Wall clock time and date at job start Tue Mar 31 2020 23:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47232 * 2 1 4 4 N 1.29426 * 124.80409 * 90.02823 * 3 2 1 5 5 C 1.30942 * 117.36236 * 179.97438 * 4 3 2 6 6 C 1.50704 * 122.90557 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19414 * 0.02562 * 5 4 3 8 8 C 1.46686 * 126.13652 * 180.02562 * 7 5 4 9 9 O 1.21693 * 119.99585 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00342 * 179.72317 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27605 * 10 8 7 12 12 H 1.08999 * 109.46902 * 324.99605 * 11 10 8 13 13 C 1.53001 * 109.46711 * 204.99467 * 11 10 8 14 14 N 1.46507 * 109.46859 * 55.00199 * 13 11 10 15 15 C 1.36936 * 119.99340 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00507 * 0.02562 * 15 14 13 17 17 C 1.38823 * 119.99415 * 179.97438 * 15 14 13 18 18 N 1.31613 * 119.99717 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00201 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47322 * 89.99773 * 19 17 15 21 21 H 1.48498 * 109.47302 * 210.00196 * 19 17 15 22 22 H 1.48506 * 109.46880 * 330.00101 * 19 17 15 23 23 C 1.52995 * 109.47009 * 84.99752 * 11 10 8 24 24 C 1.52995 * 109.47424 * 59.99993 * 23 11 10 25 25 C 1.53000 * 109.46952 * 179.97438 * 23 11 10 26 26 C 1.53001 * 109.47151 * 299.99445 * 23 11 10 27 27 S 1.70951 * 124.80271 * 270.33653 * 3 2 1 28 28 H 1.09004 * 109.47049 * 59.99560 * 1 2 3 29 29 H 1.08999 * 109.47696 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46918 * 300.00557 * 1 2 3 31 31 H 1.08994 * 109.46762 * 239.99758 * 2 1 3 32 32 H 1.08999 * 109.46609 * 120.00282 * 2 1 3 33 33 H 1.08996 * 109.47269 * 269.96350 * 6 5 4 34 34 H 1.09004 * 109.46875 * 29.96841 * 6 5 4 35 35 H 1.09003 * 109.47236 * 149.96359 * 6 5 4 36 36 H 0.97000 * 119.99736 * 0.26879 * 10 8 7 37 37 H 1.09005 * 109.46828 * 174.99372 * 13 11 10 38 38 H 1.08991 * 109.47270 * 294.99956 * 13 11 10 39 39 H 0.97001 * 120.00279 * 359.97438 * 14 13 11 40 40 H 0.97003 * 120.00097 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47411 * 59.99622 * 24 23 11 42 42 H 1.09002 * 109.47406 * 179.97438 * 24 23 11 43 43 H 1.08998 * 109.47245 * 299.99616 * 24 23 11 44 44 H 1.08998 * 109.47384 * 59.99739 * 25 23 11 45 45 H 1.08995 * 109.47655 * 179.97438 * 25 23 11 46 46 H 1.09006 * 109.47451 * 300.00315 * 25 23 11 47 47 H 1.08998 * 109.46912 * 60.00755 * 26 23 11 48 48 H 1.09002 * 109.46865 * 180.02562 * 26 23 11 49 49 H 1.08998 * 109.47169 * 300.00251 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2791 2.1171 1.0627 5 6 2.7123 3.3411 0.8931 6 6 3.0387 4.2605 2.0417 7 6 2.8420 3.7099 -0.4059 8 6 3.3040 5.0142 -0.8927 9 8 3.6128 5.8848 -0.1004 10 7 3.3913 5.2468 -2.2174 11 6 3.8585 6.5475 -2.7035 12 1 3.5114 7.3325 -2.0316 13 6 3.3043 6.7960 -4.1078 14 7 1.8448 6.6704 -4.0861 15 6 1.1249 6.8525 -5.2366 16 1 1.6329 7.0883 -6.1600 17 6 -0.2580 6.7328 -5.2162 18 7 -0.9500 6.9074 -6.3220 19 14 -1.1367 6.3242 -3.6193 20 1 -1.4834 7.5816 -2.9092 21 1 -2.3780 5.5656 -3.9173 22 1 -0.2471 5.5006 -2.7616 23 6 5.3877 6.5552 -2.7499 24 6 5.8750 5.4534 -3.6929 25 6 5.8756 7.9134 -3.2582 26 6 5.9419 6.3067 -1.3456 27 16 2.3498 2.3434 -1.4037 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 1.8932 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.1489 4.8257 2.3189 34 1 3.3752 3.6711 2.8946 35 1 3.8282 4.9498 1.7423 36 1 3.1449 4.5530 -2.8489 37 1 3.5777 7.7996 -4.4339 38 1 3.7219 6.0633 -4.7981 39 1 1.3885 6.4582 -3.2568 40 1 -1.9163 6.8242 -6.3078 41 1 5.4802 5.6305 -4.6934 42 1 6.9645 5.4592 -3.7264 43 1 5.5274 4.4857 -3.3313 44 1 5.5285 8.6987 -2.5868 45 1 6.9651 7.9192 -3.2909 46 1 5.4808 8.0902 -4.2588 47 1 5.5944 5.3390 -0.9840 48 1 7.0314 6.3127 -1.3787 49 1 5.5948 7.0917 -0.6739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755833517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:50 Heat of formation + Delta-G solvation = -16.586443 kcal Electronic energy + Delta-G solvation = -28628.044896 eV Core-core repulsion = 24909.001833 eV Total energy + Delta-G solvation = -3719.043062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74810 -40.82278 -38.69978 -36.36846 -35.27946 -34.77467 -33.37869 -31.92238 -30.22967 -29.10387 -28.17678 -27.71992 -26.50377 -25.49283 -23.48691 -22.92328 -22.62000 -20.76280 -20.16264 -19.41095 -18.98727 -17.85091 -17.16321 -17.14223 -16.57347 -16.14863 -16.05117 -15.66758 -15.34421 -15.08907 -14.87121 -14.82068 -14.59565 -14.49019 -14.48303 -14.00474 -13.86828 -13.49761 -13.37649 -13.18547 -13.00676 -12.97007 -12.82938 -12.63538 -12.55707 -12.43236 -12.40612 -12.19271 -12.13469 -12.07140 -11.85804 -11.65751 -11.33024 -11.15598 -11.01959 -10.77282 -10.63119 -10.07869 -9.80312 -9.32602 -8.05760 -5.38177 -0.87778 0.07143 0.46878 1.29477 1.29921 1.33369 1.38555 1.99564 2.04801 2.41926 2.88793 3.26844 3.42049 3.64395 3.73794 3.80895 3.96708 3.99391 4.04179 4.17632 4.23002 4.26251 4.40441 4.51823 4.58467 4.65222 4.74718 4.80729 4.81465 4.83423 4.84776 4.93317 4.95045 5.00000 5.03780 5.06573 5.10609 5.20656 5.23525 5.27390 5.31726 5.37696 5.53015 5.56683 5.74749 6.17931 6.31714 6.51203 7.02061 7.03912 7.79278 7.97008 9.15580 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008089 B = 0.005203 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.471282 B = 5379.991275 C = 7680.725801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.073 3.927 4 N -0.497 5.497 5 C 0.143 3.857 6 C -0.084 4.084 7 C -0.329 4.329 8 C 0.596 3.404 9 O -0.541 6.541 10 N -0.706 5.706 11 C 0.154 3.846 12 H 0.072 0.928 13 C 0.145 3.855 14 N -0.758 5.758 15 C -0.226 4.226 16 H 0.067 0.933 17 C -0.052 4.052 18 N -0.977 5.977 19 Si 0.939 3.061 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.261 1.261 23 C -0.070 4.070 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.121 4.121 27 S 0.180 5.820 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.402 0.598 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.361 0.639 40 H 0.258 0.742 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.038 0.962 48 H 0.062 0.938 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.780 -13.570 13.672 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.203 4.203 4 N -0.212 5.212 5 C 0.004 3.996 6 C -0.143 4.143 7 C -0.453 4.453 8 C 0.383 3.617 9 O -0.421 6.421 10 N -0.356 5.356 11 C 0.050 3.950 12 H 0.090 0.910 13 C 0.019 3.981 14 N -0.403 5.403 15 C -0.357 4.357 16 H 0.085 0.915 17 C -0.244 4.244 18 N -0.628 5.628 19 Si 0.768 3.232 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.186 1.186 23 C -0.071 4.071 24 C -0.197 4.197 25 C -0.197 4.197 26 C -0.178 4.178 27 S 0.438 5.562 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.237 0.763 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.194 0.806 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.819 -13.364 13.360 22.834 hybrid contribution -1.131 0.365 0.994 1.549 sum 11.689 -12.999 14.354 22.619 Atomic orbital electron populations 1.21808 0.92724 1.04154 1.01965 1.20568 0.97150 0.85006 1.06429 1.28152 0.98714 1.02817 0.90568 1.66150 1.17150 1.05914 1.31997 1.20921 0.93809 0.90960 0.93918 1.20624 1.03314 0.96797 0.93555 1.25490 1.20367 1.01388 0.98011 1.16730 0.77093 0.85228 0.82650 1.90751 1.50789 1.45338 1.55257 1.45885 1.66782 1.16986 1.05978 1.21286 0.94535 0.84288 0.94917 0.90962 1.21260 0.82455 1.00132 0.94245 1.42740 1.03149 1.86767 1.07684 1.19029 0.89530 1.38329 0.88823 0.91528 1.25283 0.97028 1.02903 0.99193 1.69838 1.06429 1.58597 1.27940 0.85660 0.78559 0.78095 0.80927 1.21429 1.21741 1.18585 1.20853 0.92056 0.97477 0.96734 1.21899 1.01695 0.97260 0.98842 1.21889 1.01937 0.94721 1.01200 1.21784 1.00175 1.00997 0.94884 1.84001 1.57878 1.03288 1.10993 0.92929 0.88599 0.93153 0.86830 0.87120 0.90235 0.89411 0.89029 0.76278 0.93237 0.93369 0.80581 0.93317 0.92098 0.91073 0.93248 0.92886 0.90680 0.92105 0.94299 0.91877 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.89 71.98 0.71 -1.26 16 2 C -0.05 -0.68 6.51 29.85 0.19 -0.49 16 3 C 0.07 1.57 6.64 88.46 0.59 2.16 16 4 N -0.50 -12.91 10.50 -178.29 -1.87 -14.79 16 5 C 0.14 3.99 6.79 42.09 0.29 4.27 16 6 C -0.08 -2.09 9.69 71.24 0.69 -1.40 16 7 C -0.33 -9.53 6.48 23.88 0.15 -9.38 16 8 C 0.60 18.85 6.13 86.45 0.53 19.38 16 9 O -0.54 -18.58 11.39 -4.33 -0.05 -18.63 16 10 N -0.71 -21.45 3.64 -446.49 -1.62 -23.07 16 11 C 0.15 4.71 1.69 44.99 0.08 4.79 16 12 H 0.07 2.50 7.58 -2.39 -0.02 2.48 16 13 C 0.15 5.15 5.10 86.38 0.44 5.59 16 14 N -0.76 -34.44 5.24 -343.43 -1.80 -36.24 16 15 C -0.23 -12.51 10.47 84.04 0.88 -11.63 16 16 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 17 C -0.05 -3.02 5.50 84.87 0.47 -2.55 16 18 N -0.98 -61.59 13.97 21.65 0.30 -61.28 16 19 Si 0.94 46.14 27.74 68.60 1.90 48.04 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 21 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.26 -11.87 6.52 99.48 0.65 -11.22 16 23 C -0.07 -1.69 0.62 -52.18 -0.03 -1.72 16 24 C -0.14 -3.02 7.97 71.98 0.57 -2.45 16 25 C -0.14 -3.06 8.12 71.98 0.58 -2.47 16 26 C -0.12 -2.99 7.00 71.98 0.50 -2.49 16 27 S 0.18 4.24 22.31 -56.49 -1.26 2.98 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.46 6.01 -2.39 -0.01 2.44 16 36 H 0.40 11.90 7.79 -92.71 -0.72 11.18 16 37 H 0.05 1.77 6.71 -2.38 -0.02 1.76 16 38 H 0.05 1.65 6.17 -2.39 -0.01 1.64 16 39 H 0.36 16.51 5.20 -92.71 -0.48 16.03 16 40 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.06 1.37 6.32 -2.39 -0.02 1.35 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.09 7.60 -2.39 -0.02 1.07 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.06 1.37 6.54 -2.38 -0.02 1.36 16 47 H 0.04 1.06 5.78 -2.39 -0.01 1.04 16 48 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 1.34 7.53 -2.39 -0.02 1.32 16 Total: -1.00 -69.10 393.26 1.96 -67.14 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.29 Total: 35.50 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.65 Total: 0.35 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -4.99 Total: -135.39 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.04 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.26 Total: 2.98 kcal Total: -69.10 1.96 -67.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755833517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.554 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds