Wall clock time and date at job start Tue Mar 31 2020 23:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00243 * 2 1 4 4 C 1.52999 * 109.47242 * 184.72920 * 3 2 1 5 5 N 1.46894 * 109.47333 * 64.46884 * 4 3 2 6 6 C 1.46902 * 111.00193 * 195.93536 * 5 4 3 7 7 C 1.50697 * 109.47212 * 72.71339 * 6 5 4 8 8 H 1.07999 * 119.99922 * 5.23029 * 7 6 5 9 9 C 1.37877 * 120.00164 * 185.22146 * 7 6 5 10 10 N 1.31509 * 120.00184 * 5.44671 * 9 7 6 11 11 Si 1.86802 * 120.00040 * 185.44518 * 9 7 6 12 12 H 1.48500 * 109.47144 * 94.97060 * 11 9 7 13 13 H 1.48503 * 109.47081 * 214.97554 * 11 9 7 14 14 H 1.48501 * 109.47158 * 334.97255 * 11 9 7 15 15 C 1.46905 * 110.99954 * 71.98206 * 5 4 3 16 16 C 1.50700 * 109.47103 * 190.00018 * 15 5 4 17 17 C 1.38233 * 119.90796 * 269.73022 * 16 15 5 18 18 C 1.38668 * 120.08774 * 179.72772 * 17 16 15 19 19 O 1.35997 * 120.04516 * 180.29049 * 18 17 16 20 20 C 1.42899 * 117.00183 * 0.27208 * 19 18 17 21 21 C 1.38977 * 119.90768 * 0.56497 * 18 17 16 22 22 O 1.36098 * 120.09082 * 179.68456 * 21 18 17 23 23 C 1.42902 * 116.99932 * 270.02145 * 22 21 18 24 24 C 1.38985 * 119.82349 * 359.70332 * 21 18 17 25 25 O 1.35993 * 120.04371 * 179.97438 * 24 21 18 26 26 C 1.42903 * 116.99932 * 180.02562 * 25 24 21 27 27 C 1.38220 * 119.91134 * 89.99940 * 16 15 5 28 28 H 1.09002 * 109.47218 * 64.75150 * 1 2 3 29 29 H 1.09003 * 109.47097 * 184.74745 * 1 2 3 30 30 H 1.08998 * 109.47550 * 304.75440 * 1 2 3 31 31 H 1.08996 * 109.46992 * 64.72343 * 3 2 1 32 32 H 1.08999 * 109.46975 * 304.72708 * 3 2 1 33 33 H 1.09000 * 109.47020 * 304.46490 * 4 3 2 34 34 H 1.09002 * 109.46855 * 184.47041 * 4 3 2 35 35 H 1.08998 * 109.47086 * 192.72178 * 6 5 4 36 36 H 1.09011 * 109.46950 * 312.72014 * 6 5 4 37 37 H 0.96993 * 120.00392 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47065 * 309.99731 * 15 5 4 39 39 H 1.08999 * 109.46792 * 70.00261 * 15 5 4 40 40 H 1.08002 * 119.95581 * 359.97438 * 17 16 15 41 41 H 1.09003 * 109.46878 * 300.00263 * 20 19 18 42 42 H 1.09001 * 109.46635 * 59.99956 * 20 19 18 43 43 H 1.08999 * 109.46983 * 180.02562 * 20 19 18 44 44 H 1.08999 * 109.46813 * 299.99556 * 23 22 21 45 45 H 1.09003 * 109.47043 * 59.99946 * 23 22 21 46 46 H 1.08998 * 109.46760 * 179.97438 * 23 22 21 47 47 H 1.09001 * 109.46734 * 300.00460 * 26 25 24 48 48 H 1.08994 * 109.47014 * 59.99818 * 26 25 24 49 49 H 1.08994 * 109.47397 * 180.02562 * 26 25 24 50 50 H 1.07999 * 119.95767 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5309 1.1865 -0.1189 5 7 3.8758 0.5956 -1.4188 6 6 5.2652 0.1188 -1.4284 7 6 5.3739 -1.1290 -0.5905 8 1 4.4854 -1.5757 -0.1693 9 6 6.6076 -1.7004 -0.3616 10 7 7.6989 -1.0997 -0.7829 11 14 6.7290 -3.3280 0.5472 12 1 6.7901 -4.4400 -0.4351 13 1 7.9562 -3.3378 1.3832 14 1 5.5369 -3.5000 1.4159 15 6 3.6392 1.5500 -2.5103 16 6 3.7657 0.8408 -3.8340 17 6 4.9920 0.7803 -4.4690 18 6 5.1139 0.1238 -5.6844 19 8 6.3220 0.0597 -6.3055 20 6 7.4245 0.6856 -5.6463 21 6 3.9986 -0.4637 -6.2695 22 8 4.1126 -1.1035 -7.4653 23 6 3.9121 -0.3187 -8.6426 24 6 2.7662 -0.3959 -5.6304 25 8 1.6718 -0.9687 -6.1991 26 6 0.4381 -0.8595 -5.4864 27 6 2.6542 0.2573 -4.4123 28 1 -0.3634 0.4384 -0.9295 29 1 -0.3633 -1.0242 0.0851 30 1 -0.3634 0.5858 0.8443 31 1 1.7571 1.8157 0.9292 32 1 1.6232 1.8754 -0.8446 33 1 3.9093 0.5504 0.6813 34 1 3.9800 2.1765 -0.0392 35 1 5.5659 -0.1036 -2.4522 36 1 5.9169 0.8901 -1.0177 37 1 8.5669 -1.5015 -0.6216 38 1 2.6370 1.9681 -2.4165 39 1 4.3744 2.3529 -2.4566 40 1 5.8572 1.2415 -4.0161 41 1 7.2163 1.7481 -5.5194 42 1 7.5726 0.2252 -4.6694 43 1 8.3253 0.5615 -6.2473 44 1 2.9072 0.1035 -8.6310 45 1 4.6448 0.4878 -8.6708 46 1 4.0317 -0.9488 -9.5239 47 1 0.5405 -1.3303 -4.5086 48 1 0.1846 0.1928 -5.3580 49 1 -0.3516 -1.3579 -6.0484 50 1 1.6970 0.3101 -3.9149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:39 Heat of formation + Delta-G solvation = -136.874835 kcal Electronic energy + Delta-G solvation = -31469.618635 eV Core-core repulsion = 27270.313855 eV Total energy + Delta-G solvation = -4199.304780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83669 -39.96290 -39.48209 -38.72479 -38.15308 -36.73657 -34.65348 -32.22367 -30.89936 -30.51130 -29.20096 -28.71103 -28.00571 -27.57699 -26.77851 -25.66312 -24.00788 -22.94445 -22.81905 -21.42682 -19.40576 -18.61979 -18.28927 -18.10577 -17.47881 -17.26886 -17.19708 -17.03497 -16.48433 -16.44168 -16.24958 -15.95369 -15.75855 -15.53270 -15.47967 -15.27207 -14.91942 -14.52503 -14.15343 -13.85670 -13.49759 -13.34698 -13.25658 -13.23069 -12.93099 -12.71966 -12.70512 -12.58434 -12.47253 -12.42147 -12.39243 -12.31818 -12.04238 -11.81496 -11.62764 -11.31034 -11.19093 -10.94790 -10.55793 -10.38011 -9.23245 -9.13523 -8.89279 -8.15648 -6.20960 0.13505 0.36890 1.37998 1.40621 1.51122 1.87351 2.39893 2.46306 2.70425 2.85907 3.09311 3.16819 3.43584 3.72094 3.94438 4.01913 4.17870 4.24367 4.27971 4.33653 4.35610 4.40281 4.42999 4.43727 4.50948 4.51787 4.53857 4.57316 4.63888 4.65917 4.68136 4.72501 4.75753 4.76142 4.78997 4.94018 5.01308 5.09809 5.15061 5.26238 5.36814 5.41662 5.56788 5.73187 6.05343 6.15427 6.27361 6.36893 6.52765 6.69915 6.71885 6.94613 7.46272 8.93967 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.007910 B = 0.004893 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3538.984721 B = 5721.552657 C = 7727.760887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.076 3.924 4 C 0.059 3.941 5 N -0.527 5.527 6 C 0.203 3.797 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.954 3.046 12 H -0.281 1.281 13 H -0.279 1.279 14 H -0.268 1.268 15 C 0.090 3.910 16 C 0.002 3.998 17 C -0.222 4.222 18 C 0.134 3.866 19 O -0.320 6.320 20 C 0.024 3.976 21 C 0.002 3.998 22 O -0.336 6.336 23 C 0.033 3.967 24 C 0.141 3.859 25 O -0.320 6.320 26 C 0.017 3.983 27 C -0.206 4.206 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.021 0.979 36 H -0.033 1.033 37 H 0.261 0.739 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.128 0.872 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.111 0.889 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.125 0.875 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 8.844 -9.120 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.000 4.000 4 C -0.069 4.069 5 N -0.252 5.252 6 C 0.077 3.923 7 C -0.550 4.550 8 H 0.071 0.929 9 C -0.191 4.191 10 N -0.570 5.570 11 Si 0.779 3.221 12 H -0.207 1.207 13 H -0.205 1.205 14 H -0.192 1.192 15 C -0.037 4.037 16 C 0.001 3.999 17 C -0.242 4.242 18 C 0.087 3.913 19 O -0.233 6.233 20 C -0.070 4.070 21 C -0.043 4.043 22 O -0.253 6.253 23 C -0.061 4.061 24 C 0.094 3.906 25 O -0.233 6.233 26 C -0.077 4.077 27 C -0.225 4.225 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.039 0.961 36 H -0.015 1.015 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.055 0.945 40 H 0.145 0.855 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.146 0.854 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.129 0.871 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.143 0.857 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.802 7.885 -9.575 18.557 hybrid contribution 1.086 0.333 1.099 1.580 sum -12.716 8.218 -8.477 17.352 Atomic orbital electron populations 1.22858 0.80431 1.03021 1.00656 1.88068 1.20558 1.28478 1.95391 1.22579 0.92209 0.84655 1.00596 1.22059 0.95033 0.97628 0.92139 1.61991 1.25225 1.35881 1.02081 1.19522 0.83261 0.93393 0.96144 1.21435 0.92440 1.10284 1.30821 0.92916 1.25702 0.95461 1.00765 0.97169 1.70043 0.98035 1.39974 1.48999 0.85603 0.77669 0.80209 0.78570 1.20681 1.20494 1.19242 1.21152 1.02170 0.92521 0.87842 1.19488 0.91755 0.94422 0.94256 1.21057 0.99372 1.07718 0.96058 1.19053 0.85577 0.94532 0.92109 1.86045 1.15297 1.74197 1.47779 1.23287 0.87518 0.97677 0.98564 1.17147 0.89359 1.07173 0.90629 1.86101 1.91323 1.36106 1.11788 1.23126 1.00174 0.96607 0.86189 1.18919 0.86242 0.93035 0.92394 1.86086 1.16600 1.72387 1.48260 1.23409 0.82685 1.03450 0.98117 1.21001 1.00923 1.04911 0.95647 0.93163 0.89820 0.93083 0.91531 0.91971 0.92203 0.93158 0.96142 1.01539 0.92975 0.87839 0.94524 0.85498 0.91215 0.94134 0.85425 0.93247 0.93851 0.87102 0.92557 0.90913 0.85662 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -13.37 10.64 -148.98 -1.59 -14.96 16 3 C 0.08 2.15 6.09 71.98 0.44 2.59 16 4 C 0.06 2.18 5.19 86.30 0.45 2.63 16 5 N -0.53 -22.12 4.33 -905.36 -3.92 -26.05 16 6 C 0.20 10.65 4.59 85.56 0.39 11.04 16 7 C -0.51 -29.78 8.35 25.60 0.21 -29.57 16 8 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 9 C 0.01 0.40 5.45 84.66 0.46 0.86 16 10 N -0.93 -56.02 13.28 21.45 0.28 -55.74 16 11 Si 0.95 46.36 29.54 68.60 2.03 48.38 16 12 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 15 C 0.09 3.06 4.96 85.56 0.42 3.48 16 16 C 0.00 0.06 4.93 -19.87 -0.10 -0.04 16 17 C -0.22 -8.48 6.84 22.37 0.15 -8.32 16 18 C 0.13 5.13 6.70 22.55 0.15 5.28 16 19 O -0.32 -11.64 10.28 -79.58 -0.82 -12.45 16 20 C 0.02 0.71 9.81 113.37 1.11 1.82 16 21 C 0.00 0.08 5.75 22.63 0.13 0.21 16 22 O -0.34 -12.19 9.99 -70.51 -0.70 -12.90 16 23 C 0.03 0.86 11.13 113.37 1.26 2.12 16 24 C 0.14 4.81 6.70 22.55 0.15 4.96 16 25 O -0.32 -9.54 10.28 -79.53 -0.82 -10.36 16 26 C 0.02 0.34 9.81 113.37 1.11 1.45 16 27 C -0.21 -6.68 8.69 22.37 0.19 -6.49 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.46 6.46 -2.39 -0.02 1.44 16 33 H 0.06 2.62 7.20 -2.39 -0.02 2.60 16 34 H 0.05 1.67 8.05 -2.39 -0.02 1.65 16 35 H 0.02 1.15 5.11 -2.39 -0.01 1.13 16 36 H -0.03 -1.88 8.02 -2.38 -0.02 -1.90 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.10 2.78 6.28 -2.39 -0.02 2.77 16 39 H 0.04 1.22 8.06 -2.39 -0.02 1.20 16 40 H 0.13 4.90 5.96 -2.91 -0.02 4.88 16 41 H 0.07 1.79 7.65 -2.39 -0.02 1.77 16 42 H 0.04 1.43 7.67 -2.39 -0.02 1.41 16 43 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 48 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 49 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.15 4.16 6.29 -2.91 -0.02 4.14 16 Total: -1.00 -75.95 407.15 3.19 -72.76 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.93 Total: 17.45 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 7.80 Total: -6.14 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -3.64 Total: -81.79 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -3.92 Total: -50.67 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.95 3.19 -72.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.115 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds