Wall clock time and date at job start Tue Mar 31 2020 23:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47010 * 2 1 4 4 N 1.29030 * 124.92107 * 90.00036 * 3 2 1 5 5 C 1.31776 * 117.12815 * 180.02562 * 4 3 2 6 6 C 1.50699 * 122.74832 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47622 * 305.02506 * 6 5 4 8 8 O 1.21286 * 119.99308 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00280 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99930 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47395 * 90.00028 * 10 9 7 12 12 N 1.46498 * 109.47395 * 179.97438 * 11 10 9 13 13 C 1.46497 * 120.00047 * 90.00309 * 12 11 10 14 14 C 1.36942 * 120.00072 * 269.99902 * 12 11 10 15 15 H 1.08000 * 119.99948 * 145.48610 * 14 12 11 16 16 C 1.38810 * 120.00068 * 325.49070 * 14 12 11 17 17 N 1.31613 * 119.99961 * 154.00592 * 16 14 12 18 18 Si 1.86797 * 119.99993 * 334.00605 * 16 14 12 19 19 H 1.48502 * 109.47175 * 95.25812 * 18 16 14 20 20 H 1.48501 * 109.47244 * 215.25776 * 18 16 14 21 21 H 1.48498 * 109.47421 * 335.26104 * 18 16 14 22 22 C 1.46505 * 120.00253 * 0.02562 * 9 7 6 23 23 C 1.52999 * 109.47307 * 119.99895 * 22 9 7 24 24 C 1.53000 * 109.46768 * 239.99819 * 22 9 7 25 25 C 1.33635 * 114.50224 * 0.23125 * 5 4 3 26 26 S 1.70982 * 124.91564 * 269.99901 * 3 2 1 27 27 H 1.09003 * 109.46994 * 299.99947 * 1 2 3 28 28 H 1.08997 * 109.47414 * 60.00153 * 1 2 3 29 29 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47678 * 239.99910 * 2 1 3 31 31 H 1.09002 * 109.46982 * 119.99763 * 2 1 3 32 32 H 1.09003 * 109.47323 * 65.03007 * 6 5 4 33 33 H 1.09002 * 109.47481 * 185.01984 * 6 5 4 34 34 H 1.09003 * 109.47465 * 209.99978 * 10 9 7 35 35 H 1.08999 * 109.47563 * 330.00219 * 10 9 7 36 36 H 1.09002 * 109.47178 * 300.00022 * 11 10 9 37 37 H 1.09005 * 109.46805 * 60.00309 * 11 10 9 38 38 H 1.09000 * 109.47505 * 85.10396 * 13 12 11 39 39 H 1.09006 * 109.46935 * 205.10627 * 13 12 11 40 40 H 1.09004 * 109.46909 * 325.10102 * 13 12 11 41 41 H 0.97012 * 119.99890 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.46866 * 359.97438 * 22 9 7 43 43 H 1.08993 * 109.47290 * 59.99499 * 23 22 9 44 44 H 1.08999 * 109.46744 * 180.02562 * 23 22 9 45 45 H 1.09007 * 109.46681 * 299.99892 * 23 22 9 46 46 H 1.09001 * 109.47268 * 59.99820 * 24 22 9 47 47 H 1.08999 * 109.47048 * 179.97438 * 24 22 9 48 48 H 1.09001 * 109.47638 * 299.99698 * 24 22 9 49 49 H 1.07996 * 126.04098 * 179.77196 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1172 1.0580 5 6 2.7131 3.3483 0.8793 6 6 3.0391 4.2720 2.0245 7 6 1.8442 4.3831 2.9362 8 8 0.8279 3.7725 2.6807 9 7 1.9051 5.1607 4.0352 10 6 0.7433 5.2690 4.9210 11 6 0.8196 4.1841 5.9972 12 7 -0.3419 4.2928 6.8834 13 6 -1.5700 3.5562 6.5751 14 6 -0.2795 5.0830 8.0001 15 1 -1.1572 5.6164 8.3340 16 6 0.9120 5.1985 8.7030 17 7 1.1524 6.2771 9.4178 18 14 2.1741 3.8232 8.6341 19 1 3.1809 4.1273 7.5857 20 1 2.8507 3.7058 9.9508 21 1 1.4943 2.5431 8.3110 22 6 3.1326 5.8986 4.3434 23 6 2.8312 7.3983 4.3776 24 6 3.6659 5.4544 5.7069 25 6 2.8361 3.7123 -0.4006 26 16 2.3585 2.3435 -1.4020 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8863 3.8738 2.5828 33 1 3.2920 5.2583 1.6352 34 1 0.7377 6.2507 5.3946 35 1 -0.1699 5.1407 4.3400 36 1 0.8251 3.2024 5.5236 37 1 1.7328 4.3125 6.5783 38 1 -1.4956 2.5436 6.9716 39 1 -2.4214 4.0628 7.0297 40 1 -1.7069 3.5142 5.4945 41 1 1.9849 6.3577 9.9093 42 1 3.8807 5.6954 3.5772 43 1 2.0832 7.6011 5.1439 44 1 3.7446 7.9472 4.6065 45 1 2.4513 7.7147 3.4062 46 1 3.8806 4.3860 5.6826 47 1 4.5794 6.0030 5.9361 48 1 2.9179 5.6572 6.4734 49 1 3.1713 4.6747 -0.7581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755815150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:09 Heat of formation + Delta-G solvation = 37.516457 kcal Electronic energy + Delta-G solvation = -28594.062666 eV Core-core repulsion = 24877.365682 eV Total energy + Delta-G solvation = -3716.696984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44076 -39.30614 -36.64915 -35.51468 -34.43767 -31.89954 -31.45787 -31.23285 -29.19452 -27.76844 -26.99754 -26.02164 -25.48040 -23.42161 -22.13118 -21.59038 -20.71123 -19.85136 -18.82164 -17.64738 -17.14876 -16.69017 -15.89208 -15.41081 -15.17483 -15.01365 -14.75494 -14.51590 -14.02011 -13.80200 -13.67636 -13.55523 -13.22964 -13.16650 -13.00485 -12.75062 -12.44139 -12.34022 -12.17391 -12.06620 -11.83357 -11.77381 -11.62911 -11.49296 -11.43264 -11.29056 -11.02736 -10.89046 -10.54835 -10.49171 -10.17246 -9.78098 -9.63954 -9.51843 -9.44881 -9.38994 -8.79948 -8.57744 -8.23420 -6.80601 -6.00721 -3.34853 0.60932 1.25411 1.60299 2.68678 2.94466 3.29302 3.37065 3.49561 3.58248 3.88996 4.53938 4.58637 4.71792 4.85793 4.92650 4.96986 5.03287 5.08006 5.14266 5.25495 5.27359 5.35212 5.38237 5.43942 5.56189 5.61805 5.78299 5.82195 5.84457 5.90086 5.97825 6.04248 6.09666 6.10603 6.16796 6.33896 6.42267 6.44271 6.57617 6.63584 6.69397 6.79810 6.90196 7.06533 7.73741 7.80261 8.03984 8.36585 8.53995 9.00633 9.73248 10.15591 11.14726 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014675 B = 0.003407 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.606207 B = 8215.746024 C = 9163.916493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.059 3.941 4 N -0.442 5.442 5 C 0.096 3.904 6 C -0.070 4.070 7 C 0.515 3.485 8 O -0.524 6.524 9 N -0.603 5.603 10 C 0.100 3.900 11 C 0.125 3.875 12 N -0.610 5.610 13 C 0.124 3.876 14 C -0.269 4.269 15 H 0.080 0.920 16 C 0.037 3.963 17 N -0.896 5.896 18 Si 0.854 3.146 19 H -0.262 1.262 20 H -0.305 1.305 21 H -0.275 1.275 22 C 0.130 3.870 23 C -0.164 4.164 24 C -0.174 4.174 25 C -0.261 4.261 26 S 0.098 5.902 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.006 0.994 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.262 0.738 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.084 0.916 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 -5.023 -22.160 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.221 4.221 4 N -0.155 5.155 5 C -0.037 4.037 6 C -0.112 4.112 7 C 0.301 3.699 8 O -0.399 6.399 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.002 4.002 12 N -0.334 5.334 13 C -0.021 4.021 14 C -0.398 4.398 15 H 0.097 0.903 16 C -0.163 4.163 17 N -0.537 5.537 18 Si 0.684 3.316 19 H -0.190 1.190 20 H -0.233 1.233 21 H -0.201 1.201 22 C 0.026 3.974 23 C -0.222 4.222 24 C -0.231 4.231 25 C -0.400 4.400 26 S 0.353 5.647 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.024 0.976 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.763 -5.695 -22.734 24.392 hybrid contribution 1.080 0.008 0.916 1.416 sum 7.843 -5.687 -21.818 23.872 Atomic orbital electron populations 1.21767 0.93326 1.02429 1.03073 1.20216 0.96962 0.87520 1.03990 1.27082 1.02885 1.01705 0.90401 1.65990 1.12771 1.05652 1.31100 1.19608 0.99743 0.91272 0.93042 1.20328 0.98724 0.98620 0.93544 1.20152 0.89078 0.79361 0.81339 1.90710 1.32187 1.44058 1.72975 1.48208 1.14989 1.46121 1.24433 1.22260 0.86773 1.02079 0.91327 1.21604 0.91810 0.95716 0.91079 1.44029 1.10960 1.53716 1.24740 1.21089 0.89387 0.94324 0.97324 1.18857 0.98775 1.19928 1.02201 0.90267 1.25349 0.97705 0.96620 0.96610 1.69930 1.25138 1.25119 1.33533 0.87424 0.82321 0.85669 0.76221 1.18963 1.23291 1.20065 1.21193 0.86091 0.92087 0.98033 1.22171 1.02766 0.94688 1.02604 1.22589 1.02094 1.01265 0.97172 1.26702 1.13360 1.04268 0.95624 1.83798 1.61367 1.06021 1.13510 0.91391 0.92552 0.91493 0.89889 0.88766 0.87383 0.87547 0.89843 0.90967 0.94373 0.91769 0.97623 0.93651 0.95172 0.92821 0.89851 0.90986 0.91566 0.92646 0.92476 0.91869 0.89726 0.80679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.05 -0.44 6.52 -27.89 -0.18 -0.62 16 3 C 0.06 0.72 6.64 -13.46 -0.09 0.63 16 4 N -0.44 -6.77 9.68 -8.06 -0.08 -6.85 16 5 C 0.10 1.30 5.63 -84.23 -0.47 0.83 16 6 C -0.07 -0.87 4.51 -29.04 -0.13 -1.00 16 7 C 0.51 8.71 7.64 -10.99 -0.08 8.63 16 8 O -0.52 -10.93 15.02 5.55 0.08 -10.84 16 9 N -0.60 -10.13 2.40 -166.11 -0.40 -10.53 16 10 C 0.10 2.01 5.15 -4.04 -0.02 1.99 16 11 C 0.12 2.85 4.62 -4.04 -0.02 2.84 16 12 N -0.61 -15.27 2.52 -181.12 -0.46 -15.73 16 13 C 0.12 2.73 10.70 59.85 0.64 3.37 16 14 C -0.27 -7.58 9.88 -15.06 -0.15 -7.73 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.04 1.06 5.26 -17.43 -0.09 0.97 16 17 N -0.90 -26.52 13.97 55.49 0.78 -25.74 16 18 Si 0.85 21.58 24.56 -169.99 -4.17 17.40 16 19 H -0.26 -5.93 3.92 56.52 0.22 -5.70 16 20 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 21 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 22 C 0.13 1.78 3.17 -67.93 -0.22 1.57 16 23 C -0.16 -2.09 9.17 37.16 0.34 -1.75 16 24 C -0.17 -2.77 6.97 37.16 0.26 -2.51 16 25 C -0.26 -2.84 11.07 29.12 0.32 -2.51 16 26 S 0.10 0.98 23.18 -107.50 -2.49 -1.52 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.11 1.21 7.79 -51.93 -0.40 0.81 16 33 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 34 H 0.08 1.75 6.42 -51.93 -0.33 1.42 16 35 H 0.07 1.54 7.42 -51.93 -0.39 1.15 16 36 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.06 1.50 1.00 -51.93 -0.05 1.45 16 38 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.04 0.95 8.00 -51.93 -0.42 0.53 16 40 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 41 H 0.26 7.36 8.31 -40.81 -0.34 7.02 16 42 H 0.08 0.87 5.77 -51.93 -0.30 0.57 16 43 H 0.07 1.10 6.66 -51.93 -0.35 0.76 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 1.68 4.98 -51.93 -0.26 1.43 16 49 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -34.22 393.47 -8.43 -42.65 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.09 Total: 1.55 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.47 Total: 3.68 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.16 Total: -58.85 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.17 Total: 17.40 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.22 -8.43 -42.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755815150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.168 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds