Wall clock time and date at job start Tue Mar 31 2020 23:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00230 * 2 1 4 4 C 1.52995 * 109.47480 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47388 * 69.31368 * 4 3 2 6 6 C 1.46903 * 110.99732 * 300.95987 * 5 4 3 7 7 C 1.50694 * 109.47073 * 300.12792 * 6 5 4 8 8 H 1.07997 * 120.00122 * 354.98775 * 7 6 5 9 9 C 1.37882 * 119.99945 * 174.98911 * 7 6 5 10 10 N 1.31514 * 119.99950 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99927 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47564 * 89.99820 * 11 9 7 13 13 H 1.48502 * 109.47237 * 210.00086 * 11 9 7 14 14 H 1.48503 * 109.47121 * 329.99665 * 11 9 7 15 15 C 1.46904 * 111.00098 * 64.91237 * 5 4 3 16 16 C 1.50692 * 109.47157 * 66.04702 * 15 5 4 17 17 C 1.38683 * 119.99884 * 89.99819 * 16 15 5 18 18 O 1.35893 * 120.00022 * 0.02562 * 17 16 15 19 19 C 1.42899 * 117.00013 * 180.02562 * 18 17 16 20 20 C 1.38679 * 119.99904 * 180.02562 * 17 16 15 21 21 C 1.38672 * 119.99992 * 0.02562 * 20 17 16 22 22 O 1.35895 * 119.99983 * 179.97438 * 21 20 17 23 23 C 1.42903 * 117.00325 * 179.97438 * 22 21 20 24 24 C 1.38672 * 120.00051 * 0.24328 * 21 20 17 25 25 C 1.38676 * 120.00306 * 359.50217 * 24 21 20 26 26 O 1.35889 * 120.00372 * 180.23345 * 25 24 21 27 27 C 1.42904 * 117.00101 * 0.27054 * 26 25 24 28 28 H 1.08999 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46989 * 299.99874 * 1 2 3 30 30 H 1.09002 * 109.46917 * 60.00158 * 1 2 3 31 31 H 1.09001 * 109.47049 * 59.99657 * 3 2 1 32 32 H 1.09001 * 109.46995 * 300.00351 * 3 2 1 33 33 H 1.08997 * 109.46994 * 309.30911 * 4 3 2 34 34 H 1.09009 * 109.46876 * 189.31500 * 4 3 2 35 35 H 1.08999 * 109.46982 * 60.12953 * 6 5 4 36 36 H 1.09007 * 109.47217 * 180.12836 * 6 5 4 37 37 H 0.96997 * 119.99992 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.46985 * 306.04711 * 15 5 4 39 39 H 1.09003 * 109.47044 * 186.05098 * 15 5 4 40 40 H 1.09005 * 109.47124 * 180.02562 * 19 18 17 41 41 H 1.09003 * 109.47081 * 299.99805 * 19 18 17 42 42 H 1.08993 * 109.47208 * 59.99920 * 19 18 17 43 43 H 1.08002 * 119.99997 * 179.97438 * 20 17 16 44 44 H 1.08996 * 109.46406 * 299.99690 * 23 22 21 45 45 H 1.08999 * 109.46839 * 59.99237 * 23 22 21 46 46 H 1.08992 * 109.47115 * 179.97438 * 23 22 21 47 47 H 1.08007 * 119.99791 * 179.73142 * 24 21 20 48 48 H 1.09004 * 109.46929 * 300.00040 * 27 26 25 49 49 H 1.08997 * 109.46788 * 60.00081 * 27 26 25 50 50 H 1.08994 * 109.47010 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9845 0.6585 -1.2965 6 6 3.3889 -0.6572 -1.5654 7 6 3.7946 -1.6230 -0.4821 8 1 4.4952 -1.3161 0.2804 9 6 3.2713 -2.8985 -0.4643 10 7 3.6256 -3.7416 0.4808 11 14 2.0601 -3.4296 -1.7835 12 1 2.8011 -4.0171 -2.9285 13 1 1.1305 -4.4431 -1.2231 14 1 1.2854 -2.2507 -2.2478 15 6 3.6849 1.6035 -2.3807 16 6 4.5053 2.8542 -2.1979 17 6 5.7626 2.9493 -2.7754 18 8 6.2545 1.9149 -3.5066 19 6 7.5563 2.0813 -4.0719 20 6 6.5178 4.1002 -2.6067 21 6 6.0160 5.1555 -1.8602 22 8 6.7563 6.2830 -1.6944 23 6 6.1771 7.3306 -0.9139 24 6 4.7612 5.0582 -1.2780 25 6 4.0037 3.9095 -1.4510 26 8 2.7721 3.8160 -0.8846 27 6 2.3183 4.9410 -0.1291 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8465 0.5068 0.7942 34 1 3.9777 2.1670 0.1657 35 1 2.3028 -0.5674 -1.5841 36 1 3.7398 -1.0246 -2.5298 37 1 3.2572 -4.6388 0.4935 38 1 2.6252 1.8576 -2.3587 39 1 3.9290 1.1457 -3.3394 40 1 7.8276 1.1848 -4.6295 41 1 7.5537 2.9397 -4.7438 42 1 8.2804 2.2465 -3.2742 43 1 7.4971 4.1741 -3.0562 44 1 5.2463 7.6569 -1.3776 45 1 5.9728 6.9638 0.0920 46 1 6.8705 8.1698 -0.8604 47 1 4.3722 5.8785 -0.6929 48 1 3.0067 5.1264 0.6955 49 1 2.2784 5.8191 -0.7736 50 1 1.3241 4.7352 0.2673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:36 Heat of formation + Delta-G solvation = -123.301503 kcal Electronic energy + Delta-G solvation = -32138.617211 eV Core-core repulsion = 27939.901014 eV Total energy + Delta-G solvation = -4198.716197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92724 -40.08171 -39.96733 -39.33165 -37.38275 -36.44042 -34.51777 -32.33317 -30.79249 -30.71458 -29.18194 -28.85119 -28.07268 -27.44697 -26.93522 -25.57810 -24.08961 -22.83734 -22.52318 -20.96867 -19.91434 -18.87672 -18.37428 -17.60343 -17.46840 -17.34607 -17.07414 -16.92974 -16.65450 -16.39253 -16.35326 -16.13501 -15.71100 -15.66747 -15.55699 -15.20029 -15.01207 -14.36740 -13.89729 -13.67998 -13.57715 -13.48205 -13.34725 -13.00336 -12.91679 -12.65163 -12.55077 -12.48156 -12.42773 -12.37178 -12.25456 -12.21026 -12.02426 -11.90803 -11.65405 -11.59101 -11.18818 -10.91342 -10.63497 -10.24278 -9.18440 -8.98788 -8.63636 -8.09673 -6.05149 0.39860 0.42430 1.38416 1.39848 1.53031 1.98195 2.32071 2.48976 2.64787 2.79904 3.12937 3.27852 3.58865 3.91803 3.96204 4.01199 4.07046 4.27528 4.29860 4.34144 4.40225 4.41960 4.43449 4.44096 4.45067 4.51892 4.54988 4.57685 4.62238 4.67811 4.72484 4.74854 4.77242 4.79380 4.83787 4.87815 5.02368 5.09243 5.22251 5.33983 5.41211 5.46442 5.55149 5.74895 6.14700 6.19864 6.43534 6.51700 6.55252 6.59179 6.86954 6.95393 7.55340 9.08164 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.004075 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.563349 B = 6869.361221 C = 8255.287907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.387 6.387 3 C 0.044 3.956 4 C 0.081 3.919 5 N -0.531 5.531 6 C 0.166 3.834 7 C -0.468 4.468 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.960 5.960 11 Si 0.937 3.063 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.248 1.248 15 C 0.119 3.881 16 C -0.198 4.198 17 C 0.209 3.791 18 O -0.322 6.322 19 C 0.020 3.980 20 C -0.287 4.287 21 C 0.196 3.804 22 O -0.326 6.326 23 C 0.016 3.984 24 C -0.326 4.326 25 C 0.205 3.795 26 O -0.318 6.318 27 C 0.015 3.985 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.002 0.998 37 H 0.259 0.741 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.149 0.851 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.122 0.878 47 H 0.163 0.837 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 26.585 -5.513 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.306 6.306 3 C -0.034 4.034 4 C -0.047 4.047 5 N -0.254 5.254 6 C 0.039 3.961 7 C -0.506 4.506 8 H 0.046 0.954 9 C -0.183 4.183 10 N -0.604 5.604 11 Si 0.762 3.238 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.172 1.172 15 C -0.009 4.009 16 C -0.200 4.200 17 C 0.161 3.839 18 O -0.234 6.234 19 C -0.075 4.075 20 C -0.306 4.306 21 C 0.149 3.851 22 O -0.239 6.239 23 C -0.078 4.078 24 C -0.346 4.346 25 C 0.157 3.843 26 O -0.231 6.231 27 C -0.079 4.079 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.020 0.980 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.166 0.834 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.141 0.859 47 H 0.180 0.820 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.168 25.906 -5.570 26.499 hybrid contribution -1.221 -0.217 -0.030 1.241 sum -1.053 25.689 -5.600 26.314 Atomic orbital electron populations 1.22800 0.82198 1.02152 1.00340 1.88434 1.19262 1.28158 1.94742 1.23137 0.95476 0.84415 1.00364 1.21928 0.91608 0.98833 0.92370 1.62060 1.59287 1.02466 1.01625 1.20168 0.94718 0.86718 0.94481 1.20992 1.23383 0.96154 1.10102 0.95422 1.25563 0.98284 0.96600 0.97812 1.70064 1.47368 1.06769 1.36193 0.85869 0.79915 0.78386 0.79609 1.20220 1.21304 1.17171 1.20469 0.95844 0.89878 0.94685 1.18272 0.96171 0.97032 1.08551 1.18146 0.90845 0.85890 0.88987 1.86180 1.35320 1.38250 1.63686 1.23350 0.80954 1.04748 0.98398 1.20357 1.04007 0.93818 1.12438 1.18372 0.89067 0.86015 0.91626 1.86054 1.44303 1.24093 1.69432 1.23401 1.01092 0.88517 0.94767 1.21242 0.97449 1.01433 1.14448 1.18094 0.84575 0.91808 0.89780 1.86192 1.29442 1.42787 1.64707 1.23397 1.01508 0.87848 0.95188 0.91168 0.92829 0.93648 0.92795 0.92173 0.93619 0.89822 0.95235 0.98028 0.93213 0.94345 0.91870 0.86921 0.90824 0.91998 0.83350 0.91351 0.91809 0.85949 0.82008 0.91574 0.90962 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.39 -16.99 6.82 -148.98 -1.02 -18.01 16 3 C 0.04 1.62 4.58 71.98 0.33 1.95 16 4 C 0.08 3.43 5.03 86.30 0.43 3.87 16 5 N -0.53 -24.45 4.74 -905.39 -4.29 -28.75 16 6 C 0.17 8.71 3.26 85.55 0.28 8.99 16 7 C -0.47 -28.88 8.18 25.60 0.21 -28.67 16 8 H 0.03 1.91 7.11 -2.91 -0.02 1.89 16 9 C 0.01 0.76 5.47 84.66 0.46 1.22 16 10 N -0.96 -63.74 13.96 21.45 0.30 -63.44 16 11 Si 0.94 47.92 27.57 68.60 1.89 49.81 16 12 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.25 -11.92 6.40 99.48 0.64 -11.28 16 15 C 0.12 4.60 4.57 85.55 0.39 4.99 16 16 C -0.20 -6.65 4.92 -19.66 -0.10 -6.74 16 17 C 0.21 6.64 6.65 22.48 0.15 6.79 16 18 O -0.32 -10.47 9.53 -92.35 -0.88 -11.35 16 19 C 0.02 0.43 9.81 113.37 1.11 1.54 16 20 C -0.29 -7.66 8.97 22.48 0.20 -7.46 16 21 C 0.20 4.73 6.68 22.48 0.15 4.88 16 22 O -0.33 -6.60 10.49 -92.36 -0.97 -7.57 16 23 C 0.02 0.18 9.81 113.37 1.11 1.29 16 24 C -0.33 -7.31 8.02 22.48 0.18 -7.13 16 25 C 0.20 5.64 5.40 22.48 0.12 5.77 16 26 O -0.32 -7.87 5.72 -92.30 -0.53 -8.39 16 27 C 0.01 0.21 9.81 113.37 1.11 1.32 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 2.10 4.77 -2.39 -0.01 2.08 16 33 H 0.05 2.31 6.59 -2.39 -0.02 2.29 16 34 H 0.08 3.17 5.42 -2.38 -0.01 3.16 16 35 H 0.03 1.57 4.04 -2.39 -0.01 1.56 16 36 H 0.00 0.09 7.73 -2.38 -0.02 0.08 16 37 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 38 H 0.04 1.45 5.51 -2.39 -0.01 1.44 16 39 H 0.06 2.55 7.40 -2.39 -0.02 2.53 16 40 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.07 1.25 7.66 -2.39 -0.02 1.24 16 42 H 0.06 1.25 7.66 -2.39 -0.02 1.24 16 43 H 0.15 3.37 6.29 -2.91 -0.02 3.35 16 44 H 0.07 0.57 7.67 -2.39 -0.02 0.56 16 45 H 0.06 0.61 7.64 -2.39 -0.02 0.60 16 46 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.16 2.48 4.52 -2.91 -0.01 2.46 16 48 H 0.07 0.81 7.65 -2.38 -0.02 0.79 16 49 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 50 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -81.48 382.26 2.78 -78.69 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.88 Total: 14.42 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 7.40 Total: -5.41 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -3.99 Total: -92.19 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -3.39 Total: -45.32 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.89 Total: 49.81 kcal Total: -81.48 2.78 -78.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.610 kcal (2) G-P(sol) polarization free energy of solvation -81.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds