Wall clock time and date at job start Tue Mar 31 2020 23:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00230 * 2 1 4 4 C 1.52995 * 109.47480 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47388 * 69.31368 * 4 3 2 6 6 C 1.46903 * 110.99732 * 300.95987 * 5 4 3 7 7 C 1.50694 * 109.47073 * 300.12792 * 6 5 4 8 8 H 1.07997 * 120.00122 * 354.98775 * 7 6 5 9 9 C 1.37882 * 119.99945 * 174.98911 * 7 6 5 10 10 N 1.31514 * 119.99950 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99927 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47564 * 89.99820 * 11 9 7 13 13 H 1.48502 * 109.47237 * 210.00086 * 11 9 7 14 14 H 1.48503 * 109.47121 * 329.99665 * 11 9 7 15 15 C 1.46904 * 111.00098 * 64.91237 * 5 4 3 16 16 C 1.50692 * 109.47157 * 66.04702 * 15 5 4 17 17 C 1.38683 * 119.99884 * 89.99819 * 16 15 5 18 18 O 1.35893 * 120.00022 * 0.02562 * 17 16 15 19 19 C 1.42899 * 117.00013 * 180.02562 * 18 17 16 20 20 C 1.38679 * 119.99904 * 180.02562 * 17 16 15 21 21 C 1.38672 * 119.99992 * 0.02562 * 20 17 16 22 22 O 1.35895 * 119.99983 * 179.97438 * 21 20 17 23 23 C 1.42903 * 117.00325 * 179.97438 * 22 21 20 24 24 C 1.38672 * 120.00051 * 0.24328 * 21 20 17 25 25 C 1.38676 * 120.00306 * 359.50217 * 24 21 20 26 26 O 1.35889 * 120.00372 * 180.23345 * 25 24 21 27 27 C 1.42904 * 117.00101 * 0.27054 * 26 25 24 28 28 H 1.08999 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46989 * 299.99874 * 1 2 3 30 30 H 1.09002 * 109.46917 * 60.00158 * 1 2 3 31 31 H 1.09001 * 109.47049 * 59.99657 * 3 2 1 32 32 H 1.09001 * 109.46995 * 300.00351 * 3 2 1 33 33 H 1.08997 * 109.46994 * 309.30911 * 4 3 2 34 34 H 1.09009 * 109.46876 * 189.31500 * 4 3 2 35 35 H 1.08999 * 109.46982 * 60.12953 * 6 5 4 36 36 H 1.09007 * 109.47217 * 180.12836 * 6 5 4 37 37 H 0.96997 * 119.99992 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.46985 * 306.04711 * 15 5 4 39 39 H 1.09003 * 109.47044 * 186.05098 * 15 5 4 40 40 H 1.09005 * 109.47124 * 180.02562 * 19 18 17 41 41 H 1.09003 * 109.47081 * 299.99805 * 19 18 17 42 42 H 1.08993 * 109.47208 * 59.99920 * 19 18 17 43 43 H 1.08002 * 119.99997 * 179.97438 * 20 17 16 44 44 H 1.08996 * 109.46406 * 299.99690 * 23 22 21 45 45 H 1.08999 * 109.46839 * 59.99237 * 23 22 21 46 46 H 1.08992 * 109.47115 * 179.97438 * 23 22 21 47 47 H 1.08007 * 119.99791 * 179.73142 * 24 21 20 48 48 H 1.09004 * 109.46929 * 300.00040 * 27 26 25 49 49 H 1.08997 * 109.46788 * 60.00081 * 27 26 25 50 50 H 1.08994 * 109.47010 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9845 0.6585 -1.2965 6 6 3.3889 -0.6572 -1.5654 7 6 3.7946 -1.6230 -0.4821 8 1 4.4952 -1.3161 0.2804 9 6 3.2713 -2.8985 -0.4643 10 7 3.6256 -3.7416 0.4808 11 14 2.0601 -3.4296 -1.7835 12 1 2.8011 -4.0171 -2.9285 13 1 1.1305 -4.4431 -1.2231 14 1 1.2854 -2.2507 -2.2478 15 6 3.6849 1.6035 -2.3807 16 6 4.5053 2.8542 -2.1979 17 6 5.7626 2.9493 -2.7754 18 8 6.2545 1.9149 -3.5066 19 6 7.5563 2.0813 -4.0719 20 6 6.5178 4.1002 -2.6067 21 6 6.0160 5.1555 -1.8602 22 8 6.7563 6.2830 -1.6944 23 6 6.1771 7.3306 -0.9139 24 6 4.7612 5.0582 -1.2780 25 6 4.0037 3.9095 -1.4510 26 8 2.7721 3.8160 -0.8846 27 6 2.3183 4.9410 -0.1291 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8465 0.5068 0.7942 34 1 3.9777 2.1670 0.1657 35 1 2.3028 -0.5674 -1.5841 36 1 3.7398 -1.0246 -2.5298 37 1 3.2572 -4.6388 0.4935 38 1 2.6252 1.8576 -2.3587 39 1 3.9290 1.1457 -3.3394 40 1 7.8276 1.1848 -4.6295 41 1 7.5537 2.9397 -4.7438 42 1 8.2804 2.2465 -3.2742 43 1 7.4971 4.1741 -3.0562 44 1 5.2463 7.6569 -1.3776 45 1 5.9728 6.9638 0.0920 46 1 6.8705 8.1698 -0.8604 47 1 4.3722 5.8785 -0.6929 48 1 3.0067 5.1264 0.6955 49 1 2.2784 5.8191 -0.7736 50 1 1.3241 4.7352 0.2673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:37 Heat of formation + Delta-G solvation = -96.167918 kcal Electronic energy + Delta-G solvation = -32137.440610 eV Core-core repulsion = 27939.901014 eV Total energy + Delta-G solvation = -4197.539596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89266 -39.06762 -38.95667 -37.85056 -35.97447 -35.20987 -32.31257 -31.03703 -29.75621 -28.98615 -28.20933 -27.58647 -27.24327 -26.25893 -25.56318 -24.11478 -22.32430 -21.83002 -21.19028 -19.36757 -18.86898 -17.39425 -16.71272 -16.43533 -16.35686 -16.28800 -15.87648 -15.58978 -15.50124 -15.39296 -15.34485 -14.74852 -14.51012 -14.10207 -13.96594 -13.90897 -13.49058 -12.92866 -12.66171 -12.58324 -12.43849 -12.13604 -11.83426 -11.68476 -11.66990 -11.56458 -11.48379 -11.46516 -11.11041 -10.95911 -10.90001 -10.74942 -10.43216 -10.16604 -10.04419 -9.91492 -9.56654 -8.92680 -8.77203 -8.22855 -8.16955 -7.85026 -6.91711 -5.74080 -3.64879 1.46019 1.47558 2.89786 3.12569 3.48369 3.54136 3.60764 3.71896 3.74993 4.61264 4.71348 4.74850 4.86706 4.88175 4.89417 5.01951 5.04564 5.09124 5.13211 5.18631 5.21108 5.26431 5.33695 5.34883 5.53516 5.61749 5.62225 5.74807 5.80179 5.91952 5.92696 6.01028 6.04559 6.18850 6.21792 6.23405 6.34572 6.41992 6.58950 6.63869 6.99641 7.05259 7.24592 7.39293 7.52906 7.57724 7.91311 8.02208 8.23052 8.38787 8.99228 9.33419 9.91476 11.40368 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.004075 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.563349 B = 6869.361221 C = 8255.287907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C 0.034 3.966 4 C 0.073 3.927 5 N -0.514 5.514 6 C 0.151 3.849 7 C -0.472 4.472 8 H 0.074 0.926 9 C 0.069 3.931 10 N -0.914 5.914 11 Si 0.870 3.130 12 H -0.283 1.283 13 H -0.293 1.293 14 H -0.264 1.264 15 C 0.106 3.894 16 C -0.162 4.162 17 C 0.220 3.780 18 O -0.290 6.290 19 C 0.027 3.973 20 C -0.278 4.278 21 C 0.192 3.808 22 O -0.316 6.316 23 C 0.029 3.971 24 C -0.332 4.332 25 C 0.202 3.798 26 O -0.300 6.300 27 C 0.026 3.974 28 H 0.076 0.924 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.030 0.970 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.027 0.973 36 H 0.012 0.988 37 H 0.257 0.743 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.135 0.865 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.132 0.868 48 H 0.055 0.945 49 H 0.052 0.948 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 23.441 -4.785 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.258 6.258 3 C -0.044 4.044 4 C -0.056 4.056 5 N -0.237 5.237 6 C 0.025 3.975 7 C -0.511 4.511 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.556 5.556 11 Si 0.699 3.301 12 H -0.210 1.210 13 H -0.219 1.219 14 H -0.189 1.189 15 C -0.022 4.022 16 C -0.164 4.164 17 C 0.172 3.828 18 O -0.202 6.202 19 C -0.068 4.068 20 C -0.298 4.298 21 C 0.146 3.854 22 O -0.229 6.229 23 C -0.067 4.067 24 C -0.351 4.351 25 C 0.155 3.845 26 O -0.212 6.212 27 C -0.069 4.069 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.153 0.847 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.117 0.883 47 H 0.149 0.851 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.378 22.713 -4.841 23.264 hybrid contribution -1.693 0.577 -0.355 1.824 sum -0.315 23.290 -5.196 23.865 Atomic orbital electron populations 1.22644 0.84393 1.01823 0.98220 1.88535 1.16637 1.26290 1.94374 1.23221 0.97312 0.85133 0.98739 1.22090 0.89684 0.99337 0.94493 1.62200 1.58824 1.02807 0.99888 1.20477 0.94627 0.85570 0.96784 1.20869 1.24733 0.95113 1.10366 0.90847 1.24740 0.96186 0.96608 0.95417 1.69905 1.45561 1.06219 1.33866 0.86932 0.82247 0.78308 0.82607 1.20991 1.21937 1.18914 1.20649 0.95229 0.89604 0.96710 1.18312 0.95342 0.97130 1.05626 1.17987 0.90742 0.85270 0.88789 1.86236 1.33269 1.37365 1.63288 1.23096 0.82672 1.03155 0.97914 1.20214 1.03514 0.94061 1.11963 1.18233 0.88895 0.85682 0.92548 1.86051 1.43901 1.23995 1.68927 1.23031 0.99700 0.89086 0.94835 1.21010 0.97997 1.01370 1.14769 1.18068 0.84000 0.91950 0.90452 1.86238 1.30048 1.40485 1.64441 1.23050 1.00573 0.88373 0.94914 0.90500 0.95344 0.95490 0.95224 0.93389 0.89291 0.91739 0.95567 0.97056 0.93331 0.94540 0.90549 0.88074 0.92900 0.92440 0.84734 0.92760 0.92602 0.88338 0.85067 0.92623 0.92909 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.34 -7.56 6.82 -35.23 -0.24 -7.80 16 3 C 0.03 0.65 4.58 37.16 0.17 0.82 16 4 C 0.07 1.51 5.03 -3.83 -0.02 1.49 16 5 N -0.51 -11.53 4.74 -237.52 -1.13 -12.65 16 6 C 0.15 3.88 3.26 -4.98 -0.02 3.86 16 7 C -0.47 -13.98 8.18 -34.44 -0.28 -14.26 16 8 H 0.07 2.38 7.11 -52.49 -0.37 2.01 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.91 -29.33 13.96 55.43 0.77 -28.56 16 11 Si 0.87 22.90 27.57 -169.99 -4.69 18.21 16 12 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 14 H -0.26 -6.70 6.40 56.52 0.36 -6.34 16 15 C 0.11 2.04 4.57 -4.98 -0.02 2.01 16 16 C -0.16 -2.74 4.92 -104.30 -0.51 -3.25 16 17 C 0.22 3.50 6.65 -39.25 -0.26 3.23 16 18 O -0.29 -4.63 9.53 -19.40 -0.18 -4.81 16 19 C 0.03 0.29 9.81 101.05 0.99 1.29 16 20 C -0.28 -3.86 8.97 -39.26 -0.35 -4.21 16 21 C 0.19 2.54 6.68 -39.26 -0.26 2.27 16 22 O -0.32 -3.65 10.49 -19.41 -0.20 -3.85 16 23 C 0.03 0.21 9.81 101.05 0.99 1.20 16 24 C -0.33 -4.17 8.02 -39.26 -0.31 -4.49 16 25 C 0.20 2.96 5.40 -39.26 -0.21 2.75 16 26 O -0.30 -4.06 5.72 -19.39 -0.11 -4.17 16 27 C 0.03 0.23 9.81 101.05 0.99 1.22 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.88 4.77 -51.93 -0.25 0.63 16 33 H 0.09 2.13 6.59 -51.93 -0.34 1.78 16 34 H 0.06 1.22 5.42 -51.92 -0.28 0.94 16 35 H 0.03 0.70 4.04 -51.93 -0.21 0.49 16 36 H 0.01 0.30 7.73 -51.93 -0.40 -0.10 16 37 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 38 H 0.04 0.70 5.51 -51.93 -0.29 0.41 16 39 H 0.08 1.50 7.40 -51.93 -0.38 1.11 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 42 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 43 H 0.13 1.61 6.29 -52.49 -0.33 1.28 16 44 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 45 H 0.06 0.38 7.64 -51.93 -0.40 -0.02 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.13 1.28 4.52 -52.48 -0.24 1.04 16 48 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 49 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 50 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -35.93 382.26 -5.73 -41.65 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.61 Total: -1.32 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 1.90 Total: -2.47 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.35 Total: -41.21 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.74 Total: -20.63 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.69 Total: 18.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.93 -5.73 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.514 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds