Wall clock time and date at job start Tue Mar 31 2020 23:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81403 * 102.99863 * 2 1 4 4 H 1.08997 * 109.04586 * 56.00537 * 3 2 1 5 5 C 1.54509 * 109.05544 * 297.08794 * 3 2 1 6 6 C 1.50464 * 108.85562 * 162.26640 * 5 3 2 7 7 C 1.54292 * 113.03425 * 92.15205 * 6 5 3 8 8 C 1.54068 * 112.28968 * 318.30286 * 7 6 5 9 9 N 1.44272 * 111.98305 * 318.92038 * 8 7 6 10 10 C 1.46899 * 110.99580 * 219.30898 * 9 8 7 11 11 C 1.50699 * 109.47213 * 301.95823 * 10 9 8 12 12 O 1.21275 * 119.99981 * 4.73789 * 11 10 9 13 13 N 1.34771 * 120.00029 * 184.74353 * 11 10 9 14 14 C 1.46500 * 120.00361 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47053 * 89.99367 * 14 13 11 16 16 H 1.07993 * 120.00030 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99527 * 180.02562 * 15 14 13 18 18 N 1.31502 * 120.00246 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99658 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47150 * 59.99945 * 19 17 15 21 21 H 1.48496 * 109.47229 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47044 * 300.00197 * 19 17 15 23 23 C 1.46498 * 120.00264 * 359.97438 * 13 11 10 24 24 C 1.53005 * 109.47326 * 90.00076 * 23 13 11 25 25 C 1.47197 * 109.47553 * 180.02562 * 24 23 13 26 26 N 9.02356 * 135.67611 * 58.25103 * 2 1 3 27 27 C 1.45866 * 109.05598 * 175.00468 * 3 2 1 28 28 H 1.09005 * 109.46635 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46953 * 299.99977 * 1 2 3 30 30 H 1.08997 * 109.47105 * 59.99975 * 1 2 3 31 31 H 1.09007 * 109.57218 * 282.07227 * 5 3 2 32 32 H 1.09002 * 109.57651 * 42.32336 * 5 3 2 33 33 H 1.08998 * 108.76925 * 213.07431 * 6 5 3 34 34 H 1.09007 * 108.76362 * 331.35129 * 6 5 3 35 35 H 1.08992 * 108.91805 * 79.03008 * 7 6 5 36 36 H 1.09003 * 108.91233 * 197.67257 * 7 6 5 37 37 H 1.08997 * 108.97832 * 198.26996 * 8 7 6 38 38 H 1.09001 * 108.97716 * 79.55823 * 8 7 6 39 39 H 1.09000 * 109.47431 * 61.96186 * 10 9 8 40 40 H 1.09012 * 109.46884 * 181.95864 * 10 9 8 41 41 H 1.08993 * 109.47757 * 210.00073 * 14 13 11 42 42 H 1.09002 * 109.46983 * 329.99769 * 14 13 11 43 43 H 0.97004 * 120.00274 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.47689 * 210.00194 * 23 13 11 45 45 H 1.09004 * 109.47163 * 330.00241 * 23 13 11 46 46 H 1.08996 * 109.46833 * 300.00643 * 24 23 13 47 47 H 1.08999 * 109.46632 * 60.00398 * 24 23 13 48 48 H 1.08991 * 108.79727 * 60.98327 * 27 3 2 49 49 H 1.09002 * 108.79010 * 302.74971 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7407 2.2437 0.8542 5 6 1.6875 2.4086 -1.3002 6 6 1.6279 3.9010 -1.1177 7 6 2.9120 4.6180 -1.5839 8 6 4.1878 3.8611 -1.1679 9 7 4.0920 3.3373 0.1730 10 6 5.3691 3.4774 0.8853 11 6 6.4520 2.7604 0.1208 12 8 6.2052 2.2626 -0.9572 13 7 7.6945 2.6723 0.6351 14 6 8.7474 1.9757 -0.1082 15 6 9.4604 2.9544 -1.0053 16 1 9.1597 3.9916 -1.0200 17 6 10.4967 2.5256 -1.8074 18 7 10.8625 1.2626 -1.7899 19 14 11.3811 3.7388 -2.9190 20 1 11.9873 4.8148 -2.0942 21 1 12.4474 3.0325 -3.6734 22 1 10.4112 4.3337 -3.8733 23 6 7.9928 3.2740 1.9371 24 6 7.7388 2.2480 3.0434 25 6 8.0379 2.8528 4.3517 26 7 8.2695 3.3176 5.3614 27 6 3.6674 1.9226 0.1201 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3557 2.1684 -2.1273 32 1 0.6899 2.0247 -1.5134 33 1 0.7828 4.2903 -1.6856 34 1 1.4700 4.1190 -0.0614 35 1 2.8924 4.7074 -2.6700 36 1 2.9372 5.6167 -1.1479 37 1 5.0376 4.5415 -1.2229 38 1 4.3516 3.0351 -1.8601 39 1 5.6235 4.5339 0.9709 40 1 5.2792 3.0435 1.8812 41 1 9.4594 1.5398 0.5925 42 1 8.3029 1.1855 -0.7133 43 1 11.5914 0.9608 -2.3545 44 1 9.0371 3.5851 1.9630 45 1 7.3513 4.1416 2.0920 46 1 6.6945 1.9369 3.0175 47 1 8.3803 1.3805 2.8886 48 1 4.1442 1.4448 -0.7357 49 1 3.9999 1.4220 1.0294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134575536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:29 Heat of formation + Delta-G solvation = -4.165504 kcal Electronic energy + Delta-G solvation = -28340.862514 eV Core-core repulsion = 24622.358064 eV Total energy + Delta-G solvation = -3718.504450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.23955 -38.33250 -36.85996 -35.37082 -34.24021 -32.88651 -32.51744 -30.87572 -29.34332 -28.78658 -27.02559 -25.07444 -24.77672 -24.02781 -22.60470 -20.86949 -19.76599 -18.50935 -17.62890 -16.99593 -16.48709 -16.38617 -16.04251 -15.89822 -15.23235 -14.77316 -14.68634 -14.48940 -14.37086 -14.09724 -13.89710 -13.66930 -13.58917 -13.21958 -13.02151 -12.80449 -12.56442 -12.46697 -12.41522 -12.19674 -12.07932 -11.81538 -11.41466 -11.29526 -11.22066 -11.05426 -10.99946 -10.85609 -10.81804 -10.64980 -10.59645 -10.24538 -10.20294 -9.81327 -9.77389 -9.64647 -8.50172 -8.02431 -7.88713 -7.78208 -6.11703 -4.16714 1.52089 2.46298 2.71776 2.80669 3.19873 3.27562 3.32713 3.35484 3.61412 4.03524 4.18013 4.38764 4.47033 4.78237 4.90874 4.93773 4.95456 5.01512 5.05802 5.09376 5.14432 5.22904 5.24512 5.26459 5.28194 5.44361 5.45904 5.51885 5.56560 5.71454 5.79737 5.86299 5.91248 6.02783 6.03693 6.07740 6.13118 6.17280 6.32443 6.42308 6.83940 7.02294 7.14548 7.32354 7.38653 7.56552 7.83550 8.13899 8.20522 8.77615 8.92185 9.48891 10.96326 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.003535 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.954468 B = 7918.393899 C = 9313.748688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.263 6.263 3 C -0.036 4.036 4 H 0.089 0.911 5 C -0.110 4.110 6 C -0.106 4.106 7 C -0.110 4.110 8 C 0.052 3.948 9 N -0.500 5.500 10 C 0.031 3.969 11 C 0.475 3.525 12 O -0.531 6.531 13 N -0.595 5.595 14 C 0.245 3.755 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.117 3.883 24 C -0.050 4.050 25 C 0.217 3.783 26 N -0.444 5.444 27 C 0.058 3.942 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.264 0.736 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.117 0.883 48 H 0.073 0.927 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.005 2.233 5.207 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.036 6.036 3 C -0.165 4.165 4 H 0.108 0.892 5 C -0.150 4.150 6 C -0.145 4.145 7 C -0.149 4.149 8 C -0.077 4.077 9 N -0.222 5.222 10 C -0.101 4.101 11 C 0.260 3.740 12 O -0.408 6.408 13 N -0.327 5.327 14 C 0.126 3.874 15 C -0.568 4.568 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.009 4.009 24 C -0.092 4.092 25 C -0.101 4.101 26 N -0.122 5.122 27 C -0.070 4.070 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.135 0.865 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.335 1.886 6.318 19.485 hybrid contribution 0.403 0.993 -1.369 1.739 sum -17.932 2.879 4.949 18.824 Atomic orbital electron populations 1.23383 0.94582 1.06154 1.04778 1.87049 1.06802 1.11782 1.97927 1.22180 1.00431 0.92442 1.01418 0.89226 1.21671 1.00841 0.95792 0.96654 1.21172 0.97254 0.94234 1.01837 1.21992 0.94137 0.98870 0.99865 1.21974 0.96523 0.99709 0.89460 1.61923 1.26001 1.16476 1.17828 1.22568 0.87301 1.02051 0.98149 1.21594 0.83985 0.81450 0.86965 1.90679 1.81068 1.47614 1.21390 1.48331 1.10973 1.55110 1.18249 1.19327 0.84045 0.92758 0.91283 1.21349 1.16166 0.95476 1.23831 0.92532 1.24908 0.96945 0.95259 0.96779 1.69902 1.28920 1.14503 1.39809 0.86592 0.79217 0.81031 0.80788 1.20237 1.21177 1.20208 1.21311 1.03862 0.93773 0.82001 1.19890 1.04736 1.00327 0.84224 1.29056 0.92976 0.93484 0.94578 1.81189 1.09304 1.09380 1.12305 1.20746 0.92980 0.89608 1.03692 0.88322 0.90692 0.90479 0.90598 0.92138 0.92891 0.91631 0.92270 0.92284 0.91874 0.91555 0.87852 0.88435 0.94882 0.93668 0.92590 0.88749 0.90570 0.87623 0.86519 0.90878 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.41 101.05 1.05 0.12 16 2 S -0.26 -3.01 21.70 -107.50 -2.33 -5.34 16 3 C -0.04 -0.40 2.39 -29.32 -0.07 -0.47 16 4 H 0.09 0.94 7.58 -51.91 -0.39 0.54 16 5 C -0.11 -1.14 4.93 -27.21 -0.13 -1.27 16 6 C -0.11 -1.02 5.42 -27.32 -0.15 -1.17 16 7 C -0.11 -1.20 6.14 -25.50 -0.16 -1.36 16 8 C 0.05 0.71 3.75 -4.67 -0.02 0.69 16 9 N -0.50 -6.28 4.45 -241.00 -1.07 -7.35 16 10 C 0.03 0.38 4.02 -4.98 -0.02 0.36 16 11 C 0.47 8.12 6.92 -10.99 -0.08 8.05 16 12 O -0.53 -11.29 11.98 5.56 0.07 -11.23 16 13 N -0.59 -10.37 2.46 -175.06 -0.43 -10.80 16 14 C 0.24 5.68 5.16 -5.19 -0.03 5.65 16 15 C -0.53 -13.89 9.39 -34.44 -0.32 -14.22 16 16 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.33 13.28 55.43 0.74 -24.59 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.12 1.48 5.10 -4.04 -0.02 1.46 16 24 C -0.05 -0.51 5.98 -29.52 -0.18 -0.68 16 25 C 0.22 2.56 15.43 -20.78 -0.32 2.24 16 26 N -0.44 -6.44 18.53 42.13 0.78 -5.66 16 27 C 0.06 0.75 3.37 -6.71 -0.02 0.73 16 28 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.54 6.70 -51.93 -0.35 0.19 16 31 H 0.08 0.92 7.15 -51.93 -0.37 0.55 16 32 H 0.06 0.55 6.23 -51.93 -0.32 0.22 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.95 7.33 -51.93 -0.38 0.57 16 38 H 0.07 1.09 5.46 -51.93 -0.28 0.81 16 39 H 0.10 1.14 7.60 -51.93 -0.39 0.75 16 40 H 0.10 0.96 6.73 -51.92 -0.35 0.61 16 41 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 42 H 0.05 1.21 7.42 -51.93 -0.39 0.83 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 45 H 0.08 0.78 6.57 -51.93 -0.34 0.44 16 46 H 0.11 0.86 7.13 -51.93 -0.37 0.49 16 47 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.07 1.20 5.91 -51.93 -0.31 0.89 16 49 H 0.07 0.90 7.67 -51.93 -0.40 0.51 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -31.44 395.13 -9.83 -41.27 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.95 Total: -0.05 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.56 Total: 1.78 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.01 Total: -48.41 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.07 Total: -11.23 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.33 Total: -5.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.44 -9.83 -41.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134575536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.104 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds