Wall clock time and date at job start Tue Mar 31 2020 23:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00243 * 2 1 4 4 C 1.52999 * 109.47242 * 184.72920 * 3 2 1 5 5 N 1.46894 * 109.47333 * 64.46884 * 4 3 2 6 6 C 1.46902 * 111.00193 * 195.93536 * 5 4 3 7 7 C 1.50697 * 109.47212 * 72.71339 * 6 5 4 8 8 H 1.07999 * 119.99922 * 5.23029 * 7 6 5 9 9 C 1.37877 * 120.00164 * 185.22146 * 7 6 5 10 10 N 1.31509 * 120.00184 * 5.44671 * 9 7 6 11 11 Si 1.86802 * 120.00040 * 185.44518 * 9 7 6 12 12 H 1.48500 * 109.47144 * 94.97060 * 11 9 7 13 13 H 1.48503 * 109.47081 * 214.97554 * 11 9 7 14 14 H 1.48501 * 109.47158 * 334.97255 * 11 9 7 15 15 C 1.46905 * 110.99954 * 71.98206 * 5 4 3 16 16 C 1.50700 * 109.47103 * 190.00018 * 15 5 4 17 17 C 1.38233 * 119.90796 * 269.73022 * 16 15 5 18 18 C 1.38668 * 120.08774 * 179.72772 * 17 16 15 19 19 O 1.35997 * 120.04516 * 180.29049 * 18 17 16 20 20 C 1.42899 * 117.00183 * 0.27208 * 19 18 17 21 21 C 1.38977 * 119.90768 * 0.56497 * 18 17 16 22 22 O 1.36098 * 120.09082 * 179.68456 * 21 18 17 23 23 C 1.42902 * 116.99932 * 270.02145 * 22 21 18 24 24 C 1.38985 * 119.82349 * 359.70332 * 21 18 17 25 25 O 1.35993 * 120.04371 * 179.97438 * 24 21 18 26 26 C 1.42903 * 116.99932 * 180.02562 * 25 24 21 27 27 C 1.38220 * 119.91134 * 89.99940 * 16 15 5 28 28 H 1.09002 * 109.47218 * 64.75150 * 1 2 3 29 29 H 1.09003 * 109.47097 * 184.74745 * 1 2 3 30 30 H 1.08998 * 109.47550 * 304.75440 * 1 2 3 31 31 H 1.08996 * 109.46992 * 64.72343 * 3 2 1 32 32 H 1.08999 * 109.46975 * 304.72708 * 3 2 1 33 33 H 1.09000 * 109.47020 * 304.46490 * 4 3 2 34 34 H 1.09002 * 109.46855 * 184.47041 * 4 3 2 35 35 H 1.08998 * 109.47086 * 192.72178 * 6 5 4 36 36 H 1.09011 * 109.46950 * 312.72014 * 6 5 4 37 37 H 0.96993 * 120.00392 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47065 * 309.99731 * 15 5 4 39 39 H 1.08999 * 109.46792 * 70.00261 * 15 5 4 40 40 H 1.08002 * 119.95581 * 359.97438 * 17 16 15 41 41 H 1.09003 * 109.46878 * 300.00263 * 20 19 18 42 42 H 1.09001 * 109.46635 * 59.99956 * 20 19 18 43 43 H 1.08999 * 109.46983 * 180.02562 * 20 19 18 44 44 H 1.08999 * 109.46813 * 299.99556 * 23 22 21 45 45 H 1.09003 * 109.47043 * 59.99946 * 23 22 21 46 46 H 1.08998 * 109.46760 * 179.97438 * 23 22 21 47 47 H 1.09001 * 109.46734 * 300.00460 * 26 25 24 48 48 H 1.08994 * 109.47014 * 59.99818 * 26 25 24 49 49 H 1.08994 * 109.47397 * 180.02562 * 26 25 24 50 50 H 1.07999 * 119.95767 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5309 1.1865 -0.1189 5 7 3.8758 0.5956 -1.4188 6 6 5.2652 0.1188 -1.4284 7 6 5.3739 -1.1290 -0.5905 8 1 4.4854 -1.5757 -0.1693 9 6 6.6076 -1.7004 -0.3616 10 7 7.6989 -1.0997 -0.7829 11 14 6.7290 -3.3280 0.5472 12 1 6.7901 -4.4400 -0.4351 13 1 7.9562 -3.3378 1.3832 14 1 5.5369 -3.5000 1.4159 15 6 3.6392 1.5500 -2.5103 16 6 3.7657 0.8408 -3.8340 17 6 4.9920 0.7803 -4.4690 18 6 5.1139 0.1238 -5.6844 19 8 6.3220 0.0597 -6.3055 20 6 7.4245 0.6856 -5.6463 21 6 3.9986 -0.4637 -6.2695 22 8 4.1126 -1.1035 -7.4653 23 6 3.9121 -0.3187 -8.6426 24 6 2.7662 -0.3959 -5.6304 25 8 1.6718 -0.9687 -6.1991 26 6 0.4381 -0.8595 -5.4864 27 6 2.6542 0.2573 -4.4123 28 1 -0.3634 0.4384 -0.9295 29 1 -0.3633 -1.0242 0.0851 30 1 -0.3634 0.5858 0.8443 31 1 1.7571 1.8157 0.9292 32 1 1.6232 1.8754 -0.8446 33 1 3.9093 0.5504 0.6813 34 1 3.9800 2.1765 -0.0392 35 1 5.5659 -0.1036 -2.4522 36 1 5.9169 0.8901 -1.0177 37 1 8.5669 -1.5015 -0.6216 38 1 2.6370 1.9681 -2.4165 39 1 4.3744 2.3529 -2.4566 40 1 5.8572 1.2415 -4.0161 41 1 7.2163 1.7481 -5.5194 42 1 7.5726 0.2252 -4.6694 43 1 8.3253 0.5615 -6.2473 44 1 2.9072 0.1035 -8.6310 45 1 4.6448 0.4878 -8.6708 46 1 4.0317 -0.9488 -9.5239 47 1 0.5405 -1.3303 -4.5086 48 1 0.1846 0.1928 -5.3580 49 1 -0.3516 -1.3579 -6.0484 50 1 1.6970 0.3101 -3.9149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:40 Heat of formation + Delta-G solvation = -113.318362 kcal Electronic energy + Delta-G solvation = -31468.597150 eV Core-core repulsion = 27270.313855 eV Total energy + Delta-G solvation = -4198.283295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53434 -38.72894 -38.09296 -37.46790 -36.88239 -35.28917 -32.54236 -30.90751 -29.45807 -29.12610 -27.66350 -27.57584 -26.92400 -26.28990 -25.55895 -24.13282 -22.31477 -21.64159 -21.45223 -19.89940 -18.10305 -17.06026 -16.95227 -16.46197 -16.20921 -15.97970 -15.92981 -15.65722 -15.27680 -14.96561 -14.76734 -14.61768 -14.48599 -14.33456 -14.10295 -13.84128 -13.52489 -13.16760 -12.80725 -12.20257 -12.18542 -12.02644 -11.92363 -11.81990 -11.56886 -11.36211 -11.35840 -11.31416 -11.27613 -11.10919 -10.75762 -10.60323 -10.49664 -10.30383 -10.12101 -9.72848 -9.66981 -9.30256 -9.11828 -8.37420 -7.87720 -7.79254 -7.23098 -5.97114 -3.94950 1.49251 1.72151 3.06357 3.38047 3.44501 3.49413 3.74406 3.88286 4.15247 4.20269 4.50559 4.90629 5.05147 5.18466 5.24605 5.28718 5.31877 5.36242 5.39128 5.41618 5.42739 5.47120 5.52032 5.53779 5.57570 5.59140 5.61012 5.69529 5.71151 5.76863 5.84053 5.85225 5.88828 5.92462 5.98287 6.15597 6.36518 6.49123 6.63541 6.69697 6.92737 7.23523 7.29316 7.33293 7.51421 7.59235 7.89694 7.98090 8.13552 8.18742 8.59025 9.14396 9.68354 11.13695 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.007910 B = 0.004893 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3538.984721 B = 5721.552657 C = 7727.760887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.069 3.931 4 C 0.062 3.938 5 N -0.518 5.518 6 C 0.185 3.815 7 C -0.498 4.498 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.902 5.902 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.087 3.913 16 C 0.016 3.984 17 C -0.211 4.211 18 C 0.149 3.851 19 O -0.307 6.307 20 C 0.024 3.976 21 C 0.018 3.982 22 O -0.312 6.312 23 C 0.036 3.964 24 C 0.142 3.858 25 O -0.308 6.308 26 C 0.027 3.973 27 C -0.210 4.210 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.038 0.962 36 H -0.006 1.006 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.135 0.865 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.041 0.959 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.096 0.904 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 8.415 -8.861 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.009 4.009 4 C -0.066 4.066 5 N -0.243 5.243 6 C 0.060 3.940 7 C -0.536 4.536 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.543 5.543 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.041 4.041 16 C 0.015 3.985 17 C -0.231 4.231 18 C 0.103 3.897 19 O -0.220 6.220 20 C -0.071 4.071 21 C -0.027 4.027 22 O -0.228 6.228 23 C -0.059 4.059 24 C 0.096 3.904 25 O -0.221 6.221 26 C -0.068 4.068 27 C -0.229 4.229 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.012 0.988 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.153 0.847 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.115 0.885 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.472 7.439 -9.320 16.547 hybrid contribution 0.451 0.458 1.082 1.258 sum -11.021 7.897 -8.238 15.865 Atomic orbital electron populations 1.22666 0.82922 1.02077 0.98922 1.88132 1.17709 1.27276 1.94998 1.22637 0.95126 0.84775 0.98332 1.22026 0.92065 0.98035 0.94502 1.62114 1.28539 1.33680 0.99959 1.19929 0.80896 0.95044 0.98120 1.21200 0.92842 1.09111 1.30482 0.91549 1.24937 0.95695 0.97639 0.96247 1.69943 0.97644 1.38647 1.48023 0.86543 0.77332 0.84303 0.79638 1.20757 1.21526 1.19745 1.21083 1.00294 0.93311 0.89425 1.19321 0.91530 0.93713 0.93901 1.21037 0.99154 1.07135 0.95744 1.18871 0.85050 0.93998 0.91827 1.86073 1.14988 1.73646 1.47304 1.23143 0.87251 0.97162 0.99561 1.16859 0.88753 1.07108 0.89963 1.86174 1.91040 1.34676 1.10942 1.22914 0.99591 0.96222 0.87134 1.18850 0.85857 0.93283 0.92422 1.86093 1.15785 1.72743 1.47449 1.23061 0.84018 1.01686 0.98060 1.20805 1.00424 1.05788 0.95919 0.94887 0.90175 0.94995 0.94090 0.94257 0.88577 0.94603 0.94447 0.98779 0.93162 0.91167 0.94843 0.84681 0.92919 0.91183 0.88440 0.94134 0.94055 0.89534 0.92112 0.92897 0.88543 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.31 10.64 -35.23 -0.37 -6.69 16 3 C 0.07 1.05 6.09 37.16 0.23 1.27 16 4 C 0.06 1.15 5.19 -3.83 -0.02 1.13 16 5 N -0.52 -10.84 4.33 -237.51 -1.03 -11.87 16 6 C 0.18 4.68 4.59 -4.98 -0.02 4.65 16 7 C -0.50 -14.06 8.35 -34.44 -0.29 -14.35 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.06 1.58 5.45 -17.82 -0.10 1.48 16 10 N -0.90 -26.49 13.28 55.43 0.74 -25.75 16 11 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.09 1.51 4.96 -4.97 -0.02 1.48 16 16 C 0.02 0.29 4.93 -104.63 -0.52 -0.22 16 17 C -0.21 -3.90 6.84 -39.42 -0.27 -4.17 16 18 C 0.15 2.78 6.70 -39.15 -0.26 2.52 16 19 O -0.31 -5.44 10.28 -34.31 -0.35 -5.79 16 20 C 0.02 0.34 9.81 101.05 0.99 1.33 16 21 C 0.02 0.34 5.75 -39.03 -0.22 0.12 16 22 O -0.31 -5.67 9.99 -45.31 -0.45 -6.12 16 23 C 0.04 0.49 11.13 101.05 1.13 1.61 16 24 C 0.14 2.48 6.70 -39.15 -0.26 2.21 16 25 O -0.31 -4.83 10.28 -34.30 -0.35 -5.18 16 26 C 0.03 0.30 9.81 101.05 0.99 1.29 16 27 C -0.21 -3.54 8.69 -39.43 -0.34 -3.88 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.54 6.46 -51.93 -0.34 0.20 16 33 H 0.10 2.04 7.20 -51.93 -0.37 1.67 16 34 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 35 H 0.04 1.00 5.11 -51.93 -0.27 0.73 16 36 H -0.01 -0.15 8.02 -51.92 -0.42 -0.57 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.05 6.28 -51.93 -0.33 0.72 16 39 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 40 H 0.14 2.46 5.96 -52.49 -0.31 2.15 16 41 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 42 H 0.07 1.16 7.67 -51.93 -0.40 0.76 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 48 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 49 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.13 1.95 6.29 -52.49 -0.33 1.62 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -33.97 407.15 -6.73 -40.70 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.14 Total: -0.65 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 2.12 Total: -2.02 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.29 Total: -37.62 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.53 Total: -23.78 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.97 -6.73 -40.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.616 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds