Wall clock time and date at job start Tue Mar 31 2020 23:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47320 * 2 1 4 4 C 1.46501 * 119.99916 * 270.00476 * 3 2 1 5 5 C 1.50699 * 109.47100 * 269.99404 * 4 3 2 6 6 H 1.07997 * 120.00101 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00030 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00217 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47347 * 89.99497 * 9 7 5 11 11 H 1.48494 * 109.47474 * 209.99821 * 9 7 5 12 12 H 1.48501 * 109.47067 * 330.00130 * 9 7 5 13 13 C 1.34775 * 120.00115 * 90.00065 * 3 2 1 14 14 O 1.21279 * 120.00107 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99929 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47041 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99498 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47302 * 299.99832 * 17 16 15 19 19 C 1.52992 * 109.47164 * 60.00409 * 17 16 15 20 20 C 1.50699 * 109.46750 * 180.02562 * 17 16 15 21 21 N 1.29028 * 124.91991 * 179.97438 * 20 17 16 22 22 C 1.31778 * 117.12837 * 179.97438 * 21 20 17 23 23 C 1.50702 * 122.74764 * 180.02562 * 22 21 20 24 24 C 1.33636 * 114.50124 * 359.97438 * 22 21 20 25 25 C 1.50697 * 126.03648 * 180.02562 * 24 22 21 26 26 S 1.70982 * 124.91863 * 359.69620 * 20 17 16 27 27 H 1.08995 * 109.47228 * 59.99874 * 1 2 3 28 28 H 1.09000 * 109.46906 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46961 * 299.99955 * 1 2 3 30 30 H 1.09003 * 109.46940 * 240.00505 * 2 1 3 31 31 H 1.09000 * 109.47669 * 120.00282 * 2 1 3 32 32 H 1.09002 * 109.47577 * 29.99624 * 4 3 2 33 33 H 1.09006 * 109.47268 * 149.99946 * 4 3 2 34 34 H 0.96997 * 120.00038 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.46962 * 59.99915 * 15 13 3 36 36 H 1.08997 * 109.46924 * 300.00070 * 15 13 3 37 37 H 1.00904 * 110.99913 * 56.04984 * 16 15 13 38 38 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.46832 * 60.00356 * 18 17 16 40 40 H 1.09004 * 109.47261 * 300.00337 * 18 17 16 41 41 H 1.09001 * 109.47066 * 299.99703 * 19 17 16 42 42 H 1.08996 * 109.47747 * 59.99369 * 19 17 16 43 43 H 1.09002 * 109.47103 * 179.97438 * 19 17 16 44 44 H 1.08998 * 109.46986 * 89.97418 * 23 22 21 45 45 H 1.09001 * 109.46725 * 209.97412 * 23 22 21 46 46 H 1.09003 * 109.47314 * 329.97289 * 23 22 21 47 47 H 1.08997 * 109.47668 * 90.00335 * 25 24 22 48 48 H 1.09007 * 109.46999 * 210.00085 * 25 24 22 49 49 H 1.08994 * 109.47238 * 329.99893 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1490 2.3897 -2.8781 8 7 5.3909 2.1827 -3.2580 9 14 3.0126 3.4351 -3.9293 10 1 3.1160 4.8554 -3.5082 11 1 3.4055 3.3120 -5.3560 12 1 1.6129 2.9692 -3.7592 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3111 2.2058 3.5888 17 6 2.0788 1.5450 4.8802 18 6 0.6088 1.1340 4.9856 19 6 2.9647 0.3020 4.9837 20 6 2.4152 2.4968 5.9991 21 7 2.3186 2.2226 7.2562 22 6 2.6547 3.1721 8.1059 23 6 2.5910 2.9887 9.6003 24 6 3.0577 4.3106 7.5338 25 6 3.4996 5.5575 8.2555 26 16 2.9865 4.0943 5.7866 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 5.7169 2.5732 -4.0839 35 1 2.6229 0.4187 2.5298 36 1 0.9446 1.0114 2.5302 37 1 1.7860 3.0648 3.5221 38 1 0.4363 0.6441 5.9439 39 1 0.3651 0.4457 4.1763 40 1 -0.0223 2.0197 4.9118 41 1 2.7210 -0.3863 4.1744 42 1 4.0119 0.5947 4.9086 43 1 2.7926 -0.1880 5.9421 44 1 3.5444 2.6017 9.9598 45 1 2.3857 3.9479 10.0756 46 1 1.7967 2.2838 9.8464 47 1 4.5749 5.5151 8.4291 48 1 3.2638 6.4316 7.6484 49 1 2.9798 5.6278 9.2109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072865857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:27 Heat of formation + Delta-G solvation = -15.324579 kcal Electronic energy + Delta-G solvation = -27682.631411 eV Core-core repulsion = 23963.643067 eV Total energy + Delta-G solvation = -3718.988344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23753 -40.73636 -38.73910 -36.93888 -34.87476 -34.21002 -32.33794 -31.68604 -30.47299 -29.83014 -28.37706 -27.78330 -26.38169 -25.22584 -24.35639 -23.67642 -21.08173 -20.02621 -19.48598 -19.14290 -18.95361 -18.02618 -17.46263 -16.70321 -16.39460 -16.21073 -15.95640 -15.63262 -15.38856 -14.83755 -14.69859 -14.58366 -14.48472 -14.10568 -14.04671 -13.93485 -13.86195 -13.75471 -13.68997 -13.34801 -13.21072 -13.12886 -12.90278 -12.81411 -12.61973 -12.52960 -12.40987 -12.36570 -12.24680 -12.01701 -11.87267 -11.83497 -11.72791 -10.82192 -10.62459 -10.57975 -10.15186 -9.63391 -9.46268 -9.35358 -8.32806 -6.37363 -0.25615 0.41056 0.89879 1.32282 1.36758 1.44773 1.79043 1.81824 2.15631 2.31469 2.77166 3.01666 3.27055 3.65813 3.81825 3.97886 3.99640 4.08044 4.10619 4.18181 4.23511 4.38690 4.44813 4.58855 4.62649 4.65078 4.66552 4.69362 4.78369 4.81345 4.83272 4.84252 4.93246 4.96743 5.02423 5.02929 5.03808 5.04175 5.13342 5.23810 5.40982 5.44073 5.48716 5.66151 5.80955 6.08667 6.26243 6.64345 6.75025 6.77611 7.23363 7.46756 8.84338 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.002714 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.409026 B =10314.534557 C =11327.070219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.227 3.773 5 C -0.533 4.533 6 H 0.028 0.972 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.497 3.503 14 O -0.582 6.582 15 C 0.056 3.944 16 N -0.681 5.681 17 C 0.192 3.808 18 C -0.166 4.166 19 C -0.129 4.129 20 C 0.048 3.952 21 N -0.479 5.479 22 C 0.037 3.963 23 C -0.072 4.072 24 C -0.242 4.242 25 C -0.073 4.073 26 S 0.125 5.875 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.268 0.732 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.345 0.655 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 -2.483 24.226 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.026 4.026 3 N -0.332 5.332 4 C 0.104 3.896 5 C -0.571 4.571 6 H 0.046 0.954 7 C -0.189 4.189 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.160 1.160 13 C 0.285 3.715 14 O -0.462 6.462 15 C -0.075 4.075 16 N -0.315 5.315 17 C 0.098 3.902 18 C -0.226 4.226 19 C -0.188 4.188 20 C -0.230 4.230 21 N -0.194 5.194 22 C -0.094 4.094 23 C -0.131 4.131 24 C -0.363 4.363 25 C -0.132 4.132 26 S 0.383 5.617 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.165 0.835 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.091 0.909 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.038 -1.904 23.321 26.314 hybrid contribution -0.456 0.527 -0.200 0.725 sum -12.494 -1.377 23.121 26.317 Atomic orbital electron populations 1.22162 0.93899 1.03688 1.02095 1.21797 0.95640 0.81091 1.04045 1.48034 1.64306 1.15227 1.05653 1.19264 0.94665 0.92979 0.82669 1.21572 0.97139 1.31890 1.06526 0.95402 1.25861 0.96704 0.97256 0.99031 1.70057 1.17469 1.46684 1.24490 0.85716 0.80508 0.78963 0.77751 1.20336 1.20066 1.16040 1.21166 0.77208 0.86712 0.86411 1.90648 1.47032 1.20649 1.87831 1.21912 1.03016 0.96201 0.86334 1.60186 1.63715 1.07219 1.00388 1.19364 0.96439 0.91058 0.83377 1.22447 0.93314 1.02419 1.04459 1.21853 0.98588 0.94838 1.03543 1.26857 1.03182 0.97623 0.95347 1.66001 1.19096 1.33628 1.00631 1.20650 1.01494 0.88430 0.98846 1.20415 1.03395 1.03956 0.85303 1.26274 1.11097 1.02995 0.95914 1.20351 1.02261 0.90617 0.99970 1.84672 1.60641 1.11727 1.04683 0.93597 0.88695 0.91885 0.91034 0.88461 0.93396 0.96536 0.92347 0.86313 0.88396 0.83471 0.90507 0.89218 0.92785 0.89682 0.93474 0.90512 0.90109 0.88757 0.90842 0.89809 0.90944 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 71.98 0.74 -2.49 16 2 C 0.10 2.65 5.93 86.38 0.51 3.16 16 3 N -0.60 -23.60 2.46 -826.14 -2.03 -25.63 16 4 C 0.23 11.00 4.23 85.63 0.36 11.37 16 5 C -0.53 -31.57 9.94 25.60 0.25 -31.32 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.55 5.47 84.65 0.46 1.01 16 8 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 9 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 13 C 0.50 19.56 7.71 87.66 0.68 20.23 16 14 O -0.58 -29.06 15.78 -3.03 -0.05 -29.11 16 15 C 0.06 1.49 3.93 85.56 0.34 1.82 16 16 N -0.68 -18.97 5.19 -477.89 -2.48 -21.45 16 17 C 0.19 4.35 0.93 2.78 0.00 4.35 16 18 C -0.17 -2.93 8.21 71.98 0.59 -2.34 16 19 C -0.13 -2.72 8.21 71.98 0.59 -2.13 16 20 C 0.05 1.22 5.82 88.52 0.51 1.74 16 21 N -0.48 -11.96 10.51 -179.40 -1.89 -13.85 16 22 C 0.04 0.81 6.74 41.52 0.28 1.09 16 23 C -0.07 -1.00 10.06 71.24 0.72 -0.28 16 24 C -0.24 -5.10 6.59 24.64 0.16 -4.94 16 25 C -0.07 -1.00 10.10 71.24 0.72 -0.28 16 26 S 0.13 3.25 21.94 -56.49 -1.24 2.01 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.12 7.22 -2.39 -0.02 1.10 16 30 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 31 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 32 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 33 H 0.02 0.87 6.85 -2.38 -0.02 0.85 16 34 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.12 2.80 5.56 -2.39 -0.01 2.78 16 36 H 0.10 1.87 5.35 -2.39 -0.01 1.86 16 37 H 0.35 10.22 7.85 -89.69 -0.70 9.52 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.21 6.40 -2.39 -0.02 1.20 16 40 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 1.44 6.40 -2.39 -0.02 1.43 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.09 0.87 6.72 -2.39 -0.02 0.85 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.10 0.90 6.76 -2.39 -0.02 0.89 16 Total: -1.00 -80.93 400.72 1.62 -79.31 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.20 Total: 21.24 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 6.92 Total: 1.00 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -6.09 Total: -121.23 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.24 Total: 2.01 kcal Total: -80.93 1.62 -79.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072865857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.987 kcal (2) G-P(sol) polarization free energy of solvation -80.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds