Wall clock time and date at job start Tue Mar 31 2020 23:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99797 * 2 1 4 4 C 1.52996 * 109.46884 * 184.89196 * 3 2 1 5 5 N 1.46900 * 109.47149 * 67.81943 * 4 3 2 6 6 C 1.46902 * 111.00177 * 287.65236 * 5 4 3 7 7 C 1.50693 * 109.47528 * 171.54577 * 6 5 4 8 8 H 1.07998 * 119.99929 * 4.70783 * 7 6 5 9 9 C 1.37878 * 120.00014 * 184.70182 * 7 6 5 10 10 N 1.31511 * 120.00218 * 5.05985 * 9 7 6 11 11 Si 1.86801 * 119.99990 * 185.05495 * 9 7 6 12 12 H 1.48505 * 109.46989 * 65.00465 * 11 9 7 13 13 H 1.48498 * 109.47229 * 185.00146 * 11 9 7 14 14 H 1.48498 * 109.47440 * 305.00711 * 11 9 7 15 15 C 1.46901 * 111.00439 * 163.69464 * 5 4 3 16 16 C 1.50700 * 109.47047 * 295.06283 * 15 5 4 17 17 C 1.38254 * 119.95142 * 267.93885 * 16 15 5 18 18 C 1.38205 * 120.17480 * 180.02562 * 17 16 15 19 19 C 1.38683 * 120.09551 * 359.97438 * 18 17 16 20 20 O 1.35991 * 120.04879 * 179.97438 * 19 18 17 21 21 C 1.42902 * 117.00154 * 0.02562 * 20 19 18 22 22 C 1.38962 * 119.90577 * 0.25710 * 19 18 17 23 23 O 1.36099 * 120.08813 * 179.70244 * 22 19 18 24 24 C 1.42899 * 117.00005 * 89.99817 * 23 22 19 25 25 C 1.38643 * 119.95709 * 87.96132 * 16 15 5 26 26 O 1.35996 * 120.04470 * 0.02562 * 25 16 15 27 27 C 1.42904 * 116.99862 * 90.00164 * 26 25 16 28 28 H 1.09003 * 109.47194 * 184.96574 * 1 2 3 29 29 H 1.09000 * 109.47316 * 304.96828 * 1 2 3 30 30 H 1.09007 * 109.46886 * 64.96898 * 1 2 3 31 31 H 1.09003 * 109.46856 * 64.89734 * 3 2 1 32 32 H 1.09000 * 109.47014 * 304.89493 * 3 2 1 33 33 H 1.09001 * 109.47307 * 307.81748 * 4 3 2 34 34 H 1.09004 * 109.47089 * 187.81662 * 4 3 2 35 35 H 1.09006 * 109.46833 * 291.54772 * 6 5 4 36 36 H 1.09000 * 109.47168 * 51.54465 * 6 5 4 37 37 H 0.97003 * 120.00301 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.47491 * 175.05654 * 15 5 4 39 39 H 1.09000 * 109.46523 * 55.05624 * 15 5 4 40 40 H 1.07998 * 119.90802 * 359.97438 * 17 16 15 41 41 H 1.08007 * 119.95194 * 179.97438 * 18 17 16 42 42 H 1.09004 * 109.47077 * 59.99873 * 21 20 19 43 43 H 1.09001 * 109.47128 * 300.00047 * 21 20 19 44 44 H 1.08993 * 109.47347 * 180.02562 * 21 20 19 45 45 H 1.09006 * 109.47180 * 59.99827 * 24 23 22 46 46 H 1.08994 * 109.47005 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47386 * 300.00088 * 24 23 22 48 48 H 1.09000 * 109.46691 * 179.97438 * 27 26 25 49 49 H 1.08991 * 109.46861 * 299.99972 * 27 26 25 50 50 H 1.09003 * 109.46917 * 59.99806 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5306 1.1868 -0.1230 5 7 3.8755 0.6723 -1.4551 6 6 3.5368 -0.7522 -1.5732 7 6 3.7082 -1.1925 -3.0041 8 1 4.1082 -0.5063 -3.7359 9 6 3.3546 -2.4713 -3.3791 10 7 2.7759 -3.2742 -2.5130 11 14 3.6972 -3.0634 -5.1173 12 1 5.1643 -3.1178 -5.3415 13 1 3.1178 -4.4181 -5.3020 14 1 3.0823 -2.1251 -6.0902 15 6 5.2944 0.9029 -1.7575 16 6 5.5559 2.3847 -1.8410 17 6 5.4711 3.0330 -3.0592 18 6 5.7105 4.3916 -3.1412 19 6 6.0363 5.1104 -2.0009 20 8 6.2722 6.4472 -2.0827 21 6 6.1663 7.0467 -3.3756 22 6 6.1272 4.4617 -0.7753 23 8 6.4526 5.1624 0.3451 24 6 5.3740 5.7275 1.0930 25 6 5.8815 3.0959 -0.6963 26 8 5.9655 2.4571 0.5013 27 6 7.2406 1.9232 0.8638 28 1 -0.3634 -1.0238 0.0890 29 1 -0.3634 0.5890 0.8421 30 1 -0.3633 0.4348 -0.9312 31 1 1.7597 1.8147 0.9306 32 1 1.6209 1.8765 -0.8429 33 1 3.9045 0.5026 0.6387 34 1 3.9841 2.1682 0.0160 35 1 4.1962 -1.3368 -0.9316 36 1 2.5020 -0.9062 -1.2672 37 1 2.5268 -4.1738 -2.7769 38 1 5.5435 0.4357 -2.7102 39 1 5.9090 0.4694 -0.9685 40 1 5.2180 2.4759 -3.9492 41 1 5.6437 4.8944 -4.0948 42 1 5.1569 6.9033 -3.7611 43 1 6.8831 6.5809 -4.0519 44 1 6.3787 8.1131 -3.3001 45 1 4.7082 4.9321 1.4280 46 1 5.7708 6.2582 1.9584 47 1 4.8203 6.4234 0.4629 48 1 7.1689 1.4417 1.8390 49 1 7.5530 1.1914 0.1189 50 1 7.9723 2.7297 0.9100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093099979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:29 Heat of formation + Delta-G solvation = -130.166270 kcal Electronic energy + Delta-G solvation = -31686.308553 eV Core-core repulsion = 27487.294678 eV Total energy + Delta-G solvation = -4199.013875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.90418 -40.05840 -39.26879 -38.65208 -37.77259 -36.90386 -34.60099 -32.04357 -31.10355 -30.88251 -28.98595 -28.13860 -28.07645 -27.25125 -26.93454 -25.85552 -23.89901 -23.30417 -22.61770 -21.32959 -19.53167 -18.59267 -18.29810 -18.15580 -17.46229 -17.27075 -17.15582 -16.99700 -16.66547 -16.38315 -16.06535 -15.93894 -15.64994 -15.55439 -15.35489 -15.22851 -14.87473 -14.35083 -14.19869 -13.68851 -13.65443 -13.46949 -13.22586 -13.01232 -12.79794 -12.79247 -12.65304 -12.54079 -12.44043 -12.34045 -12.27154 -12.09232 -12.01219 -11.87494 -11.52106 -11.37200 -11.10097 -10.64251 -10.60547 -10.19460 -9.66422 -9.15799 -8.87979 -8.08481 -6.16188 -0.01611 0.22053 1.43256 1.46327 1.53798 2.07564 2.32131 2.46435 2.76570 2.99991 3.08161 3.24360 3.49803 3.83195 3.95682 4.03107 4.20617 4.25935 4.32683 4.37397 4.40481 4.43322 4.43669 4.44274 4.48911 4.50825 4.52886 4.57148 4.63534 4.66743 4.71845 4.76680 4.80177 4.85748 4.90137 4.97489 5.02503 5.07937 5.17787 5.34342 5.42309 5.54557 5.71128 5.77111 6.08411 6.21599 6.32603 6.39559 6.54727 6.68773 6.74533 7.00914 7.50232 9.02382 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.003819 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.149416 B = 7330.340727 C = 8382.890610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.070 3.930 4 C 0.061 3.939 5 N -0.525 5.525 6 C 0.197 3.803 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.003 3.997 10 N -0.931 5.931 11 Si 0.962 3.038 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.112 3.888 16 C -0.123 4.123 17 C -0.055 4.055 18 C -0.191 4.191 19 C 0.115 3.885 20 O -0.322 6.322 21 C 0.015 3.985 22 C 0.027 3.973 23 O -0.335 6.335 24 C 0.036 3.964 25 C 0.113 3.887 26 O -0.340 6.340 27 C 0.036 3.964 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.012 0.988 34 H 0.100 0.900 35 H -0.062 1.062 36 H 0.060 0.940 37 H 0.260 0.740 38 H 0.076 0.924 39 H 0.020 0.980 40 H 0.141 0.859 41 H 0.166 0.834 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.121 0.879 45 H 0.042 0.958 46 H 0.113 0.887 47 H 0.046 0.954 48 H 0.109 0.891 49 H 0.040 0.960 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 20.877 2.682 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C -0.006 4.006 4 C -0.067 4.067 5 N -0.249 5.249 6 C 0.071 3.929 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.195 4.195 10 N -0.571 5.571 11 Si 0.787 3.213 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.016 4.016 16 C -0.124 4.124 17 C -0.073 4.073 18 C -0.209 4.209 19 C 0.068 3.932 20 O -0.236 6.236 21 C -0.079 4.079 22 C -0.018 4.018 23 O -0.252 6.252 24 C -0.058 4.058 25 C 0.068 3.932 26 O -0.257 6.257 27 C -0.058 4.058 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.118 0.882 35 H -0.045 1.045 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.038 0.962 40 H 0.159 0.841 41 H 0.183 0.817 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.139 0.861 45 H 0.061 0.939 46 H 0.131 0.869 47 H 0.065 0.935 48 H 0.128 0.872 49 H 0.059 0.941 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.001 20.938 2.723 21.698 hybrid contribution 0.235 -1.250 -0.367 1.324 sum 5.236 19.688 2.356 20.508 Atomic orbital electron populations 1.22768 0.80727 1.02693 1.00322 1.88090 1.20755 1.28646 1.95056 1.22602 0.93436 0.84582 1.00023 1.22204 0.94233 1.00360 0.89875 1.62212 1.17044 1.19347 1.26320 1.19804 0.96894 0.81501 0.94662 1.21489 1.41532 0.97382 0.95437 0.91961 1.25837 0.94991 0.97092 1.01532 1.70134 1.42100 1.07956 1.36945 0.85554 0.78632 0.77236 0.79872 1.19514 1.21223 1.19135 1.20693 0.89370 0.90789 1.00706 1.20101 1.03299 0.96058 0.92927 1.20969 0.95204 0.94013 0.97136 1.21410 1.06526 0.94515 0.98454 1.19245 0.96655 0.83986 0.93285 1.86118 1.84990 1.17956 1.34499 1.23427 1.02603 0.99707 0.82205 1.18294 1.08159 0.89438 0.85864 1.86011 1.33494 1.69397 1.36251 1.23110 0.89751 0.97306 0.95624 1.18566 0.99591 0.89310 0.85721 1.86005 1.33128 1.73192 1.33382 1.23108 0.83313 0.97896 1.01433 0.90395 0.92084 0.94346 0.91366 0.93158 0.96989 0.88219 1.04487 0.92260 0.93103 0.90593 0.96184 0.84141 0.81697 0.91481 0.91417 0.86080 0.93928 0.86856 0.93490 0.87224 0.94131 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.28 16 2 O -0.41 -17.46 7.64 -148.98 -1.14 -18.60 16 3 C 0.07 2.60 6.22 71.98 0.45 3.04 16 4 C 0.06 2.48 4.72 86.30 0.41 2.89 16 5 N -0.53 -24.00 4.46 -905.36 -4.04 -28.04 16 6 C 0.20 11.02 4.48 85.55 0.38 11.40 16 7 C -0.52 -30.02 8.48 25.60 0.22 -29.80 16 8 H 0.06 3.45 6.88 -2.91 -0.02 3.43 16 9 C 0.00 0.19 5.45 84.66 0.46 0.65 16 10 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 11 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.11 4.59 4.79 85.56 0.41 5.00 16 16 C -0.12 -4.15 4.98 -19.76 -0.10 -4.25 16 17 C -0.05 -1.58 9.68 22.27 0.22 -1.37 16 18 C -0.19 -4.53 9.04 22.37 0.20 -4.33 16 19 C 0.11 3.01 6.70 22.55 0.15 3.16 16 20 O -0.32 -7.34 10.28 -79.50 -0.82 -8.16 16 21 C 0.01 0.19 9.81 113.37 1.11 1.30 16 22 C 0.03 0.81 5.75 22.63 0.13 0.94 16 23 O -0.33 -9.54 9.99 -70.53 -0.70 -10.25 16 24 C 0.04 0.79 11.13 113.37 1.26 2.05 16 25 C 0.11 3.61 4.42 22.55 0.10 3.71 16 26 O -0.34 -10.84 7.36 -79.57 -0.59 -11.42 16 27 C 0.04 0.94 10.77 113.37 1.22 2.17 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.01 0.52 8.05 -2.39 -0.02 0.50 16 34 H 0.10 3.71 4.30 -2.39 -0.01 3.70 16 35 H -0.06 -3.90 8.13 -2.38 -0.02 -3.92 16 36 H 0.06 3.59 4.96 -2.39 -0.01 3.58 16 37 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.08 3.31 6.39 -2.39 -0.02 3.30 16 39 H 0.02 0.85 6.34 -2.39 -0.02 0.83 16 40 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.17 2.74 6.29 -2.91 -0.02 2.73 16 42 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 43 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 44 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.04 1.11 7.22 -2.39 -0.02 1.09 16 50 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -74.23 401.11 3.83 -70.40 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.93 Total: 17.67 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 7.87 Total: -1.14 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -3.75 Total: -85.32 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -3.25 Total: -48.43 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.23 3.83 -70.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.765 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds