Wall clock time and date at job start Tue Mar 31 2020 23:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47320 * 2 1 4 4 C 1.46501 * 119.99916 * 270.00476 * 3 2 1 5 5 C 1.50699 * 109.47100 * 269.99404 * 4 3 2 6 6 H 1.07997 * 120.00101 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00030 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00217 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47347 * 89.99497 * 9 7 5 11 11 H 1.48494 * 109.47474 * 209.99821 * 9 7 5 12 12 H 1.48501 * 109.47067 * 330.00130 * 9 7 5 13 13 C 1.34775 * 120.00115 * 90.00065 * 3 2 1 14 14 O 1.21279 * 120.00107 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99929 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47041 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99498 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47302 * 299.99832 * 17 16 15 19 19 C 1.52992 * 109.47164 * 60.00409 * 17 16 15 20 20 C 1.50699 * 109.46750 * 180.02562 * 17 16 15 21 21 N 1.29028 * 124.91991 * 179.97438 * 20 17 16 22 22 C 1.31778 * 117.12837 * 179.97438 * 21 20 17 23 23 C 1.50702 * 122.74764 * 180.02562 * 22 21 20 24 24 C 1.33636 * 114.50124 * 359.97438 * 22 21 20 25 25 C 1.50697 * 126.03648 * 180.02562 * 24 22 21 26 26 S 1.70982 * 124.91863 * 359.69620 * 20 17 16 27 27 H 1.08995 * 109.47228 * 59.99874 * 1 2 3 28 28 H 1.09000 * 109.46906 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46961 * 299.99955 * 1 2 3 30 30 H 1.09003 * 109.46940 * 240.00505 * 2 1 3 31 31 H 1.09000 * 109.47669 * 120.00282 * 2 1 3 32 32 H 1.09002 * 109.47577 * 29.99624 * 4 3 2 33 33 H 1.09006 * 109.47268 * 149.99946 * 4 3 2 34 34 H 0.96997 * 120.00038 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.46962 * 59.99915 * 15 13 3 36 36 H 1.08997 * 109.46924 * 300.00070 * 15 13 3 37 37 H 1.00904 * 110.99913 * 56.04984 * 16 15 13 38 38 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.46832 * 60.00356 * 18 17 16 40 40 H 1.09004 * 109.47261 * 300.00337 * 18 17 16 41 41 H 1.09001 * 109.47066 * 299.99703 * 19 17 16 42 42 H 1.08996 * 109.47747 * 59.99369 * 19 17 16 43 43 H 1.09002 * 109.47103 * 179.97438 * 19 17 16 44 44 H 1.08998 * 109.46986 * 89.97418 * 23 22 21 45 45 H 1.09001 * 109.46725 * 209.97412 * 23 22 21 46 46 H 1.09003 * 109.47314 * 329.97289 * 23 22 21 47 47 H 1.08997 * 109.47668 * 90.00335 * 25 24 22 48 48 H 1.09007 * 109.46999 * 210.00085 * 25 24 22 49 49 H 1.08994 * 109.47238 * 329.99893 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1490 2.3897 -2.8781 8 7 5.3909 2.1827 -3.2580 9 14 3.0126 3.4351 -3.9293 10 1 3.1160 4.8554 -3.5082 11 1 3.4055 3.3120 -5.3560 12 1 1.6129 2.9692 -3.7592 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3111 2.2058 3.5888 17 6 2.0788 1.5450 4.8802 18 6 0.6088 1.1340 4.9856 19 6 2.9647 0.3020 4.9837 20 6 2.4152 2.4968 5.9991 21 7 2.3186 2.2226 7.2562 22 6 2.6547 3.1721 8.1059 23 6 2.5910 2.9887 9.6003 24 6 3.0577 4.3106 7.5338 25 6 3.4996 5.5575 8.2555 26 16 2.9865 4.0943 5.7866 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 5.7169 2.5732 -4.0839 35 1 2.6229 0.4187 2.5298 36 1 0.9446 1.0114 2.5302 37 1 1.7860 3.0648 3.5221 38 1 0.4363 0.6441 5.9439 39 1 0.3651 0.4457 4.1763 40 1 -0.0223 2.0197 4.9118 41 1 2.7210 -0.3863 4.1744 42 1 4.0119 0.5947 4.9086 43 1 2.7926 -0.1880 5.9421 44 1 3.5444 2.6017 9.9598 45 1 2.3857 3.9479 10.0756 46 1 1.7967 2.2838 9.8464 47 1 4.5749 5.5151 8.4291 48 1 3.2638 6.4316 7.6484 49 1 2.9798 5.6278 9.2109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072865857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:28 Heat of formation + Delta-G solvation = 9.033981 kcal Electronic energy + Delta-G solvation = -27681.575144 eV Core-core repulsion = 23963.643067 eV Total energy + Delta-G solvation = -3717.932077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27336 -39.37002 -37.66330 -35.37583 -33.39984 -32.69885 -31.19937 -30.32191 -29.78154 -28.25215 -27.51222 -26.57228 -25.47712 -24.17863 -22.99754 -22.05791 -20.11137 -18.75177 -18.53892 -17.93300 -16.97441 -16.75635 -16.05867 -15.39293 -15.22391 -15.14570 -14.65591 -14.29005 -14.11042 -13.84886 -13.64548 -13.50167 -13.25295 -13.21135 -13.09611 -12.91537 -12.85739 -12.50100 -12.37671 -12.24919 -12.21947 -11.98584 -11.84676 -11.71120 -11.48164 -11.41900 -11.32770 -11.02388 -10.97508 -10.70569 -10.49493 -10.14988 -9.63634 -9.52467 -9.22520 -9.03396 -8.68061 -8.57235 -8.48447 -7.71786 -6.06799 -4.05295 0.63687 1.30636 1.79504 2.67025 3.29105 3.31134 3.35475 3.37202 3.42641 3.90438 4.27640 4.40830 4.63563 4.75580 4.80591 4.86949 4.89945 4.98734 5.14652 5.17720 5.24999 5.25241 5.27670 5.39084 5.41326 5.47533 5.51669 5.54535 5.57142 5.59741 5.66900 5.71440 5.73634 5.77813 5.91552 5.94378 6.12327 6.12675 6.17003 6.36170 6.63877 6.81195 6.96509 7.17393 7.35722 7.62911 7.68520 8.25557 8.48931 8.95070 9.00711 9.53482 11.06686 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.002714 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.409026 B =10314.534557 C =11327.070219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.507 3.493 14 O -0.526 6.526 15 C 0.040 3.960 16 N -0.664 5.664 17 C 0.190 3.810 18 C -0.173 4.173 19 C -0.132 4.132 20 C 0.056 3.944 21 N -0.470 5.470 22 C 0.056 3.944 23 C -0.075 4.075 24 C -0.250 4.250 25 C -0.072 4.072 26 S 0.175 5.825 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.350 0.650 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 -1.638 22.762 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.326 5.326 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.402 6.402 15 C -0.091 4.091 16 N -0.297 5.297 17 C 0.095 3.905 18 C -0.233 4.233 19 C -0.191 4.191 20 C -0.222 4.222 21 N -0.184 5.184 22 C -0.076 4.076 23 C -0.134 4.134 24 C -0.371 4.371 25 C -0.131 4.131 26 S 0.433 5.567 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.171 0.829 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.335 -0.995 21.820 23.754 hybrid contribution -1.393 0.304 0.146 1.433 sum -10.729 -0.691 21.966 24.456 Atomic orbital electron populations 1.22238 0.96838 1.01586 1.02150 1.21443 0.93301 0.83952 1.03157 1.47918 1.64381 1.13368 1.06945 1.19632 0.97309 0.93331 0.80018 1.21329 0.95336 1.32833 1.07030 0.90734 1.24860 0.94980 0.95826 0.97377 1.69899 1.15137 1.45026 1.23553 0.86856 0.81432 0.81646 0.79762 1.19932 1.21121 1.19136 1.20144 0.78663 0.87106 0.84799 1.90681 1.44609 1.18016 1.86887 1.21985 1.00631 0.96925 0.89586 1.60235 1.63015 1.07055 0.99444 1.19292 0.95001 0.91382 0.84799 1.22499 0.95098 1.02179 1.03565 1.21856 0.99957 0.94822 1.02454 1.26663 1.02827 0.97764 0.94931 1.65965 1.18871 1.33015 1.00552 1.20065 1.01563 0.88580 0.97408 1.20312 1.02915 1.02584 0.87598 1.25917 1.11893 1.01877 0.97443 1.20198 1.01497 0.92121 0.99292 1.84514 1.59556 1.10563 1.02020 0.92188 0.91945 0.93147 0.89636 0.91479 0.95325 0.94659 0.92597 0.87783 0.92077 0.82916 0.90768 0.91138 0.92504 0.91442 0.91420 0.91195 0.90911 0.90957 0.90900 0.90705 0.91225 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.56 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -11.79 2.46 -175.05 -0.43 -12.22 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.23 16 5 C -0.53 -15.10 9.94 -34.44 -0.34 -15.44 16 6 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 9 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 9.99 7.71 -10.98 -0.08 9.91 16 14 O -0.53 -12.70 15.78 5.56 0.09 -12.62 16 15 C 0.04 0.57 3.93 -4.97 -0.02 0.55 16 16 N -0.66 -9.39 5.19 -102.40 -0.53 -9.92 16 17 C 0.19 2.26 0.93 -132.76 -0.12 2.14 16 18 C -0.17 -1.74 8.21 37.16 0.30 -1.44 16 19 C -0.13 -1.48 8.21 37.15 0.31 -1.18 16 20 C 0.06 0.72 5.82 -13.46 -0.08 0.64 16 21 N -0.47 -6.06 10.51 -8.06 -0.08 -6.14 16 22 C 0.06 0.64 6.74 -84.23 -0.57 0.08 16 23 C -0.07 -0.60 10.06 36.01 0.36 -0.24 16 24 C -0.25 -2.74 6.59 -35.92 -0.24 -2.97 16 25 C -0.07 -0.55 10.10 36.00 0.36 -0.19 16 26 S 0.18 2.21 21.94 -107.50 -2.36 -0.14 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.56 7.22 -51.93 -0.38 0.18 16 30 H 0.09 1.34 8.07 -51.93 -0.42 0.93 16 31 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.10 1.36 5.56 -51.93 -0.29 1.07 16 36 H 0.06 0.70 5.35 -51.93 -0.28 0.42 16 37 H 0.35 5.12 7.85 -39.29 -0.31 4.81 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.62 6.40 -51.93 -0.33 0.29 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.66 6.40 -51.93 -0.33 0.33 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.44 6.72 -51.93 -0.35 0.09 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.45 6.76 -51.93 -0.35 0.10 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -34.85 400.72 -8.97 -43.82 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.91 Total: 2.27 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.12 Total: -0.99 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.27 Total: -55.31 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.36 Total: -0.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.85 -8.97 -43.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072865857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.852 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds