Wall clock time and date at job start Tue Mar 31 2020 23:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35726 * 116.99894 * 2 1 4 4 C 1.39360 * 120.36249 * 359.97438 * 3 2 1 5 5 N 1.31288 * 120.87858 * 179.74324 * 4 3 2 6 6 C 1.32888 * 121.72262 * 0.56956 * 5 4 3 7 7 C 1.47762 * 119.69094 * 179.70610 * 6 5 4 8 8 O 1.21562 * 119.99908 * 179.73264 * 7 6 5 9 9 N 1.34773 * 119.99647 * 359.72796 * 7 6 5 10 10 C 1.46495 * 119.99685 * 185.13867 * 9 7 6 11 11 H 1.08997 * 109.47636 * 321.71305 * 10 9 7 12 12 C 1.53005 * 109.47460 * 201.70989 * 10 9 7 13 13 N 1.46499 * 109.46959 * 54.99719 * 12 10 9 14 14 C 1.36934 * 119.99965 * 179.72736 * 13 12 10 15 15 H 1.08001 * 120.00027 * 0.27724 * 14 13 12 16 16 C 1.38813 * 120.00134 * 180.27992 * 14 13 12 17 17 N 1.31628 * 119.99884 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00168 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46888 * 59.99892 * 18 16 14 20 20 H 1.48500 * 109.46891 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46870 * 299.99564 * 18 16 14 22 22 C 1.53001 * 109.47219 * 81.70961 * 10 9 7 23 23 C 1.52997 * 109.47602 * 184.08164 * 22 10 9 24 24 C 1.52999 * 109.46946 * 66.19030 * 23 22 10 25 25 C 1.53002 * 109.47571 * 186.18879 * 23 22 10 26 26 C 1.39718 * 120.62309 * 359.43637 * 6 5 4 27 27 F 1.35104 * 120.46607 * 180.29766 * 26 6 5 28 28 C 1.38693 * 119.06631 * 0.27032 * 26 6 5 29 29 H 1.08989 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46951 * 300.00651 * 1 2 3 31 31 H 1.09006 * 109.46648 * 59.99947 * 1 2 3 32 32 H 1.07998 * 119.55927 * 0.02562 * 4 3 2 33 33 H 0.97000 * 120.00068 * 5.14282 * 9 7 6 34 34 H 1.09007 * 109.46885 * 295.00600 * 12 10 9 35 35 H 1.08998 * 109.47462 * 175.00402 * 12 10 9 36 36 H 0.96999 * 119.99904 * 0.02562 * 13 12 10 37 37 H 0.96992 * 119.99874 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47166 * 304.08509 * 22 10 9 39 39 H 1.09001 * 109.47059 * 64.08383 * 22 10 9 40 40 H 1.09002 * 109.47367 * 306.19608 * 23 22 10 41 41 H 1.09003 * 109.47354 * 303.80651 * 24 23 22 42 42 H 1.09004 * 109.47519 * 63.80823 * 24 23 22 43 43 H 1.09006 * 109.47184 * 183.80763 * 24 23 22 44 44 H 1.09003 * 109.46725 * 59.99882 * 25 23 22 45 45 H 1.08991 * 109.47009 * 179.97438 * 25 23 22 46 46 H 1.08994 * 109.47058 * 300.00787 * 25 23 22 47 47 H 1.07997 * 120.78575 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3829 -0.0005 5 7 1.8790 3.5580 0.0045 6 6 3.2023 3.6794 -0.0009 7 6 3.8139 5.0245 -0.0015 8 8 5.0238 5.1421 -0.0015 9 7 3.0302 6.1210 -0.0020 10 6 3.6324 7.4516 -0.1162 11 1 4.5610 7.4803 0.4537 12 6 2.6631 8.4992 0.4352 13 7 2.2876 8.1435 1.8059 14 6 1.4271 8.9433 2.5095 15 1 1.0217 9.8338 2.0524 16 6 1.0759 8.6094 3.8103 17 7 1.5696 7.5238 4.3673 18 14 -0.0985 9.7000 4.7699 19 1 -1.3982 9.7765 4.0557 20 1 -0.3100 9.1285 6.1241 21 1 0.4798 11.0623 4.8929 22 6 3.9271 7.7535 -1.5868 23 6 4.6481 9.0985 -1.6969 24 6 6.0294 8.9912 -1.0478 25 6 4.8054 9.4737 -3.1718 26 6 4.0209 2.5471 -0.0005 27 9 5.3659 2.6742 0.0000 28 6 3.4332 1.2908 0.0000 29 1 -0.3633 -1.0275 -0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2151 2.3249 -0.0005 33 1 2.0675 6.0291 0.0733 34 1 1.7701 8.5321 -0.1891 35 1 3.1447 9.4770 0.4324 36 1 2.6520 7.3438 2.2166 37 1 1.3245 7.2907 5.2763 38 1 4.5595 6.9675 -1.9995 39 1 2.9910 7.7965 -2.1436 40 1 4.0656 9.8658 -1.1869 41 1 5.9210 8.6584 -0.0155 42 1 6.6354 8.2725 -1.5995 43 1 6.5160 9.9665 -1.0658 44 1 3.8213 9.5501 -3.6342 45 1 5.3186 10.4320 -3.2501 46 1 5.3878 8.7064 -3.6817 47 1 4.0394 0.3970 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753737169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:04 Heat of formation + Delta-G solvation = -78.960714 kcal Electronic energy + Delta-G solvation = -29946.030293 eV Core-core repulsion = 25658.069304 eV Total energy + Delta-G solvation = -4287.960990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.03467 -40.99755 -39.58702 -38.25035 -37.03746 -34.78844 -33.51309 -32.58656 -31.25350 -30.55470 -28.93494 -27.92040 -26.97255 -25.52939 -24.86289 -23.49328 -22.66711 -21.58242 -20.45508 -19.33295 -18.83999 -18.23320 -17.81034 -16.95418 -16.50887 -16.39852 -15.84553 -15.72466 -15.37073 -15.08832 -14.90894 -14.46074 -14.40581 -13.81926 -13.59675 -13.53858 -13.45693 -13.21391 -13.14727 -12.87554 -12.71940 -12.42802 -12.21461 -12.11594 -11.93326 -11.84259 -11.58717 -11.06293 -10.83921 -10.73422 -10.72074 -10.44228 -10.22916 -10.19075 -9.97789 -9.78712 -9.70148 -9.58445 -8.88541 -8.84666 -8.51800 -6.91752 -5.74096 -3.03835 0.39964 0.74681 2.55933 2.75141 3.31088 3.44806 3.49134 3.50201 3.68041 3.91448 4.03135 4.18300 4.53832 4.60001 4.65077 4.71254 4.74895 5.02162 5.06981 5.08882 5.11083 5.16051 5.37976 5.47743 5.56603 5.59681 5.61941 5.79064 5.82804 5.89267 5.97387 6.06541 6.08675 6.17431 6.23504 6.26726 6.40301 6.49771 6.56702 6.64686 6.66849 6.77815 6.99244 7.37733 7.70504 7.93604 8.43341 8.51571 9.55057 10.11700 10.47032 11.48139 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007176 B = 0.004001 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.834436 B = 6996.194457 C = 9861.440627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.127 3.873 4 C 0.011 3.989 5 N -0.384 5.384 6 C 0.015 3.985 7 C 0.572 3.428 8 O -0.531 6.531 9 N -0.689 5.689 10 C 0.134 3.866 11 H 0.091 0.909 12 C 0.145 3.855 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.120 4.120 23 C -0.097 4.097 24 C -0.148 4.148 25 C -0.144 4.144 26 C 0.153 3.847 27 F -0.098 7.098 28 C -0.162 4.162 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.173 0.827 33 H 0.414 0.586 34 H 0.024 0.976 35 H 0.037 0.963 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -12.763 -14.462 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.215 6.215 3 C 0.078 3.922 4 C -0.151 4.151 5 N -0.095 5.095 6 C -0.125 4.125 7 C 0.356 3.644 8 O -0.407 6.407 9 N -0.339 5.339 10 C 0.030 3.970 11 H 0.109 0.891 12 C 0.017 3.983 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.159 4.159 23 C -0.116 4.116 24 C -0.206 4.206 25 C -0.201 4.201 26 C 0.130 3.870 27 F -0.076 7.076 28 C -0.189 4.189 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.190 0.810 33 H 0.251 0.749 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.834 -11.949 -14.409 18.738 hybrid contribution -0.634 -0.495 0.881 1.193 sum 0.200 -12.444 -13.528 18.383 Atomic orbital electron populations 1.23269 0.76976 1.04896 1.02353 1.86048 1.22457 1.25528 1.87464 1.20009 0.92053 0.86083 0.94044 1.23085 1.01159 0.86385 1.04492 1.67531 1.09326 1.26739 1.05909 1.21389 0.89359 0.94314 1.07412 1.17461 0.86359 0.83152 0.77469 1.90828 1.13134 1.86277 1.50485 1.45785 1.11485 1.05016 1.71595 1.21413 0.98357 0.81349 0.95895 0.89068 1.21010 0.94654 0.94779 0.87823 1.42357 1.55319 1.29947 1.09963 1.19164 1.18935 1.04150 0.95026 0.91202 1.24739 1.00815 0.97919 0.97269 1.69669 1.47901 1.25762 1.14564 0.86279 0.80858 0.79832 0.79256 1.21294 1.21764 1.21282 1.21967 1.00380 0.97311 0.96208 1.21134 0.96984 0.97322 0.96115 1.21881 0.96184 1.01048 1.01437 1.21821 1.01332 1.00906 0.96067 1.18243 0.78745 0.92768 0.97232 1.91643 1.27214 1.96423 1.92343 1.20783 0.92864 0.97665 1.07589 0.87477 0.91595 0.91811 0.81039 0.74888 0.95809 0.94518 0.77985 0.93506 0.91706 0.91804 0.90333 0.91938 0.92927 0.93137 0.92897 0.92908 0.93034 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.30 -2.66 10.50 -18.88 -0.20 -2.86 16 3 C 0.13 1.34 6.72 -38.86 -0.26 1.08 16 4 C 0.01 0.13 10.21 -17.37 -0.18 -0.05 16 5 N -0.38 -5.61 9.53 -9.63 -0.09 -5.70 16 6 C 0.01 0.24 6.75 -82.96 -0.56 -0.32 16 7 C 0.57 10.53 7.69 -12.37 -0.10 10.43 16 8 O -0.53 -10.92 14.99 5.31 0.08 -10.84 16 9 N -0.69 -12.29 4.53 -54.78 -0.25 -12.54 16 10 C 0.13 2.36 2.08 -67.93 -0.14 2.22 16 11 H 0.09 1.79 5.83 -51.93 -0.30 1.49 16 12 C 0.15 2.89 5.42 -4.04 -0.02 2.86 16 13 N -0.73 -18.45 5.43 -59.91 -0.33 -18.78 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 18 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.12 -1.74 4.40 -26.73 -0.12 -1.86 16 23 C -0.10 -1.27 2.78 -90.62 -0.25 -1.52 16 24 C -0.15 -2.00 9.05 37.16 0.34 -1.67 16 25 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 26 C 0.15 2.22 7.31 -38.86 -0.28 1.93 16 27 F -0.10 -1.56 15.54 2.25 0.03 -1.53 16 28 C -0.16 -1.84 10.10 -39.11 -0.40 -2.24 16 29 H 0.11 0.32 8.14 -51.94 -0.42 -0.10 16 30 H 0.07 0.30 7.67 -51.93 -0.40 -0.09 16 31 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 32 H 0.17 1.38 6.31 -52.49 -0.33 1.05 16 33 H 0.41 7.43 7.90 -40.82 -0.32 7.11 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.73 6.65 -51.93 -0.35 0.38 16 36 H 0.39 10.52 7.33 -40.82 -0.30 10.22 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.08 6.37 -51.93 -0.33 0.75 16 41 H 0.06 0.95 6.36 -51.93 -0.33 0.62 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -33.42 391.02 -6.87 -40.29 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -6.83 Total: 12.89 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.88 Total: 3.43 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.06 Total: -64.64 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.12 Total: -13.70 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.42 -6.87 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753737169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.672 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds