110.02743 * 238.56405 * 32 25 23 47 47 H 1.08996 * 110.03367 * 359.94515 * 32 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.5064 -7.2717 0.2387 15 6 2.6163 -8.2200 0.7409 16 1 2.8694 -9.0768 0.1164 17 6 3.7012 -7.2927 1.3263 18 1 4.7618 -7.4593 1.1377 19 6 3.1555 -5.8622 1.1287 20 6 2.9229 -8.2419 2.2397 21 1 2.1847 -7.8014 2.9099 22 7 3.6359 -9.4084 2.7661 23 6 3.5045 -9.7496 4.0633 24 8 2.7965 -9.0906 4.7950 25 6 4.2384 -10.9492 4.6049 26 1 5.3117 -10.8270 4.4595 27 6 3.7508 -12.2306 3.8977 28 6 3.7497 -13.3038 5.0144 29 6 3.2595 -12.5102 6.2508 30 1 2.1738 -12.4140 6.2365 31 9 3.6817 -13.1320 7.4309 32 6 3.9255 -11.1273 6.1010 33 1 -0.4850 0.8401 -0.0004 34 1 0.3535 -2.3906 0.0002 35 1 0.6170 -4.9209 0.8886 36 1 0.6176 -4.9205 -0.8913 37 1 0.7344 -7.1539 0.9990 38 1 1.0742 -7.6495 -0.6878 39 1 3.9649 -5.1786 0.8723 40 1 2.6416 -5.5237 2.0284 41 1 4.2025 -9.9352 2.1810 42 1 2.7445 -12.0893 3.5033 43 1 4.4384 -12.5111 3.0997 44 1 4.7550 -13.6920 5.1782 45 1 3.0592 -14.1128 4.7760 46 1 4.8471 -11.0922 6.6819 47 1 3.2436 -10.3455 6.4355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752845646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:12 Heat of formation + Delta-G solvation = -87.642524 kcal Electronic energy + Delta-G solvation = -28679.199334 eV Core-core repulsion = 24390.861873 eV Total energy + Delta-G solvation = -4288.337461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.96392 -40.73921 -39.73763 -38.04833 -37.12460 -35.19159 -33.92594 -32.66579 -31.25334 -29.67003 -28.87928 -28.24103 -27.44486 -24.75929 -23.25400 -21.90546 -21.45102 -21.05255 -20.28005 -19.93824 -19.16050 -17.99080 -17.83963 -17.14657 -16.71173 -16.35158 -15.85417 -15.36209 -15.17256 -15.00800 -14.80695 -14.55340 -14.47516 -13.99623 -13.81230 -13.62580 -13.51659 -13.46072 -12.95346 -12.48865 -12.48018 -12.27587 -12.06376 -11.88559 -11.85163 -11.55783 -11.42117 -11.32550 -11.23931 -11.12172 -10.99672 -10.97165 -10.85052 -10.44672 -10.23564 -10.15268 -10.03205 -9.50049 -8.98868 -8.42656 -8.05329 -7.94357 -6.43110 -3.84150 2.21153 2.62299 3.19278 3.25342 3.29512 3.57028 3.76839 3.82032 3.87143 4.01509 4.06227 4.22511 4.31301 4.56078 4.57250 4.63102 4.63360 4.78170 4.79868 4.81273 4.93841 4.99425 5.12326 5.16636 5.23961 5.27479 5.29793 5.35411 5.53384 5.56229 5.66351 5.70814 5.75341 5.76414 5.76951 5.91670 6.01445 6.10842 6.24124 6.29670 6.61432 7.10875 7.12344 7.22490 7.53770 7.86012 8.03877 8.59444 9.15983 9.51673 10.03072 10.74391 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.001754 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.376839 B =15958.501752 C =16485.773752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.560 5.560 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.034 3.966 13 N -0.487 5.487 14 C 0.059 3.941 15 C -0.170 4.170 16 H 0.118 0.882 17 C -0.165 4.165 18 H 0.117 0.883 19 C 0.065 3.935 20 C 0.105 3.895 21 H 0.133 0.867 22 N -0.697 5.697 23 C 0.522 3.478 24 O -0.531 6.531 25 C -0.110 4.110 26 H 0.107 0.893 27 C -0.114 4.114 28 C -0.147 4.147 29 C 0.084 3.916 30 H 0.093 0.907 31 F -0.211 7.211 32 C -0.145 4.145 33 H 0.272 0.728 34 H 0.393 0.607 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.040 0.960 41 H 0.402 0.598 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -26.920 6.465 28.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.098 4.098 13 N -0.211 5.211 14 C -0.069 4.069 15 C -0.190 4.190 16 H 0.136 0.864 17 C -0.185 4.185 18 H 0.135 0.865 19 C -0.062 4.062 20 C -0.002 4.002 21 H 0.151 0.849 22 N -0.345 5.345 23 C 0.308 3.692 24 O -0.407 6.407 25 C -0.132 4.132 26 H 0.125 0.875 27 C -0.152 4.152 28 C -0.185 4.185 29 C 0.048 3.952 30 H 0.111 0.889 31 F -0.192 7.192 32 C -0.183 4.183 33 H 0.082 0.918 34 H 0.226 0.774 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.058 0.942 41 H 0.237 0.763 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.064 -26.239 6.508 27.504 hybrid contribution -0.351 0.590 0.360 0.775 sum 4.713 -25.649 6.869 26.968 Atomic orbital electron populations 1.69606 1.05944 1.28322 1.50314 1.25272 0.95645 0.99763 0.97221 0.85907 0.78761 0.80413 0.79075 1.19875 1.20965 1.19898 1.19653 0.93350 0.82179 1.47799 0.87912 1.41838 1.09219 1.04557 1.64034 1.19678 0.88343 0.84627 0.84651 1.90445 1.13703 1.86772 1.55724 1.22101 0.94614 0.91268 1.01821 1.65419 1.13429 1.00055 1.42195 1.22689 0.94266 0.89776 1.00134 1.23834 0.99485 1.01071 0.94592 0.86439 1.24132 0.97762 0.93320 1.03321 0.86461 1.22868 0.98156 0.93575 0.91634 1.21842 0.98265 0.88643 0.91411 0.84914 1.45267 1.49142 1.29638 1.10501 1.20514 0.81522 0.85569 0.81546 1.90709 1.39371 1.53431 1.57211 1.21865 1.01530 0.93410 0.96379 0.87521 1.22309 1.02621 0.92470 0.97803 1.23082 1.03158 0.98144 0.94112 1.22471 0.99862 0.92015 0.80883 0.88948 1.92813 1.92001 1.84202 1.50172 1.22750 1.03228 0.97724 0.94626 0.91778 0.77418 0.93179 0.88967 0.93657 0.89486 0.85997 0.94216 0.76316 0.90379 0.89831 0.89756 0.89973 0.89722 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 10 C 0.44 10.34 7.50 -10.98 -0.08 10.26 16 11 O -0.58 -15.31 13.24 5.55 0.07 -15.23 16 12 C 0.03 0.60 5.55 -4.97 -0.03 0.57 16 13 N -0.49 -8.09 5.34 -231.41 -1.23 -9.32 16 14 C 0.06 0.75 6.30 -2.18 -0.01 0.73 16 15 C -0.17 -1.82 7.05 -89.23 -0.63 -2.45 16 16 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.16 -2.08 7.05 -89.24 -0.63 -2.71 16 18 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 19 C 0.06 1.09 5.11 -2.18 -0.01 1.08 16 20 C 0.10 1.17 5.98 -67.93 -0.41 0.76 16 21 H 0.13 1.78 7.40 -51.93 -0.38 1.40 16 22 N -0.70 -5.84 5.51 -53.80 -0.30 -6.14 16 23 C 0.52 5.05 6.99 -10.98 -0.08 4.97 16 24 O -0.53 -7.48 14.77 5.56 0.08 -7.40 16 25 C -0.11 -0.68 3.30 -90.65 -0.30 -0.98 16 26 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 27 C -0.11 -0.48 6.31 -25.07 -0.16 -0.64 16 28 C -0.15 -0.69 6.70 -24.74 -0.17 -0.86 16 29 C 0.08 0.58 4.66 -25.10 -0.12 0.46 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 F -0.21 -1.94 17.17 2.25 0.04 -1.90 16 32 C -0.15 -1.09 6.20 -25.64 -0.16 -1.25 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 35 H 0.05 0.83 7.88 -51.93 -0.41 0.42 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.05 0.56 7.82 -51.93 -0.41 0.15 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.12 2.45 6.05 -51.93 -0.31 2.13 16 40 H 0.04 0.70 8.00 -51.93 -0.42 0.28 16 41 H 0.40 2.16 8.83 -40.82 -0.36 1.80 16 42 H 0.08 0.37 7.85 -51.93 -0.41 -0.03 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 47 H 0.10 1.00 6.39 -51.93 -0.33 0.67 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -33.04 384.07 -10.01 -43.05 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.09 Total: 11.12 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.02 Total: 1.99 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.86 Total: -53.43 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.16 Total: -22.63 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.04 -10.01 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752845646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.596 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds