Wall clock time and date at job start Tue Mar 31 2020 23:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 120.00313 * 2 1 4 4 H 1.07996 * 120.00002 * 204.53991 * 3 2 1 5 5 C 1.38808 * 119.99814 * 24.53986 * 3 2 1 6 6 N 1.31625 * 119.99952 * 14.09636 * 5 3 2 7 7 Si 1.86797 * 120.00020 * 194.09600 * 5 3 2 8 8 H 1.48500 * 109.47128 * 59.99786 * 7 5 3 9 9 H 1.48502 * 109.47114 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46826 * 299.99677 * 7 5 3 11 11 C 1.46499 * 119.99700 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47117 * 89.99887 * 11 2 1 13 13 C 1.53000 * 109.47541 * 180.02562 * 12 11 2 14 14 N 1.46494 * 109.47783 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00181 * 270.00229 * 14 13 12 16 16 C 1.34777 * 120.00090 * 89.99282 * 14 13 12 17 17 O 1.21623 * 120.00182 * 0.59097 * 16 14 13 18 18 C 1.47260 * 120.00045 * 180.58365 * 16 14 13 19 19 N 1.30561 * 125.54122 * 170.75581 * 18 16 14 20 20 C 1.30700 * 115.90595 * 180.17961 * 19 18 16 21 21 C 1.50698 * 122.11035 * 179.80068 * 20 19 18 22 22 C 1.52995 * 109.47215 * 254.71308 * 21 20 19 23 23 C 1.52997 * 109.46710 * 14.71601 * 21 20 19 24 24 C 1.53003 * 109.46807 * 134.71056 * 21 20 19 25 25 C 1.34234 * 115.78314 * 359.53208 * 20 19 18 26 26 S 1.71079 * 109.09074 * 0.24931 * 25 20 19 27 27 H 1.09004 * 109.47209 * 272.49838 * 1 2 3 28 28 H 1.09000 * 109.46995 * 32.49134 * 1 2 3 29 29 H 1.08992 * 109.47753 * 152.50029 * 1 2 3 30 30 H 0.97003 * 119.99716 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47673 * 329.99809 * 11 2 1 32 32 H 1.09001 * 109.47109 * 209.99633 * 11 2 1 33 33 H 1.08999 * 109.47614 * 59.99603 * 12 11 2 34 34 H 1.09004 * 109.47645 * 299.99749 * 12 11 2 35 35 H 1.08999 * 109.47008 * 59.99210 * 13 12 11 36 36 H 1.09001 * 109.46880 * 299.99866 * 13 12 11 37 37 H 1.08998 * 109.46853 * 263.61420 * 15 14 13 38 38 H 1.09004 * 109.46520 * 23.60787 * 15 14 13 39 39 H 1.08996 * 109.47610 * 143.61516 * 15 14 13 40 40 H 1.08999 * 109.46892 * 60.00261 * 22 21 20 41 41 H 1.09006 * 109.46637 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47369 * 299.99407 * 22 21 20 43 43 H 1.09001 * 109.47644 * 60.00032 * 23 21 20 44 44 H 1.09006 * 109.46990 * 179.97438 * 23 21 20 45 45 H 1.09003 * 109.47004 * 299.99491 * 23 21 20 46 46 H 1.09000 * 109.47209 * 60.00313 * 24 21 20 47 47 H 1.09005 * 109.46901 * 180.02562 * 24 21 20 48 48 H 1.08993 * 109.47426 * 300.00183 * 24 21 20 49 49 H 1.07998 * 125.45795 * 180.20880 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1565 1.2281 -0.3884 5 6 1.5498 2.3338 0.4993 6 7 0.4509 2.2426 1.2181 7 14 2.3018 4.0078 0.1510 8 1 2.3461 4.2351 -1.3158 9 1 1.4772 5.0638 0.7915 10 1 3.6803 4.0553 0.7012 11 6 2.1974 -1.2688 -0.0006 12 6 2.4523 -1.7098 -1.4432 13 6 3.2167 -3.0352 -1.4439 14 7 3.4603 -3.4578 -2.8253 15 6 2.4831 -4.3030 -3.5159 16 6 4.5834 -3.0690 -3.4609 17 8 5.3998 -2.3762 -2.8841 18 6 4.8222 -3.4833 -4.8537 19 7 5.7761 -3.0369 -5.6253 20 6 5.8117 -3.5326 -6.8342 21 6 6.8508 -3.1128 -7.8417 22 6 6.2105 -2.1899 -8.8804 23 6 7.9823 -2.3703 -7.1281 24 6 7.4146 -4.3524 -8.5394 25 6 4.8678 -4.4432 -7.1199 26 16 3.8720 -4.6666 -5.7468 27 1 -0.3634 0.0448 1.0267 28 1 -0.3633 0.8668 -0.5520 29 1 -0.3634 -0.9114 -0.4745 30 1 0.0315 3.0447 1.5667 31 1 1.6084 -2.0286 0.5129 32 1 3.1499 -1.1387 0.5133 33 1 3.0414 -0.9500 -1.9568 34 1 1.4999 -1.8399 -1.9572 35 1 2.6273 -3.7948 -0.9305 36 1 4.1692 -2.9055 -0.9300 37 1 2.7878 -5.3468 -3.4404 38 1 1.5033 -4.1763 -3.0552 39 1 2.4310 -4.0148 -4.5658 40 1 5.8089 -1.3068 -8.3833 41 1 6.9621 -1.8867 -9.6094 42 1 5.4044 -2.7189 -9.3888 43 1 8.4385 -3.0279 -6.3881 44 1 8.7342 -2.0671 -7.8568 45 1 7.5807 -1.4873 -6.6311 46 1 6.6085 -4.8814 -9.0477 47 1 8.1665 -4.0488 -9.2678 48 1 7.8707 -5.0099 -7.7994 49 1 4.7546 -4.9527 -8.0654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755039543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:20 Heat of formation + Delta-G solvation = 8.908890 kcal Electronic energy + Delta-G solvation = -27221.936136 eV Core-core repulsion = 23503.998634 eV Total energy + Delta-G solvation = -3717.937502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61459 -40.69839 -37.96754 -37.02830 -36.79574 -34.21182 -32.32281 -31.01862 -28.77318 -28.30956 -28.16519 -27.91432 -27.50943 -26.06494 -24.32716 -22.82266 -21.91529 -20.42299 -20.19269 -18.81476 -18.68250 -17.85705 -17.45190 -16.97438 -16.87058 -16.37634 -15.83874 -15.66206 -15.49172 -15.00956 -14.85615 -14.64212 -14.52536 -14.45800 -14.41838 -14.21523 -14.02926 -13.39807 -13.11406 -13.07537 -13.00814 -12.80640 -12.71816 -12.59872 -12.58261 -12.52661 -12.28914 -12.12884 -11.92737 -11.90190 -11.83420 -11.57004 -11.50425 -11.41148 -10.71514 -10.67162 -10.63187 -9.83723 -9.69658 -8.74408 -7.86604 -5.35182 -0.78943 0.13649 0.68069 1.24527 1.41472 1.43245 1.50737 1.62264 2.11865 2.48145 3.04983 3.25763 3.51415 3.69645 3.82658 3.97919 4.03148 4.06889 4.18039 4.27404 4.30328 4.35959 4.51003 4.52933 4.61443 4.69403 4.73633 4.75635 4.77461 4.81890 4.86201 4.87161 4.92636 4.98446 4.99896 5.13187 5.22443 5.26534 5.29386 5.37907 5.39026 5.42376 5.53996 5.61167 5.69428 6.05811 6.32642 6.65238 6.91852 7.14484 7.87886 8.29088 9.16028 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.002519 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.092200 B =11114.243666 C =12367.067239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.622 5.622 3 C -0.265 4.265 4 H 0.054 0.946 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.962 3.038 8 H -0.283 1.283 9 H -0.286 1.286 10 H -0.278 1.278 11 C 0.152 3.848 12 C -0.133 4.133 13 C 0.127 3.873 14 N -0.599 5.599 15 C 0.051 3.949 16 C 0.580 3.420 17 O -0.559 6.559 18 C -0.059 4.059 19 N -0.432 5.432 20 C 0.044 3.956 21 C -0.001 4.001 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.281 4.281 26 S 0.301 5.699 27 H 0.004 0.996 28 H 0.012 0.988 29 H 0.039 0.961 30 H 0.250 0.750 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.049 0.951 49 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 -23.665 -22.539 33.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.345 5.345 3 C -0.396 4.396 4 H 0.072 0.928 5 C -0.244 4.244 6 N -0.580 5.580 7 Si 0.790 3.210 8 H -0.209 1.209 9 H -0.211 1.211 10 H -0.204 1.204 11 C 0.026 3.974 12 C -0.175 4.175 13 C 0.005 3.995 14 N -0.331 5.331 15 C -0.093 4.093 16 C 0.365 3.635 17 O -0.437 6.437 18 C -0.332 4.332 19 N -0.149 5.149 20 C -0.094 4.094 21 C -0.004 4.004 22 C -0.192 4.192 23 C -0.187 4.187 24 C -0.190 4.190 25 C -0.421 4.421 26 S 0.557 5.443 27 H 0.023 0.977 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.293 -23.434 -21.652 32.342 hybrid contribution 1.135 1.998 -0.397 2.332 sum 6.428 -21.436 -22.049 31.416 Atomic orbital electron populations 1.20538 0.82472 0.96412 0.97473 1.44138 1.02337 1.01699 1.86367 1.19331 0.99020 0.87633 1.33571 0.92770 1.25722 0.98949 1.01670 0.98097 1.70194 1.22441 1.28003 1.37363 0.85428 0.77853 0.80038 0.77676 1.20938 1.21150 1.20413 1.20804 0.95479 0.87189 0.93956 1.22335 0.99538 0.96038 0.99542 1.21581 1.01052 0.96563 0.80293 1.47753 1.19491 1.50797 1.15060 1.22463 0.94469 0.95546 0.96775 1.17265 0.82262 0.79912 0.84026 1.90831 1.46889 1.38939 1.67086 1.27101 1.00715 1.05749 0.99675 1.66380 1.19824 1.24421 1.04318 1.20485 1.00067 0.97498 0.91339 1.19335 0.91777 0.97239 0.92014 1.21868 1.01442 0.98260 0.97612 1.21688 0.97570 0.99595 0.99809 1.21890 1.01788 0.95210 1.00115 1.27527 1.00725 1.04624 1.09197 1.83709 1.25506 1.34705 1.00346 0.97732 0.96933 0.94213 0.94076 0.91418 0.94839 0.96236 0.91502 0.85584 0.91525 0.88186 0.85997 0.90908 0.94655 0.90207 0.90901 0.94065 0.90711 0.94582 0.90464 0.90383 0.93203 0.76932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 8.99 127.77 1.15 9.91 16 2 N -0.62 -32.61 2.92 -726.97 -2.12 -34.73 16 3 C -0.27 -15.67 9.63 84.03 0.81 -14.86 16 4 H 0.05 3.26 7.87 -2.91 -0.02 3.24 16 5 C -0.05 -2.90 5.05 84.86 0.43 -2.47 16 6 N -0.93 -57.09 10.89 21.65 0.24 -56.85 16 7 Si 0.96 47.98 29.58 68.60 2.03 50.01 16 8 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 9 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 11 C 0.15 6.24 5.66 86.38 0.49 6.73 16 12 C -0.13 -4.69 5.86 30.59 0.18 -4.51 16 13 C 0.13 3.38 5.38 86.38 0.46 3.85 16 14 N -0.60 -14.73 2.87 -850.87 -2.44 -17.18 16 15 C 0.05 0.65 8.93 127.77 1.14 1.79 16 16 C 0.58 18.99 7.67 86.62 0.66 19.66 16 17 O -0.56 -24.46 16.65 -4.10 -0.07 -24.53 16 18 C -0.06 -1.62 7.22 87.26 0.63 -0.99 16 19 N -0.43 -13.01 9.53 -178.24 -1.70 -14.71 16 20 C 0.04 0.94 5.38 41.81 0.22 1.16 16 21 C 0.00 -0.02 0.90 -52.93 -0.05 -0.07 16 22 C -0.13 -1.98 8.42 71.98 0.61 -1.38 16 23 C -0.13 -2.79 7.89 71.98 0.57 -2.22 16 24 C -0.13 -1.47 8.12 71.98 0.58 -0.89 16 25 C -0.28 -3.98 10.10 66.91 0.68 -3.30 16 26 S 0.30 4.11 18.09 -56.49 -1.02 3.09 16 27 H 0.00 0.24 7.46 -2.38 -0.02 0.22 16 28 H 0.01 0.65 7.30 -2.39 -0.02 0.64 16 29 H 0.04 1.60 8.05 -2.39 -0.02 1.58 16 30 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 32 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.13 2.23 8.07 -2.39 -0.02 2.21 16 36 H 0.07 2.09 7.41 -2.39 -0.02 2.07 16 37 H 0.10 0.72 7.79 -2.39 -0.02 0.71 16 38 H 0.12 1.10 8.02 -2.38 -0.02 1.08 16 39 H 0.07 0.90 4.61 -20.44 -0.09 0.80 16 40 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.03 0.98 7.95 -2.39 -0.02 0.96 16 46 H 0.08 0.54 7.07 -2.39 -0.02 0.52 16 47 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.21 1.36 7.23 -2.91 -0.02 1.34 16 Total: -1.00 -84.20 403.59 4.31 -79.89 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 0.83 Total: 2.59 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 8.57 Total: 12.42 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -6.03 Total: -123.48 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.53 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.02 Total: 3.09 kcal Total: -84.20 4.31 -79.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755039543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.800 kcal (2) G-P(sol) polarization free energy of solvation -84.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds