Wall clock time and date at job start Tue Mar 31 2020 23:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 120.00313 * 2 1 4 4 H 1.07996 * 120.00002 * 204.53991 * 3 2 1 5 5 C 1.38808 * 119.99814 * 24.53986 * 3 2 1 6 6 N 1.31625 * 119.99952 * 14.09636 * 5 3 2 7 7 Si 1.86797 * 120.00020 * 194.09600 * 5 3 2 8 8 H 1.48500 * 109.47128 * 59.99786 * 7 5 3 9 9 H 1.48502 * 109.47114 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46826 * 299.99677 * 7 5 3 11 11 C 1.46499 * 119.99700 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47117 * 89.99887 * 11 2 1 13 13 C 1.53000 * 109.47541 * 180.02562 * 12 11 2 14 14 N 1.46494 * 109.47783 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00181 * 270.00229 * 14 13 12 16 16 C 1.34777 * 120.00090 * 89.99282 * 14 13 12 17 17 O 1.21623 * 120.00182 * 0.59097 * 16 14 13 18 18 C 1.47260 * 120.00045 * 180.58365 * 16 14 13 19 19 N 1.30561 * 125.54122 * 170.75581 * 18 16 14 20 20 C 1.30700 * 115.90595 * 180.17961 * 19 18 16 21 21 C 1.50698 * 122.11035 * 179.80068 * 20 19 18 22 22 C 1.52995 * 109.47215 * 254.71308 * 21 20 19 23 23 C 1.52997 * 109.46710 * 14.71601 * 21 20 19 24 24 C 1.53003 * 109.46807 * 134.71056 * 21 20 19 25 25 C 1.34234 * 115.78314 * 359.53208 * 20 19 18 26 26 S 1.71079 * 109.09074 * 0.24931 * 25 20 19 27 27 H 1.09004 * 109.47209 * 272.49838 * 1 2 3 28 28 H 1.09000 * 109.46995 * 32.49134 * 1 2 3 29 29 H 1.08992 * 109.47753 * 152.50029 * 1 2 3 30 30 H 0.97003 * 119.99716 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47673 * 329.99809 * 11 2 1 32 32 H 1.09001 * 109.47109 * 209.99633 * 11 2 1 33 33 H 1.08999 * 109.47614 * 59.99603 * 12 11 2 34 34 H 1.09004 * 109.47645 * 299.99749 * 12 11 2 35 35 H 1.08999 * 109.47008 * 59.99210 * 13 12 11 36 36 H 1.09001 * 109.46880 * 299.99866 * 13 12 11 37 37 H 1.08998 * 109.46853 * 263.61420 * 15 14 13 38 38 H 1.09004 * 109.46520 * 23.60787 * 15 14 13 39 39 H 1.08996 * 109.47610 * 143.61516 * 15 14 13 40 40 H 1.08999 * 109.46892 * 60.00261 * 22 21 20 41 41 H 1.09006 * 109.46637 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47369 * 299.99407 * 22 21 20 43 43 H 1.09001 * 109.47644 * 60.00032 * 23 21 20 44 44 H 1.09006 * 109.46990 * 179.97438 * 23 21 20 45 45 H 1.09003 * 109.47004 * 299.99491 * 23 21 20 46 46 H 1.09000 * 109.47209 * 60.00313 * 24 21 20 47 47 H 1.09005 * 109.46901 * 180.02562 * 24 21 20 48 48 H 1.08993 * 109.47426 * 300.00183 * 24 21 20 49 49 H 1.07998 * 125.45795 * 180.20880 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1565 1.2281 -0.3884 5 6 1.5498 2.3338 0.4993 6 7 0.4509 2.2426 1.2181 7 14 2.3018 4.0078 0.1510 8 1 2.3461 4.2351 -1.3158 9 1 1.4772 5.0638 0.7915 10 1 3.6803 4.0553 0.7012 11 6 2.1974 -1.2688 -0.0006 12 6 2.4523 -1.7098 -1.4432 13 6 3.2167 -3.0352 -1.4439 14 7 3.4603 -3.4578 -2.8253 15 6 2.4831 -4.3030 -3.5159 16 6 4.5834 -3.0690 -3.4609 17 8 5.3998 -2.3762 -2.8841 18 6 4.8222 -3.4833 -4.8537 19 7 5.7761 -3.0369 -5.6253 20 6 5.8117 -3.5326 -6.8342 21 6 6.8508 -3.1128 -7.8417 22 6 6.2105 -2.1899 -8.8804 23 6 7.9823 -2.3703 -7.1281 24 6 7.4146 -4.3524 -8.5394 25 6 4.8678 -4.4432 -7.1199 26 16 3.8720 -4.6666 -5.7468 27 1 -0.3634 0.0448 1.0267 28 1 -0.3633 0.8668 -0.5520 29 1 -0.3634 -0.9114 -0.4745 30 1 0.0315 3.0447 1.5667 31 1 1.6084 -2.0286 0.5129 32 1 3.1499 -1.1387 0.5133 33 1 3.0414 -0.9500 -1.9568 34 1 1.4999 -1.8399 -1.9572 35 1 2.6273 -3.7948 -0.9305 36 1 4.1692 -2.9055 -0.9300 37 1 2.7878 -5.3468 -3.4404 38 1 1.5033 -4.1763 -3.0552 39 1 2.4310 -4.0148 -4.5658 40 1 5.8089 -1.3068 -8.3833 41 1 6.9621 -1.8867 -9.6094 42 1 5.4044 -2.7189 -9.3888 43 1 8.4385 -3.0279 -6.3881 44 1 8.7342 -2.0671 -7.8568 45 1 7.5807 -1.4873 -6.6311 46 1 6.6085 -4.8814 -9.0477 47 1 8.1665 -4.0488 -9.2678 48 1 7.8707 -5.0099 -7.7994 49 1 4.7546 -4.9527 -8.0654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755039543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:21 Heat of formation + Delta-G solvation = 31.746153 kcal Electronic energy + Delta-G solvation = -27220.945838 eV Core-core repulsion = 23503.998634 eV Total energy + Delta-G solvation = -3716.947204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.73761 -39.67516 -36.50845 -36.07252 -35.39683 -32.49621 -30.72907 -29.94303 -27.90525 -27.57553 -27.34028 -26.54566 -25.77231 -24.85393 -23.01039 -21.58282 -20.19452 -19.53844 -19.33521 -17.91673 -16.97587 -16.66938 -16.29506 -15.97540 -15.64722 -14.89431 -14.72650 -14.32817 -14.23151 -14.06324 -13.79284 -13.68275 -13.39870 -13.28993 -13.20499 -12.82784 -12.64350 -12.53494 -12.37592 -12.05487 -11.92298 -11.75931 -11.31563 -11.22786 -11.15682 -10.97560 -10.85245 -10.74413 -10.71813 -10.44289 -10.40245 -10.13819 -9.88162 -9.80976 -9.74956 -9.70733 -8.95436 -8.79877 -8.43816 -6.64257 -5.66385 -3.12672 0.05163 0.94339 1.42148 2.16833 2.58729 3.11202 3.45941 3.49701 3.52986 3.84312 4.30022 4.49623 4.57615 4.67453 4.69123 4.83014 4.90973 4.98418 5.07320 5.26136 5.26761 5.32739 5.40373 5.42048 5.46225 5.50804 5.56122 5.61691 5.69515 5.75741 5.76377 5.95584 5.98014 6.01544 6.05876 6.11345 6.22984 6.47242 6.53489 6.77374 6.84146 7.05749 7.08862 7.39860 7.44678 7.74136 7.89692 7.98419 8.48866 9.31555 9.94912 10.44209 11.39199 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.002519 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.092200 B =11114.243666 C =12367.067239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.602 5.602 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.909 5.909 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.155 3.845 12 C -0.154 4.154 13 C 0.120 3.880 14 N -0.604 5.604 15 C 0.061 3.939 16 C 0.589 3.411 17 O -0.492 6.492 18 C 0.001 3.999 19 N -0.390 5.390 20 C 0.070 3.930 21 C 0.002 3.998 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.291 4.291 26 S 0.193 5.807 27 H 0.027 0.973 28 H 0.041 0.959 29 H -0.004 1.004 30 H 0.252 0.748 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.057 0.943 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -20.429 -19.937 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.208 1.208 11 C 0.027 3.973 12 C -0.195 4.195 13 C -0.002 4.002 14 N -0.338 5.338 15 C -0.084 4.084 16 C 0.372 3.628 17 O -0.365 6.365 18 C -0.276 4.276 19 N -0.105 5.105 20 C -0.067 4.067 21 C -0.001 4.001 22 C -0.196 4.196 23 C -0.190 4.190 24 C -0.196 4.196 25 C -0.431 4.431 26 S 0.450 5.550 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.635 -20.139 -19.042 28.499 hybrid contribution 0.773 1.132 -1.119 1.769 sum 7.408 -19.007 -20.161 28.681 Atomic orbital electron populations 1.20746 0.82885 0.95640 0.98900 1.43859 1.01715 1.00766 1.86098 1.19156 0.99203 0.85880 1.34068 0.91529 1.25028 0.98208 0.98586 0.97847 1.70063 1.21383 1.27481 1.36440 0.86357 0.78506 0.83888 0.77968 1.21109 1.21680 1.20819 1.20618 0.96222 0.88427 0.92004 1.22659 0.99305 0.95221 1.02315 1.21730 1.01967 0.97372 0.79134 1.47706 1.19542 1.51143 1.15407 1.22068 0.94553 0.94838 0.96931 1.16741 0.82308 0.80785 0.82981 1.90891 1.44562 1.35799 1.65205 1.27512 0.98020 1.02111 0.99952 1.66414 1.18435 1.22883 1.02766 1.20171 0.98473 0.96325 0.91777 1.19221 0.92619 0.96093 0.92154 1.21889 1.00587 0.99281 0.97807 1.21735 0.96512 1.00986 0.99736 1.21921 1.00881 0.96533 1.00248 1.26957 1.02254 1.06366 1.07513 1.84305 1.28721 1.39082 1.02899 0.95448 0.94070 0.98537 0.93795 0.94663 0.93278 0.91590 0.92738 0.90162 0.89421 0.91320 0.88295 0.91158 0.92156 0.91754 0.92582 0.92442 0.92651 0.91435 0.92518 0.91708 0.92371 0.80531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 8.99 59.85 0.54 4.61 16 2 N -0.60 -15.60 2.92 -181.13 -0.53 -16.13 16 3 C -0.25 -7.28 9.63 -15.06 -0.14 -7.42 16 4 H 0.07 1.91 7.87 -52.49 -0.41 1.50 16 5 C 0.00 0.04 5.05 -17.43 -0.09 -0.05 16 6 N -0.91 -27.25 10.89 55.49 0.60 -26.65 16 7 Si 0.90 22.80 29.58 -169.99 -5.03 17.77 16 8 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 11 C 0.16 3.21 5.66 -4.04 -0.02 3.19 16 12 C -0.15 -2.71 5.86 -26.73 -0.16 -2.87 16 13 C 0.12 1.65 5.38 -4.04 -0.02 1.63 16 14 N -0.60 -7.74 2.87 -182.91 -0.53 -8.26 16 15 C 0.06 0.51 8.93 59.85 0.53 1.04 16 16 C 0.59 9.25 7.67 -12.59 -0.10 9.15 16 17 O -0.49 -9.84 16.65 5.26 0.09 -9.75 16 18 C 0.00 0.01 7.22 -14.43 -0.10 -0.10 16 19 N -0.39 -5.62 9.53 -7.69 -0.07 -5.70 16 20 C 0.07 0.78 5.38 -84.49 -0.45 0.33 16 21 C 0.00 0.02 0.90 -155.66 -0.14 -0.12 16 22 C -0.14 -1.11 8.42 37.16 0.31 -0.80 16 23 C -0.13 -1.35 7.89 37.16 0.29 -1.06 16 24 C -0.14 -0.94 8.12 37.16 0.30 -0.64 16 25 C -0.29 -2.55 10.10 29.32 0.30 -2.25 16 26 S 0.19 1.64 18.09 -107.50 -1.94 -0.30 16 27 H 0.03 0.73 7.46 -51.93 -0.39 0.35 16 28 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 29 H 0.00 -0.08 8.05 -51.93 -0.42 -0.50 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.86 8.07 -51.93 -0.42 0.45 16 36 H 0.09 1.33 7.41 -51.93 -0.38 0.94 16 37 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 38 H 0.10 0.69 8.02 -51.93 -0.42 0.28 16 39 H 0.07 0.56 4.61 -23.54 -0.11 0.46 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.83 7.95 -51.93 -0.41 0.41 16 46 H 0.06 0.32 7.07 -51.93 -0.37 -0.05 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.18 1.06 7.23 -52.49 -0.38 0.68 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -35.18 403.59 -8.55 -43.72 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -8.27 Total: -5.41 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 1.05 Total: 4.63 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.52 Total: -56.74 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.94 Total: -0.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.18 -8.55 -43.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755039543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.471 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds