Wall clock time and date at job start Tue Mar 31 2020 23:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99797 * 2 1 4 4 C 1.52996 * 109.46884 * 184.89196 * 3 2 1 5 5 N 1.46900 * 109.47149 * 67.81943 * 4 3 2 6 6 C 1.46902 * 111.00177 * 287.65236 * 5 4 3 7 7 C 1.50693 * 109.47528 * 171.54577 * 6 5 4 8 8 H 1.07998 * 119.99929 * 4.70783 * 7 6 5 9 9 C 1.37878 * 120.00014 * 184.70182 * 7 6 5 10 10 N 1.31511 * 120.00218 * 5.05985 * 9 7 6 11 11 Si 1.86801 * 119.99990 * 185.05495 * 9 7 6 12 12 H 1.48505 * 109.46989 * 65.00465 * 11 9 7 13 13 H 1.48498 * 109.47229 * 185.00146 * 11 9 7 14 14 H 1.48498 * 109.47440 * 305.00711 * 11 9 7 15 15 C 1.46901 * 111.00439 * 163.69464 * 5 4 3 16 16 C 1.50700 * 109.47047 * 295.06283 * 15 5 4 17 17 C 1.38254 * 119.95142 * 267.93885 * 16 15 5 18 18 C 1.38205 * 120.17480 * 180.02562 * 17 16 15 19 19 C 1.38683 * 120.09551 * 359.97438 * 18 17 16 20 20 O 1.35991 * 120.04879 * 179.97438 * 19 18 17 21 21 C 1.42902 * 117.00154 * 0.02562 * 20 19 18 22 22 C 1.38962 * 119.90577 * 0.25710 * 19 18 17 23 23 O 1.36099 * 120.08813 * 179.70244 * 22 19 18 24 24 C 1.42899 * 117.00005 * 89.99817 * 23 22 19 25 25 C 1.38643 * 119.95709 * 87.96132 * 16 15 5 26 26 O 1.35996 * 120.04470 * 0.02562 * 25 16 15 27 27 C 1.42904 * 116.99862 * 90.00164 * 26 25 16 28 28 H 1.09003 * 109.47194 * 184.96574 * 1 2 3 29 29 H 1.09000 * 109.47316 * 304.96828 * 1 2 3 30 30 H 1.09007 * 109.46886 * 64.96898 * 1 2 3 31 31 H 1.09003 * 109.46856 * 64.89734 * 3 2 1 32 32 H 1.09000 * 109.47014 * 304.89493 * 3 2 1 33 33 H 1.09001 * 109.47307 * 307.81748 * 4 3 2 34 34 H 1.09004 * 109.47089 * 187.81662 * 4 3 2 35 35 H 1.09006 * 109.46833 * 291.54772 * 6 5 4 36 36 H 1.09000 * 109.47168 * 51.54465 * 6 5 4 37 37 H 0.97003 * 120.00301 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.47491 * 175.05654 * 15 5 4 39 39 H 1.09000 * 109.46523 * 55.05624 * 15 5 4 40 40 H 1.07998 * 119.90802 * 359.97438 * 17 16 15 41 41 H 1.08007 * 119.95194 * 179.97438 * 18 17 16 42 42 H 1.09004 * 109.47077 * 59.99873 * 21 20 19 43 43 H 1.09001 * 109.47128 * 300.00047 * 21 20 19 44 44 H 1.08993 * 109.47347 * 180.02562 * 21 20 19 45 45 H 1.09006 * 109.47180 * 59.99827 * 24 23 22 46 46 H 1.08994 * 109.47005 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47386 * 300.00088 * 24 23 22 48 48 H 1.09000 * 109.46691 * 179.97438 * 27 26 25 49 49 H 1.08991 * 109.46861 * 299.99972 * 27 26 25 50 50 H 1.09003 * 109.46917 * 59.99806 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5306 1.1868 -0.1230 5 7 3.8755 0.6723 -1.4551 6 6 3.5368 -0.7522 -1.5732 7 6 3.7082 -1.1925 -3.0041 8 1 4.1082 -0.5063 -3.7359 9 6 3.3546 -2.4713 -3.3791 10 7 2.7759 -3.2742 -2.5130 11 14 3.6972 -3.0634 -5.1173 12 1 5.1643 -3.1178 -5.3415 13 1 3.1178 -4.4181 -5.3020 14 1 3.0823 -2.1251 -6.0902 15 6 5.2944 0.9029 -1.7575 16 6 5.5559 2.3847 -1.8410 17 6 5.4711 3.0330 -3.0592 18 6 5.7105 4.3916 -3.1412 19 6 6.0363 5.1104 -2.0009 20 8 6.2722 6.4472 -2.0827 21 6 6.1663 7.0467 -3.3756 22 6 6.1272 4.4617 -0.7753 23 8 6.4526 5.1624 0.3451 24 6 5.3740 5.7275 1.0930 25 6 5.8815 3.0959 -0.6963 26 8 5.9655 2.4571 0.5013 27 6 7.2406 1.9232 0.8638 28 1 -0.3634 -1.0238 0.0890 29 1 -0.3634 0.5890 0.8421 30 1 -0.3633 0.4348 -0.9312 31 1 1.7597 1.8147 0.9306 32 1 1.6209 1.8765 -0.8429 33 1 3.9045 0.5026 0.6387 34 1 3.9841 2.1682 0.0160 35 1 4.1962 -1.3368 -0.9316 36 1 2.5020 -0.9062 -1.2672 37 1 2.5268 -4.1738 -2.7769 38 1 5.5435 0.4357 -2.7102 39 1 5.9090 0.4694 -0.9685 40 1 5.2180 2.4759 -3.9492 41 1 5.6437 4.8944 -4.0948 42 1 5.1569 6.9033 -3.7611 43 1 6.8831 6.5809 -4.0519 44 1 6.3787 8.1131 -3.3001 45 1 4.7082 4.9321 1.4280 46 1 5.7708 6.2582 1.9584 47 1 4.8203 6.4234 0.4629 48 1 7.1689 1.4417 1.8390 49 1 7.5530 1.1914 0.1189 50 1 7.9723 2.7297 0.9100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093099979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:30 Heat of formation + Delta-G solvation = -107.715073 kcal Electronic energy + Delta-G solvation = -31685.334996 eV Core-core repulsion = 27487.294678 eV Total energy + Delta-G solvation = -4198.040318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.77878 -38.95516 -37.90503 -37.40431 -36.50340 -35.41723 -32.47452 -30.75203 -29.98803 -29.25659 -27.82783 -27.17880 -26.49846 -26.25587 -25.50926 -24.25426 -22.29471 -21.93119 -21.34518 -19.69666 -18.49182 -17.19916 -17.15808 -16.48898 -16.19649 -16.10961 -15.70594 -15.55110 -15.41214 -14.96860 -14.73366 -14.68185 -14.59527 -14.25973 -14.04528 -13.60732 -13.39796 -13.07363 -12.77442 -12.62420 -12.31032 -11.98502 -11.82979 -11.81697 -11.68514 -11.29584 -11.22259 -11.05804 -10.95502 -10.82905 -10.74994 -10.64529 -10.43743 -10.31374 -10.26889 -9.66611 -9.50611 -9.16655 -8.80206 -8.53055 -8.21598 -7.95498 -7.08089 -5.89187 -3.88618 1.10396 1.38358 3.03918 3.37398 3.39386 3.42186 3.44120 3.82257 4.15122 4.49397 4.51529 4.82305 4.98089 4.99882 5.09715 5.15091 5.23686 5.32611 5.36840 5.38555 5.40679 5.42392 5.44912 5.46124 5.58975 5.64762 5.66552 5.76056 5.85266 5.94099 5.96072 6.02904 6.12087 6.20856 6.25181 6.32946 6.45340 6.46732 6.58910 6.67931 6.83860 7.07128 7.38735 7.53134 7.66660 7.78434 7.84579 7.91974 8.35321 8.47261 8.71944 9.19447 9.72407 11.21184 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.003819 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.149416 B = 7330.340727 C = 8382.890610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.069 3.931 4 C 0.056 3.944 5 N -0.524 5.524 6 C 0.180 3.820 7 C -0.507 4.507 8 H 0.058 0.942 9 C 0.057 3.943 10 N -0.893 5.893 11 Si 0.890 3.110 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.104 3.896 16 C -0.102 4.102 17 C -0.051 4.051 18 C -0.203 4.203 19 C 0.110 3.890 20 O -0.310 6.310 21 C 0.026 3.974 22 C 0.039 3.961 23 O -0.321 6.321 24 C 0.039 3.961 25 C 0.117 3.883 26 O -0.324 6.324 27 C 0.038 3.962 28 H 0.080 0.920 29 H 0.027 0.973 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.084 0.916 35 H -0.021 1.021 36 H 0.080 0.920 37 H 0.259 0.741 38 H 0.094 0.906 39 H 0.031 0.969 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.092 0.908 49 H 0.048 0.952 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 18.313 3.897 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.284 6.284 3 C -0.008 4.008 4 C -0.073 4.073 5 N -0.249 5.249 6 C 0.056 3.944 7 C -0.546 4.546 8 H 0.076 0.924 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.718 3.282 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.024 4.024 16 C -0.104 4.104 17 C -0.070 4.070 18 C -0.221 4.221 19 C 0.064 3.936 20 O -0.223 6.223 21 C -0.069 4.069 22 C -0.006 4.006 23 O -0.238 6.238 24 C -0.056 4.056 25 C 0.072 3.928 26 O -0.241 6.241 27 C -0.056 4.056 28 H 0.099 0.901 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.102 0.898 35 H -0.004 1.004 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.049 0.951 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.061 0.939 48 H 0.110 0.890 49 H 0.067 0.933 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.781 18.334 3.940 19.352 hybrid contribution 0.275 -0.600 -0.807 1.043 sum 5.056 17.734 3.133 18.705 Atomic orbital electron populations 1.22626 0.82737 1.02076 0.98820 1.88162 1.18363 1.27133 1.94759 1.22531 0.94661 0.85167 0.98419 1.22178 0.92914 1.00401 0.91772 1.62271 1.15296 1.22526 1.24819 1.20175 0.98998 0.79264 0.95951 1.21172 1.41717 0.96877 0.94786 0.92417 1.24931 0.95435 0.97018 0.96978 1.69981 1.41062 1.07608 1.34590 0.86705 0.78390 0.77797 0.85316 1.20547 1.21482 1.20304 1.20869 0.90986 0.88329 1.02218 1.20379 1.00543 0.97975 0.91482 1.20878 0.95241 0.92998 0.97835 1.21184 1.08097 0.95544 0.97307 1.19161 0.97802 0.83072 0.93600 1.86120 1.85417 1.18979 1.31772 1.23061 1.01472 0.98549 0.83820 1.18202 1.07870 0.89601 0.84942 1.86044 1.32179 1.69414 1.36140 1.22941 0.90152 0.97406 0.95072 1.18549 0.99349 0.88848 0.86031 1.86061 1.31731 1.72974 1.33340 1.22979 0.84014 0.97776 1.00857 0.90119 0.95419 0.94498 0.94595 0.93173 0.95033 0.89818 1.00371 0.90209 0.93153 0.88826 0.95141 0.84441 0.84992 0.92619 0.92618 0.88429 0.93344 0.89348 0.93921 0.88962 0.93318 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.68 16 2 O -0.37 -7.69 7.64 -35.23 -0.27 -7.96 16 3 C 0.07 1.29 6.22 37.16 0.23 1.52 16 4 C 0.06 1.10 4.72 -3.83 -0.02 1.08 16 5 N -0.52 -11.56 4.46 -237.52 -1.06 -12.62 16 6 C 0.18 4.80 4.48 -4.98 -0.02 4.78 16 7 C -0.51 -14.23 8.48 -34.44 -0.29 -14.52 16 8 H 0.06 1.57 6.88 -52.49 -0.36 1.21 16 9 C 0.06 1.64 5.45 -17.82 -0.10 1.55 16 10 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 11 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.10 2.04 4.79 -4.98 -0.02 2.02 16 16 C -0.10 -1.72 4.98 -104.47 -0.52 -2.24 16 17 C -0.05 -0.76 9.68 -39.59 -0.38 -1.15 16 18 C -0.20 -2.66 9.04 -39.43 -0.36 -3.01 16 19 C 0.11 1.56 6.70 -39.15 -0.26 1.29 16 20 O -0.31 -3.97 10.28 -34.31 -0.35 -4.32 16 21 C 0.03 0.22 9.81 101.05 0.99 1.21 16 22 C 0.04 0.60 5.75 -39.03 -0.22 0.37 16 23 O -0.32 -4.80 9.99 -45.31 -0.45 -5.25 16 24 C 0.04 0.46 11.13 101.05 1.13 1.58 16 25 C 0.12 1.88 4.42 -39.15 -0.17 1.71 16 26 O -0.32 -5.13 7.36 -34.30 -0.25 -5.38 16 27 C 0.04 0.49 10.77 101.05 1.09 1.58 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.66 8.05 -51.93 -0.42 0.24 16 34 H 0.08 1.54 4.30 -51.93 -0.22 1.32 16 35 H -0.02 -0.62 8.13 -51.93 -0.42 -1.05 16 36 H 0.08 2.30 4.96 -51.93 -0.26 2.04 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.09 1.95 6.39 -51.93 -0.33 1.62 16 39 H 0.03 0.61 6.34 -51.93 -0.33 0.28 16 40 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 41 H 0.13 1.35 6.29 -52.48 -0.33 1.02 16 42 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 43 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 50 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -33.35 401.11 -6.50 -39.85 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.05 Total: -0.32 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 2.18 Total: -0.55 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.32 Total: -38.73 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.33 Total: -22.92 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.35 -6.50 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.863 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds