Wall clock time and date at job start Tue Mar 31 2020 23:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47010 * 2 1 4 4 N 1.29030 * 124.92107 * 90.00036 * 3 2 1 5 5 C 1.31776 * 117.12815 * 180.02562 * 4 3 2 6 6 C 1.50699 * 122.74832 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47622 * 305.02506 * 6 5 4 8 8 O 1.21286 * 119.99308 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00280 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99930 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47395 * 90.00028 * 10 9 7 12 12 N 1.46498 * 109.47395 * 179.97438 * 11 10 9 13 13 C 1.46497 * 120.00047 * 90.00309 * 12 11 10 14 14 C 1.36942 * 120.00072 * 269.99902 * 12 11 10 15 15 H 1.08000 * 119.99948 * 145.48610 * 14 12 11 16 16 C 1.38810 * 120.00068 * 325.49070 * 14 12 11 17 17 N 1.31613 * 119.99961 * 154.00592 * 16 14 12 18 18 Si 1.86797 * 119.99993 * 334.00605 * 16 14 12 19 19 H 1.48502 * 109.47175 * 95.25812 * 18 16 14 20 20 H 1.48501 * 109.47244 * 215.25776 * 18 16 14 21 21 H 1.48498 * 109.47421 * 335.26104 * 18 16 14 22 22 C 1.46505 * 120.00253 * 0.02562 * 9 7 6 23 23 C 1.52999 * 109.47307 * 119.99895 * 22 9 7 24 24 C 1.53000 * 109.46768 * 239.99819 * 22 9 7 25 25 C 1.33635 * 114.50224 * 0.23125 * 5 4 3 26 26 S 1.70982 * 124.91564 * 269.99901 * 3 2 1 27 27 H 1.09003 * 109.46994 * 299.99947 * 1 2 3 28 28 H 1.08997 * 109.47414 * 60.00153 * 1 2 3 29 29 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47678 * 239.99910 * 2 1 3 31 31 H 1.09002 * 109.46982 * 119.99763 * 2 1 3 32 32 H 1.09003 * 109.47323 * 65.03007 * 6 5 4 33 33 H 1.09002 * 109.47481 * 185.01984 * 6 5 4 34 34 H 1.09003 * 109.47465 * 209.99978 * 10 9 7 35 35 H 1.08999 * 109.47563 * 330.00219 * 10 9 7 36 36 H 1.09002 * 109.47178 * 300.00022 * 11 10 9 37 37 H 1.09005 * 109.46805 * 60.00309 * 11 10 9 38 38 H 1.09000 * 109.47505 * 85.10396 * 13 12 11 39 39 H 1.09006 * 109.46935 * 205.10627 * 13 12 11 40 40 H 1.09004 * 109.46909 * 325.10102 * 13 12 11 41 41 H 0.97012 * 119.99890 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.46866 * 359.97438 * 22 9 7 43 43 H 1.08993 * 109.47290 * 59.99499 * 23 22 9 44 44 H 1.08999 * 109.46744 * 180.02562 * 23 22 9 45 45 H 1.09007 * 109.46681 * 299.99892 * 23 22 9 46 46 H 1.09001 * 109.47268 * 59.99820 * 24 22 9 47 47 H 1.08999 * 109.47048 * 179.97438 * 24 22 9 48 48 H 1.09001 * 109.47638 * 299.99698 * 24 22 9 49 49 H 1.07996 * 126.04098 * 179.77196 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1172 1.0580 5 6 2.7131 3.3483 0.8793 6 6 3.0391 4.2720 2.0245 7 6 1.8442 4.3831 2.9362 8 8 0.8279 3.7725 2.6807 9 7 1.9051 5.1607 4.0352 10 6 0.7433 5.2690 4.9210 11 6 0.8196 4.1841 5.9972 12 7 -0.3419 4.2928 6.8834 13 6 -1.5700 3.5562 6.5751 14 6 -0.2795 5.0830 8.0001 15 1 -1.1572 5.6164 8.3340 16 6 0.9120 5.1985 8.7030 17 7 1.1524 6.2771 9.4178 18 14 2.1741 3.8232 8.6341 19 1 3.1809 4.1273 7.5857 20 1 2.8507 3.7058 9.9508 21 1 1.4943 2.5431 8.3110 22 6 3.1326 5.8986 4.3434 23 6 2.8312 7.3983 4.3776 24 6 3.6659 5.4544 5.7069 25 6 2.8361 3.7123 -0.4006 26 16 2.3585 2.3435 -1.4020 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8863 3.8738 2.5828 33 1 3.2920 5.2583 1.6352 34 1 0.7377 6.2507 5.3946 35 1 -0.1699 5.1407 4.3400 36 1 0.8251 3.2024 5.5236 37 1 1.7328 4.3125 6.5783 38 1 -1.4956 2.5436 6.9716 39 1 -2.4214 4.0628 7.0297 40 1 -1.7069 3.5142 5.4945 41 1 1.9849 6.3577 9.9093 42 1 3.8807 5.6954 3.5772 43 1 2.0832 7.6011 5.1439 44 1 3.7446 7.9472 4.6065 45 1 2.4513 7.7147 3.4062 46 1 3.8806 4.3860 5.6826 47 1 4.5794 6.0030 5.9361 48 1 2.9179 5.6572 6.4734 49 1 3.1713 4.6747 -0.7581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755815150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:08 Heat of formation + Delta-G solvation = 15.491551 kcal Electronic energy + Delta-G solvation = -28595.017738 eV Core-core repulsion = 24877.365682 eV Total energy + Delta-G solvation = -3717.652056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53158 -40.42637 -38.20667 -37.19271 -35.24145 -33.89291 -32.75491 -32.46709 -30.52820 -28.94307 -28.13434 -28.01611 -26.34288 -25.07120 -23.24178 -22.68666 -22.58485 -20.72652 -20.01385 -18.86074 -18.69420 -18.24074 -17.20455 -17.02358 -16.36620 -16.23715 -15.98645 -15.60198 -15.32443 -15.12706 -14.95707 -14.86781 -14.78505 -14.43222 -14.27512 -14.07328 -13.93936 -13.58424 -13.56631 -13.37731 -13.24818 -12.99766 -12.78613 -12.70043 -12.56481 -12.43788 -12.34444 -12.31247 -12.09405 -12.03720 -11.89097 -11.63591 -11.40552 -10.82005 -10.59636 -10.47711 -10.28484 -9.76922 -9.62551 -8.83908 -8.23149 -5.56231 -0.21197 0.48108 0.77991 1.26200 1.39584 1.50002 1.68030 1.72347 2.14448 2.39781 3.02634 3.10741 3.42738 3.59593 3.77115 3.92954 4.08685 4.11166 4.12939 4.19866 4.29107 4.30019 4.33544 4.44784 4.46454 4.56330 4.61407 4.63655 4.69451 4.73044 4.76019 4.83117 4.86920 4.92582 4.96020 4.98273 4.99933 5.03807 5.09375 5.17842 5.30143 5.36461 5.39582 5.58591 5.89082 6.11289 6.51985 6.90996 6.92072 7.25404 7.57920 8.02150 8.95912 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014675 B = 0.003407 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.606207 B = 8215.746024 C = 9163.916493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.033 3.967 4 N -0.491 5.491 5 C 0.061 3.939 6 C -0.061 4.061 7 C 0.509 3.491 8 O -0.571 6.571 9 N -0.604 5.604 10 C 0.119 3.881 11 C 0.128 3.872 12 N -0.624 5.624 13 C 0.125 3.875 14 C -0.273 4.273 15 H 0.047 0.953 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.906 3.094 19 H -0.223 1.223 20 H -0.309 1.309 21 H -0.292 1.292 22 C 0.128 3.872 23 C -0.160 4.160 24 C -0.176 4.176 25 C -0.254 4.254 26 S 0.149 5.851 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.010 0.990 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.265 0.735 42 H 0.131 0.869 43 H 0.035 0.965 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.040 0.960 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.124 -5.091 -25.337 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.245 4.245 4 N -0.205 5.205 5 C -0.071 4.071 6 C -0.103 4.103 7 C 0.298 3.702 8 O -0.449 6.449 9 N -0.338 5.338 10 C -0.007 4.007 11 C 0.002 3.998 12 N -0.349 5.349 13 C -0.020 4.020 14 C -0.402 4.402 15 H 0.065 0.935 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.735 3.265 19 H -0.148 1.148 20 H -0.238 1.238 21 H -0.218 1.218 22 C 0.026 3.974 23 C -0.217 4.217 24 C -0.234 4.234 25 C -0.393 4.393 26 S 0.405 5.595 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.148 0.852 43 H 0.054 0.946 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.111 0.889 48 H 0.059 0.941 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.524 -5.760 -25.947 28.233 hybrid contribution 0.149 0.040 1.832 1.838 sum 9.672 -5.720 -24.115 26.604 Atomic orbital electron populations 1.21725 0.93593 1.03321 1.01472 1.20339 0.96654 0.86739 1.05065 1.27480 1.03043 1.02767 0.91204 1.65987 1.14302 1.07048 1.33171 1.19827 1.01625 0.91311 0.94299 1.20405 0.96390 1.00860 0.92623 1.21043 0.89943 0.77912 0.81301 1.90690 1.34438 1.45728 1.74062 1.48275 1.14891 1.46654 1.23952 1.21680 0.88023 1.00090 0.90871 1.21598 0.90914 0.96016 0.91307 1.44165 1.12337 1.53887 1.24556 1.21137 0.88483 0.94174 0.98203 1.18720 0.97943 1.20029 1.03472 0.93524 1.25755 0.99477 0.97934 0.96494 1.70009 1.26124 1.26475 1.34829 0.86603 0.81221 0.81776 0.76926 1.14797 1.23819 1.21829 1.21493 0.85514 0.92153 0.98212 1.22140 1.03048 0.94264 1.02285 1.22572 1.02164 1.01396 0.97219 1.27150 1.11482 1.05696 0.95008 1.83558 1.59837 1.04706 1.11446 0.95050 0.91936 0.89381 0.86803 0.89672 0.85851 0.83406 0.91120 0.92661 0.95380 0.91963 0.97172 0.93189 0.93886 0.92540 0.85151 0.94568 0.88928 0.91095 0.93105 0.88940 0.94057 0.77471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.89 71.98 0.71 -1.92 16 2 C -0.05 -0.85 6.52 29.85 0.19 -0.66 16 3 C 0.03 0.78 6.64 88.52 0.59 1.37 16 4 N -0.49 -14.65 9.68 -179.41 -1.74 -16.38 16 5 C 0.06 1.53 5.63 41.52 0.23 1.76 16 6 C -0.06 -1.32 4.51 29.10 0.13 -1.19 16 7 C 0.51 16.57 7.64 87.66 0.67 17.24 16 8 O -0.57 -24.04 15.02 -3.05 -0.05 -24.08 16 9 N -0.60 -19.58 2.40 -797.85 -1.91 -21.49 16 10 C 0.12 4.88 5.15 86.38 0.44 5.33 16 11 C 0.13 5.95 4.62 86.38 0.40 6.35 16 12 N -0.62 -32.15 2.52 -726.93 -1.83 -33.98 16 13 C 0.12 5.61 10.70 127.77 1.37 6.98 16 14 C -0.27 -15.91 9.88 84.03 0.83 -15.08 16 15 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 16 C 0.00 0.08 5.26 84.86 0.45 0.53 16 17 N -0.93 -56.45 13.97 21.65 0.30 -56.15 16 18 Si 0.91 45.21 24.56 68.60 1.68 46.89 16 19 H -0.22 -9.64 3.92 99.48 0.39 -9.25 16 20 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 21 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 22 C 0.13 3.14 3.17 44.99 0.14 3.29 16 23 C -0.16 -3.64 9.17 71.98 0.66 -2.98 16 24 C -0.18 -5.19 6.97 71.98 0.50 -4.68 16 25 C -0.25 -4.65 11.07 66.77 0.74 -3.91 16 26 S 0.15 2.56 23.18 -56.49 -1.31 1.25 16 27 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.12 2.28 7.79 -2.39 -0.02 2.26 16 33 H 0.15 1.88 7.67 -2.39 -0.02 1.86 16 34 H 0.07 3.08 6.42 -2.39 -0.02 3.06 16 35 H 0.05 2.43 7.42 -2.39 -0.02 2.42 16 36 H 0.03 1.34 8.07 -2.39 -0.02 1.32 16 37 H 0.06 2.92 1.00 -2.38 0.00 2.92 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.05 2.16 8.00 -2.38 -0.02 2.14 16 40 H 0.04 1.79 8.11 -2.38 -0.02 1.78 16 41 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 42 H 0.13 2.03 5.77 -2.39 -0.01 2.02 16 43 H 0.04 1.09 6.66 -2.39 -0.02 1.07 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.05 1.54 7.58 -2.39 -0.02 1.52 16 47 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.04 1.59 4.98 -2.39 -0.01 1.58 16 49 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -79.30 393.47 3.83 -75.47 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.62 Total: 16.06 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 8.06 Total: 12.42 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -5.18 Total: -128.01 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.68 Total: 46.89 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.31 Total: 1.25 kcal Total: -79.30 3.83 -75.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755815150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.965 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds