Wall clock time and date at job start Tue Mar 31 2020 23:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47381 * 2 1 4 4 N 1.29424 * 124.80750 * 90.02366 * 3 2 1 5 5 C 1.30939 * 117.36882 * 180.02562 * 4 3 2 6 6 C 1.50703 * 122.90753 * 180.02562 * 5 4 3 7 7 C 1.35665 * 114.18955 * 359.97438 * 5 4 3 8 8 C 1.46682 * 126.13248 * 180.02562 * 7 5 4 9 9 O 1.21693 * 119.99805 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00182 * 180.02562 * 8 7 5 11 11 C 1.46498 * 119.99828 * 180.27909 * 10 8 7 12 12 H 1.09004 * 109.47372 * 34.71852 * 11 10 8 13 13 C 1.52999 * 109.46963 * 154.72290 * 11 10 8 14 14 N 1.46500 * 109.47226 * 304.99288 * 13 11 10 15 15 C 1.36937 * 119.99856 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00314 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99459 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99470 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00331 * 359.97438 * 17 15 14 20 20 H 1.48510 * 109.46867 * 90.00273 * 19 17 15 21 21 H 1.48496 * 109.47349 * 209.99962 * 19 17 15 22 22 H 1.48495 * 109.47212 * 330.00740 * 19 17 15 23 23 C 1.52997 * 109.47036 * 274.72131 * 11 10 8 24 24 C 1.53003 * 109.47435 * 60.00123 * 23 11 10 25 25 C 1.53003 * 109.47241 * 180.02562 * 23 11 10 26 26 C 1.53004 * 109.47278 * 300.00073 * 23 11 10 27 27 S 1.70957 * 124.80416 * 270.34393 * 3 2 1 28 28 H 1.09003 * 109.47360 * 60.00384 * 1 2 3 29 29 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47128 * 300.00133 * 1 2 3 31 31 H 1.09006 * 109.47329 * 240.00053 * 2 1 3 32 32 H 1.09000 * 109.47272 * 120.00141 * 2 1 3 33 33 H 1.08994 * 109.47223 * 269.95851 * 6 5 4 34 34 H 1.08999 * 109.46632 * 29.96215 * 6 5 4 35 35 H 1.09000 * 109.47074 * 149.95650 * 6 5 4 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.47415 * 64.99597 * 13 11 10 38 38 H 1.09008 * 109.47087 * 184.99936 * 13 11 10 39 39 H 0.96998 * 120.00120 * 0.02562 * 14 13 11 40 40 H 0.97006 * 119.99889 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.46678 * 59.99591 * 24 23 11 42 42 H 1.08997 * 109.47244 * 180.02562 * 24 23 11 43 43 H 1.09003 * 109.47092 * 300.00256 * 24 23 11 44 44 H 1.08997 * 109.47066 * 59.99753 * 25 23 11 45 45 H 1.09000 * 109.47191 * 180.02562 * 25 23 11 46 46 H 1.08995 * 109.46928 * 299.99922 * 25 23 11 47 47 H 1.09003 * 109.46809 * 60.00014 * 26 23 11 48 48 H 1.09000 * 109.47238 * 179.97438 * 26 23 11 49 49 H 1.08997 * 109.47037 * 300.00252 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2791 2.1172 1.0627 5 6 2.7113 3.3415 0.8931 6 6 3.0375 4.2610 2.0417 7 6 2.8413 3.7102 -0.4059 8 6 3.3024 5.0148 -0.8927 9 8 3.6110 5.8854 -0.1004 10 7 3.3843 5.2493 -2.2174 11 6 3.8507 6.5503 -2.7035 12 1 4.6132 6.9384 -2.0282 13 6 4.4445 6.3883 -4.1042 14 7 5.4931 5.3656 -4.0748 15 6 6.1708 5.0469 -5.2212 16 1 5.9326 5.5496 -6.1469 17 6 7.1640 4.0775 -5.1934 18 7 7.8158 3.7714 -6.2952 19 14 7.5765 3.2084 -3.5922 20 1 6.7331 1.9936 -3.4568 21 1 9.0093 2.8183 -3.5955 22 1 7.3148 4.1223 -2.4514 23 6 2.6735 7.5261 -2.7583 24 6 2.0797 7.6881 -1.3576 25 6 3.1605 8.8846 -3.2666 26 6 1.6031 6.9813 -3.7062 27 16 2.3497 2.3436 -1.4037 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1474 4.8255 2.3193 34 1 3.3747 3.6716 2.8944 35 1 3.8265 4.9508 1.7421 36 1 3.1386 4.5552 -2.8489 37 1 3.6607 6.0851 -4.7983 38 1 4.8713 7.3370 -4.4299 39 1 5.7068 4.9138 -3.2435 40 1 8.5097 3.0937 -6.2759 41 1 2.8423 8.0762 -0.6823 42 1 1.2408 8.3829 -1.3967 43 1 1.7327 6.7202 -0.9958 44 1 3.5833 8.7689 -4.2645 45 1 2.3219 9.5799 -3.3052 46 1 3.9232 9.2729 -2.5916 47 1 1.2561 6.0134 -3.3444 48 1 0.7643 7.6763 -3.7448 49 1 2.0262 6.8659 -4.7040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755833518.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:53 Heat of formation + Delta-G solvation = 3.587164 kcal Electronic energy + Delta-G solvation = -28601.105266 eV Core-core repulsion = 24882.936997 eV Total energy + Delta-G solvation = -3718.168269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.61464 -39.72821 -37.48852 -34.64357 -34.51305 -33.43742 -31.38554 -30.99783 -28.89469 -27.83816 -27.20621 -26.61386 -25.69849 -23.78233 -22.20747 -21.93570 -21.24430 -19.61002 -18.74796 -18.02888 -17.68991 -16.65216 -15.98378 -15.86877 -15.34504 -14.86884 -14.62405 -14.46361 -14.21632 -13.98320 -13.73822 -13.60689 -13.51654 -13.17545 -13.05863 -12.85172 -12.60809 -12.33541 -12.16989 -12.04097 -11.98424 -11.90501 -11.59077 -11.52339 -11.45640 -11.41674 -11.25959 -10.90545 -10.81118 -10.61028 -10.35122 -10.05971 -10.04069 -9.70516 -9.65364 -9.59084 -8.96859 -8.92077 -8.72654 -7.29931 -5.82553 -3.18535 0.13737 1.05027 1.46743 2.34626 3.16823 3.23301 3.32564 3.38448 3.41721 3.76413 4.54136 4.54726 4.75297 4.77668 4.79909 4.83337 4.94059 5.01393 5.10747 5.22599 5.39269 5.45193 5.46126 5.54414 5.56064 5.60630 5.68089 5.70059 5.74778 5.79019 5.81573 5.82863 5.82939 5.95956 6.04095 6.07354 6.21057 6.23139 6.33079 6.34820 6.39531 6.51093 6.61624 6.77546 7.45412 7.60079 7.92588 8.23349 8.36191 9.14607 9.87152 10.06253 11.35590 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008433 B = 0.004898 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.350858 B = 5715.041823 C = 7663.768283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C 0.061 3.939 4 N -0.478 5.478 5 C 0.146 3.854 6 C -0.088 4.088 7 C -0.298 4.298 8 C 0.597 3.403 9 O -0.522 6.522 10 N -0.707 5.707 11 C 0.146 3.854 12 H 0.091 0.909 13 C 0.145 3.855 14 N -0.755 5.755 15 C -0.246 4.246 16 H 0.092 0.908 17 C 0.010 3.990 18 N -0.931 5.931 19 Si 0.876 3.124 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.075 4.075 24 C -0.130 4.130 25 C -0.141 4.141 26 C -0.143 4.143 27 S 0.168 5.832 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.401 0.599 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.309 -1.434 12.415 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.214 4.214 4 N -0.193 5.193 5 C 0.008 3.992 6 C -0.146 4.146 7 C -0.422 4.422 8 C 0.382 3.618 9 O -0.401 6.401 10 N -0.357 5.357 11 C 0.041 3.959 12 H 0.109 0.891 13 C 0.018 3.982 14 N -0.401 5.401 15 C -0.375 4.375 16 H 0.110 0.890 17 C -0.186 4.186 18 N -0.579 5.579 19 Si 0.706 3.294 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.077 4.077 24 C -0.187 4.187 25 C -0.199 4.199 26 C -0.200 4.200 27 S 0.426 5.574 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.236 0.764 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.163 -1.270 12.091 21.032 hybrid contribution 0.561 -0.647 1.389 1.632 sum -16.602 -1.917 13.480 21.471 Atomic orbital electron populations 1.21775 0.93156 1.02782 1.02798 1.20318 0.96936 0.87203 1.04754 1.27409 1.00844 1.01830 0.91329 1.66065 1.16038 1.05887 1.31323 1.20642 0.94452 0.90446 0.93646 1.20646 1.03564 0.96997 0.93433 1.25556 1.18548 1.00863 0.97231 1.16585 0.77668 0.84682 0.82847 1.90767 1.49846 1.44590 1.54926 1.45921 1.66940 1.16909 1.05915 1.21425 0.95314 0.81882 0.97272 0.89119 1.21102 0.91256 0.93635 0.92221 1.42724 1.42648 1.45624 1.09149 1.19033 1.12904 1.17247 0.88347 0.89046 1.24627 0.98471 0.99254 0.96297 1.69693 1.26941 1.35342 1.25903 0.86675 0.77937 0.80115 0.84652 1.20948 1.21541 1.20377 1.20890 0.95286 0.95284 0.96244 1.21888 1.00205 1.01173 0.95460 1.21892 1.00977 0.95320 1.01700 1.21930 0.97972 1.00517 0.99607 1.84108 1.57842 1.04355 1.11072 0.92219 0.91133 0.91887 0.89180 0.88447 0.90281 0.90973 0.88016 0.76436 0.94440 0.93587 0.80548 0.93001 0.91875 0.93793 0.93067 0.91715 0.92717 0.92488 0.93047 0.92957 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.05 -0.42 6.51 -27.89 -0.18 -0.60 16 3 C 0.06 0.72 6.64 -13.29 -0.09 0.63 16 4 N -0.48 -6.55 10.50 -7.70 -0.08 -6.63 16 5 C 0.15 2.10 6.79 -83.89 -0.57 1.53 16 6 C -0.09 -1.11 9.70 36.01 0.35 -0.76 16 7 C -0.30 -4.40 6.48 -37.09 -0.24 -4.64 16 8 C 0.60 9.51 6.14 -12.85 -0.08 9.43 16 9 O -0.52 -8.96 11.40 5.20 0.06 -8.90 16 10 N -0.71 -10.92 3.63 -55.11 -0.20 -11.12 16 11 C 0.15 2.28 1.69 -67.93 -0.11 2.16 16 12 H 0.09 1.59 7.57 -51.93 -0.39 1.19 16 13 C 0.15 2.64 5.10 -4.04 -0.02 2.62 16 14 N -0.76 -17.41 5.24 -59.91 -0.31 -17.73 16 15 C -0.25 -6.77 10.47 -15.06 -0.16 -6.93 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 18 N -0.93 -28.86 13.97 55.49 0.78 -28.08 16 19 Si 0.88 22.25 27.73 -169.99 -4.71 17.54 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 23 C -0.08 -0.97 0.62 -154.50 -0.10 -1.07 16 24 C -0.13 -1.70 7.00 37.16 0.26 -1.44 16 25 C -0.14 -1.67 8.12 37.16 0.30 -1.37 16 26 C -0.14 -1.70 7.97 37.16 0.30 -1.40 16 27 S 0.17 2.09 22.31 -107.50 -2.40 -0.31 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.43 6.01 -51.93 -0.31 1.11 16 36 H 0.40 6.04 7.79 -40.82 -0.32 5.72 16 37 H 0.04 0.67 6.17 -51.93 -0.32 0.34 16 38 H 0.05 0.84 6.71 -51.92 -0.35 0.50 16 39 H 0.36 8.46 5.20 -40.82 -0.21 8.24 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.72 5.79 -51.93 -0.30 0.42 16 44 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.61 7.60 -51.93 -0.39 0.22 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -32.11 393.30 -8.91 -41.03 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.90 Total: 10.57 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.07 Total: -2.29 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: 0.18 Total: -63.56 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.06 Total: -8.90 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.40 Total: -0.31 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.11 -8.91 -41.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755833518.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.613 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds