Wall clock time and date at job start Tue Mar 31 2020 23:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35726 * 116.99894 * 2 1 4 4 C 1.39360 * 120.36249 * 359.97438 * 3 2 1 5 5 N 1.31288 * 120.87858 * 179.74324 * 4 3 2 6 6 C 1.32888 * 121.72262 * 0.56956 * 5 4 3 7 7 C 1.47762 * 119.69094 * 179.70610 * 6 5 4 8 8 O 1.21562 * 119.99908 * 179.73264 * 7 6 5 9 9 N 1.34773 * 119.99647 * 359.72796 * 7 6 5 10 10 C 1.46495 * 119.99685 * 185.13867 * 9 7 6 11 11 H 1.08997 * 109.47636 * 321.71305 * 10 9 7 12 12 C 1.53005 * 109.47460 * 201.70989 * 10 9 7 13 13 N 1.46499 * 109.46959 * 54.99719 * 12 10 9 14 14 C 1.36934 * 119.99965 * 179.72736 * 13 12 10 15 15 H 1.08001 * 120.00027 * 0.27724 * 14 13 12 16 16 C 1.38813 * 120.00134 * 180.27992 * 14 13 12 17 17 N 1.31628 * 119.99884 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00168 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46888 * 59.99892 * 18 16 14 20 20 H 1.48500 * 109.46891 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46870 * 299.99564 * 18 16 14 22 22 C 1.53001 * 109.47219 * 81.70961 * 10 9 7 23 23 C 1.52997 * 109.47602 * 184.08164 * 22 10 9 24 24 C 1.52999 * 109.46946 * 66.19030 * 23 22 10 25 25 C 1.53002 * 109.47571 * 186.18879 * 23 22 10 26 26 C 1.39718 * 120.62309 * 359.43637 * 6 5 4 27 27 F 1.35104 * 120.46607 * 180.29766 * 26 6 5 28 28 C 1.38693 * 119.06631 * 0.27032 * 26 6 5 29 29 H 1.08989 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46951 * 300.00651 * 1 2 3 31 31 H 1.09006 * 109.46648 * 59.99947 * 1 2 3 32 32 H 1.07998 * 119.55927 * 0.02562 * 4 3 2 33 33 H 0.97000 * 120.00068 * 5.14282 * 9 7 6 34 34 H 1.09007 * 109.46885 * 295.00600 * 12 10 9 35 35 H 1.08998 * 109.47462 * 175.00402 * 12 10 9 36 36 H 0.96999 * 119.99904 * 0.02562 * 13 12 10 37 37 H 0.96992 * 119.99874 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47166 * 304.08509 * 22 10 9 39 39 H 1.09001 * 109.47059 * 64.08383 * 22 10 9 40 40 H 1.09002 * 109.47367 * 306.19608 * 23 22 10 41 41 H 1.09003 * 109.47354 * 303.80651 * 24 23 22 42 42 H 1.09004 * 109.47519 * 63.80823 * 24 23 22 43 43 H 1.09006 * 109.47184 * 183.80763 * 24 23 22 44 44 H 1.09003 * 109.46725 * 59.99882 * 25 23 22 45 45 H 1.08991 * 109.47009 * 179.97438 * 25 23 22 46 46 H 1.08994 * 109.47058 * 300.00787 * 25 23 22 47 47 H 1.07997 * 120.78575 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3829 -0.0005 5 7 1.8790 3.5580 0.0045 6 6 3.2023 3.6794 -0.0009 7 6 3.8139 5.0245 -0.0015 8 8 5.0238 5.1421 -0.0015 9 7 3.0302 6.1210 -0.0020 10 6 3.6324 7.4516 -0.1162 11 1 4.5610 7.4803 0.4537 12 6 2.6631 8.4992 0.4352 13 7 2.2876 8.1435 1.8059 14 6 1.4271 8.9433 2.5095 15 1 1.0217 9.8338 2.0524 16 6 1.0759 8.6094 3.8103 17 7 1.5696 7.5238 4.3673 18 14 -0.0985 9.7000 4.7699 19 1 -1.3982 9.7765 4.0557 20 1 -0.3100 9.1285 6.1241 21 1 0.4798 11.0623 4.8929 22 6 3.9271 7.7535 -1.5868 23 6 4.6481 9.0985 -1.6969 24 6 6.0294 8.9912 -1.0478 25 6 4.8054 9.4737 -3.1718 26 6 4.0209 2.5471 -0.0005 27 9 5.3659 2.6742 0.0000 28 6 3.4332 1.2908 0.0000 29 1 -0.3633 -1.0275 -0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2151 2.3249 -0.0005 33 1 2.0675 6.0291 0.0733 34 1 1.7701 8.5321 -0.1891 35 1 3.1447 9.4770 0.4324 36 1 2.6520 7.3438 2.2166 37 1 1.3245 7.2907 5.2763 38 1 4.5595 6.9675 -1.9995 39 1 2.9910 7.7965 -2.1436 40 1 4.0656 9.8658 -1.1869 41 1 5.9210 8.6584 -0.0155 42 1 6.6354 8.2725 -1.5995 43 1 6.5160 9.9665 -1.0658 44 1 3.8213 9.5501 -3.6342 45 1 5.3186 10.4320 -3.2501 46 1 5.3878 8.7064 -3.6817 47 1 4.0394 0.3970 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753737169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:03 Heat of formation + Delta-G solvation = -102.242281 kcal Electronic energy + Delta-G solvation = -29947.039858 eV Core-core repulsion = 25658.069304 eV Total energy + Delta-G solvation = -4288.970554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.18062 -41.96864 -40.84680 -39.20356 -38.36766 -36.34926 -35.16370 -33.61276 -32.94557 -31.84067 -30.31549 -28.48324 -28.00132 -27.22641 -25.95791 -24.69719 -24.25747 -22.92445 -21.76381 -20.58460 -19.75254 -19.46680 -19.11258 -18.66088 -17.43357 -17.39125 -17.19972 -16.88437 -16.61968 -16.28378 -16.10646 -15.80604 -15.63919 -15.27777 -15.04434 -14.94975 -14.57858 -14.39600 -14.26981 -14.17792 -13.96034 -13.73952 -13.41345 -13.14112 -12.94750 -12.92288 -12.71981 -12.64685 -12.51630 -12.26112 -12.04046 -11.91271 -11.76177 -11.59817 -11.41156 -11.29986 -10.94050 -10.78617 -10.75390 -10.08115 -9.68136 -8.99976 -7.92214 -5.22521 -0.65609 -0.20412 1.48478 1.51869 1.55469 1.57781 1.80274 2.05605 2.51496 2.57463 2.87900 2.99967 3.32338 3.41366 3.52007 3.73158 3.73980 3.87847 4.00259 4.07668 4.17113 4.20023 4.36520 4.40005 4.41669 4.44973 4.57957 4.67719 4.75241 4.80204 4.82274 4.90837 4.94287 4.99444 5.05407 5.11532 5.13308 5.15486 5.34867 5.48258 5.50077 5.52497 5.57594 5.94529 6.27338 6.29708 6.57787 7.10555 7.34395 8.07435 8.31844 9.30884 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007176 B = 0.004001 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.834436 B = 6996.194457 C = 9861.440627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.304 6.304 3 C 0.147 3.853 4 C 0.016 3.984 5 N -0.403 5.403 6 C -0.018 4.018 7 C 0.566 3.434 8 O -0.564 6.564 9 N -0.688 5.688 10 C 0.142 3.858 11 H 0.065 0.935 12 C 0.149 3.851 13 N -0.743 5.743 14 C -0.244 4.244 15 H 0.080 0.920 16 C -0.073 4.073 17 N -0.970 5.970 18 Si 0.975 3.025 19 H -0.274 1.274 20 H -0.299 1.299 21 H -0.279 1.279 22 C -0.107 4.107 23 C -0.095 4.095 24 C -0.147 4.147 25 C -0.138 4.138 26 C 0.140 3.860 27 F -0.114 7.114 28 C -0.157 4.157 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.206 0.794 33 H 0.413 0.587 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 -13.266 -15.836 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.214 6.214 3 C 0.097 3.903 4 C -0.148 4.148 5 N -0.115 5.115 6 C -0.155 4.155 7 C 0.352 3.648 8 O -0.443 6.443 9 N -0.338 5.338 10 C 0.038 3.962 11 H 0.083 0.917 12 C 0.022 3.978 13 N -0.386 5.386 14 C -0.376 4.376 15 H 0.098 0.902 16 C -0.266 4.266 17 N -0.621 5.621 18 Si 0.804 3.196 19 H -0.200 1.200 20 H -0.225 1.225 21 H -0.205 1.205 22 C -0.146 4.146 23 C -0.114 4.114 24 C -0.204 4.204 25 C -0.196 4.196 26 C 0.117 3.883 27 F -0.092 7.092 28 C -0.183 4.183 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.223 0.777 33 H 0.250 0.750 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.204 0.796 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.119 -12.424 -15.833 20.156 hybrid contribution -0.136 -0.487 1.263 1.360 sum -1.255 -12.911 -14.570 19.508 Atomic orbital electron populations 1.23680 0.74654 1.06997 1.03478 1.86083 1.24742 1.24152 1.86469 1.19996 0.91776 0.86711 0.91813 1.23659 1.02683 0.85646 1.02809 1.67478 1.08636 1.28569 1.06787 1.21033 0.90359 0.93348 1.10808 1.17887 0.86088 0.84245 0.76597 1.90786 1.14426 1.86982 1.52141 1.45777 1.11325 1.05108 1.71548 1.21289 0.96476 0.80956 0.97522 0.91658 1.21127 0.95493 0.95638 0.85503 1.42540 1.55052 1.29247 1.11783 1.19614 1.18390 1.04274 0.95324 0.90165 1.25574 1.03039 0.99454 0.98492 1.69851 1.49847 1.27831 1.14546 0.85197 0.79101 0.78036 0.77308 1.20003 1.22500 1.20531 1.21873 1.01061 0.97960 0.93733 1.21140 0.96261 0.96146 0.97874 1.21862 0.96834 1.01830 0.99869 1.21770 1.02181 1.01593 0.94019 1.18416 0.78092 0.93628 0.98205 1.91595 1.28328 1.96596 1.92675 1.20991 0.93679 0.97123 1.06536 0.85068 0.90910 0.90189 0.77746 0.74990 0.94479 0.93811 0.79615 0.94186 0.92512 0.90389 0.90687 0.94525 0.92927 0.91513 0.91933 0.91632 0.92774 0.79610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.82 113.37 1.11 1.15 16 2 O -0.30 -4.34 10.50 -90.48 -0.95 -5.29 16 3 C 0.15 2.79 6.72 22.73 0.15 2.94 16 4 C 0.02 0.33 10.21 85.04 0.87 1.20 16 5 N -0.40 -11.77 9.53 -184.39 -1.76 -13.53 16 6 C -0.02 -0.60 6.75 41.86 0.28 -0.32 16 7 C 0.57 22.07 7.69 86.76 0.67 22.74 16 8 O -0.56 -24.80 14.99 -3.91 -0.06 -24.86 16 9 N -0.69 -25.66 4.53 -445.49 -2.02 -27.68 16 10 C 0.14 5.17 2.08 44.99 0.09 5.26 16 11 H 0.07 2.74 5.83 -2.39 -0.01 2.73 16 12 C 0.15 5.96 5.42 86.38 0.47 6.42 16 13 N -0.74 -38.24 5.43 -343.44 -1.87 -40.11 16 14 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 17 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 18 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.11 -3.13 4.40 30.59 0.13 -2.99 16 23 C -0.10 -2.44 2.78 -10.79 -0.03 -2.47 16 24 C -0.15 -4.00 9.05 71.98 0.65 -3.34 16 25 C -0.14 -2.78 9.19 71.98 0.66 -2.12 16 26 C 0.14 4.15 7.31 22.74 0.17 4.31 16 27 F -0.11 -3.80 15.54 44.97 0.70 -3.10 16 28 C -0.16 -3.39 10.10 22.57 0.23 -3.16 16 29 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.07 0.41 7.67 -2.38 -0.02 0.40 16 31 H 0.08 0.30 7.67 -2.38 -0.02 0.28 16 32 H 0.21 2.67 6.31 -2.91 -0.02 2.65 16 33 H 0.41 15.37 7.90 -92.71 -0.73 14.64 16 34 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.04 1.72 6.65 -2.39 -0.02 1.70 16 36 H 0.37 21.07 7.33 -92.71 -0.68 20.39 16 37 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.06 1.77 8.12 -2.39 -0.02 1.75 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 1.98 6.37 -2.39 -0.02 1.97 16 41 H 0.04 1.17 6.36 -2.39 -0.02 1.16 16 42 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -74.44 391.02 2.72 -71.72 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: -0.40 Total: 41.72 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.76 Total: 13.09 kcal Atomic # 7 Polarization: -136.08 SS G_CDS: -5.36 Total: -141.44 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.01 Total: -30.15 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.70 Total: -3.10 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.44 2.72 -71.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753737169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.523 kcal (2) G-P(sol) polarization free energy of solvation -74.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds