Wall clock time and date at job start Tue Mar 31 2020 23:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81403 * 102.99863 * 2 1 4 4 H 1.08997 * 109.04586 * 56.00537 * 3 2 1 5 5 C 1.54509 * 109.05544 * 297.08794 * 3 2 1 6 6 C 1.50464 * 108.85562 * 162.26640 * 5 3 2 7 7 C 1.54292 * 113.03425 * 92.15205 * 6 5 3 8 8 C 1.54068 * 112.28968 * 318.30286 * 7 6 5 9 9 N 1.44272 * 111.98305 * 318.92038 * 8 7 6 10 10 C 1.46899 * 110.99580 * 219.30898 * 9 8 7 11 11 C 1.50699 * 109.47213 * 301.95823 * 10 9 8 12 12 O 1.21275 * 119.99981 * 4.73789 * 11 10 9 13 13 N 1.34771 * 120.00029 * 184.74353 * 11 10 9 14 14 C 1.46500 * 120.00361 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47053 * 89.99367 * 14 13 11 16 16 H 1.07993 * 120.00030 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99527 * 180.02562 * 15 14 13 18 18 N 1.31502 * 120.00246 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99658 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47150 * 59.99945 * 19 17 15 21 21 H 1.48496 * 109.47229 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47044 * 300.00197 * 19 17 15 23 23 C 1.46498 * 120.00264 * 359.97438 * 13 11 10 24 24 C 1.53005 * 109.47326 * 90.00076 * 23 13 11 25 25 C 1.47197 * 109.47553 * 180.02562 * 24 23 13 26 26 N 9.02356 * 135.67611 * 58.25103 * 2 1 3 27 27 C 1.45866 * 109.05598 * 175.00468 * 3 2 1 28 28 H 1.09005 * 109.46635 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46953 * 299.99977 * 1 2 3 30 30 H 1.08997 * 109.47105 * 59.99975 * 1 2 3 31 31 H 1.09007 * 109.57218 * 282.07227 * 5 3 2 32 32 H 1.09002 * 109.57651 * 42.32336 * 5 3 2 33 33 H 1.08998 * 108.76925 * 213.07431 * 6 5 3 34 34 H 1.09007 * 108.76362 * 331.35129 * 6 5 3 35 35 H 1.08992 * 108.91805 * 79.03008 * 7 6 5 36 36 H 1.09003 * 108.91233 * 197.67257 * 7 6 5 37 37 H 1.08997 * 108.97832 * 198.26996 * 8 7 6 38 38 H 1.09001 * 108.97716 * 79.55823 * 8 7 6 39 39 H 1.09000 * 109.47431 * 61.96186 * 10 9 8 40 40 H 1.09012 * 109.46884 * 181.95864 * 10 9 8 41 41 H 1.08993 * 109.47757 * 210.00073 * 14 13 11 42 42 H 1.09002 * 109.46983 * 329.99769 * 14 13 11 43 43 H 0.97004 * 120.00274 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.47689 * 210.00194 * 23 13 11 45 45 H 1.09004 * 109.47163 * 330.00241 * 23 13 11 46 46 H 1.08996 * 109.46833 * 300.00643 * 24 23 13 47 47 H 1.08999 * 109.46632 * 60.00398 * 24 23 13 48 48 H 1.08991 * 108.79727 * 60.98327 * 27 3 2 49 49 H 1.09002 * 108.79010 * 302.74971 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7407 2.2437 0.8542 5 6 1.6875 2.4086 -1.3002 6 6 1.6279 3.9010 -1.1177 7 6 2.9120 4.6180 -1.5839 8 6 4.1878 3.8611 -1.1679 9 7 4.0920 3.3373 0.1730 10 6 5.3691 3.4774 0.8853 11 6 6.4520 2.7604 0.1208 12 8 6.2052 2.2626 -0.9572 13 7 7.6945 2.6723 0.6351 14 6 8.7474 1.9757 -0.1082 15 6 9.4604 2.9544 -1.0053 16 1 9.1597 3.9916 -1.0200 17 6 10.4967 2.5256 -1.8074 18 7 10.8625 1.2626 -1.7899 19 14 11.3811 3.7388 -2.9190 20 1 11.9873 4.8148 -2.0942 21 1 12.4474 3.0325 -3.6734 22 1 10.4112 4.3337 -3.8733 23 6 7.9928 3.2740 1.9371 24 6 7.7388 2.2480 3.0434 25 6 8.0379 2.8528 4.3517 26 7 8.2695 3.3176 5.3614 27 6 3.6674 1.9226 0.1201 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3557 2.1684 -2.1273 32 1 0.6899 2.0247 -1.5134 33 1 0.7828 4.2903 -1.6856 34 1 1.4700 4.1190 -0.0614 35 1 2.8924 4.7074 -2.6700 36 1 2.9372 5.6167 -1.1479 37 1 5.0376 4.5415 -1.2229 38 1 4.3516 3.0351 -1.8601 39 1 5.6235 4.5339 0.9709 40 1 5.2792 3.0435 1.8812 41 1 9.4594 1.5398 0.5925 42 1 8.3029 1.1855 -0.7133 43 1 11.5914 0.9608 -2.3545 44 1 9.0371 3.5851 1.9630 45 1 7.3513 4.1416 2.0920 46 1 6.6945 1.9369 3.0175 47 1 8.3803 1.3805 2.8886 48 1 4.1442 1.4448 -0.7357 49 1 3.9999 1.4220 1.0294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134575536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:28 Heat of formation + Delta-G solvation = -23.236609 kcal Electronic energy + Delta-G solvation = -28341.689500 eV Core-core repulsion = 24622.358064 eV Total energy + Delta-G solvation = -3719.331435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.46588 -39.48347 -37.95041 -36.70201 -35.31245 -34.79456 -33.46213 -32.15254 -30.40901 -29.68921 -28.52662 -26.20361 -25.80046 -25.29074 -24.18060 -21.90588 -20.74718 -19.80093 -18.81212 -18.33062 -18.08810 -17.50379 -17.24066 -16.90637 -16.61858 -16.04949 -15.83644 -15.63461 -15.43352 -15.30383 -14.81736 -14.66822 -14.44073 -14.36768 -14.09924 -13.99712 -13.72890 -13.60154 -13.53256 -13.34452 -13.20161 -13.08715 -12.88525 -12.72729 -12.53705 -12.43970 -12.18560 -12.06501 -11.99317 -11.83918 -11.78727 -11.67623 -11.48033 -11.15247 -11.04059 -10.62103 -10.59900 -9.45805 -9.23106 -8.66946 -8.18979 -6.31577 0.71450 1.38343 1.40983 1.47749 1.69251 1.71537 1.85665 1.89902 2.30265 2.44719 2.98892 3.11003 3.16078 3.58416 3.78900 3.95464 4.02696 4.10391 4.12795 4.17982 4.27621 4.30418 4.38092 4.41141 4.41541 4.54404 4.57087 4.62568 4.75705 4.83843 4.87394 4.95755 5.01084 5.05117 5.06793 5.09983 5.14092 5.20577 5.31188 5.32774 5.42371 5.51080 5.60528 5.85408 5.93610 6.04468 6.12251 6.61789 6.74404 6.82204 7.33607 7.52164 8.87369 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.003535 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.954468 B = 7918.393899 C = 9313.748688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 S -0.326 6.326 3 C -0.023 4.023 4 H 0.106 0.894 5 C -0.107 4.107 6 C -0.100 4.100 7 C -0.106 4.106 8 C 0.059 3.941 9 N -0.484 5.484 10 C 0.037 3.963 11 C 0.468 3.532 12 O -0.580 6.580 13 N -0.597 5.597 14 C 0.262 3.738 15 C -0.538 4.538 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.279 1.279 23 C 0.113 3.887 24 C -0.038 4.038 25 C 0.246 3.754 26 N -0.488 5.488 27 C 0.067 3.933 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.029 0.971 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.029 0.971 42 H -0.001 1.001 43 H 0.265 0.735 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.136 0.864 47 H 0.116 0.884 48 H 0.031 0.969 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.248 4.146 6.653 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 S -0.100 6.100 3 C -0.151 4.151 4 H 0.124 0.876 5 C -0.146 4.146 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.071 4.071 9 N -0.206 5.206 10 C -0.094 4.094 11 C 0.256 3.744 12 O -0.460 6.460 13 N -0.328 5.328 14 C 0.140 3.860 15 C -0.577 4.577 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.782 3.218 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.011 4.011 24 C -0.079 4.079 25 C -0.071 4.071 26 N -0.166 5.166 27 C -0.061 4.061 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.047 0.953 42 H 0.017 0.983 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.129 0.871 46 H 0.153 0.847 47 H 0.134 0.866 48 H 0.049 0.951 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.591 3.828 7.807 22.352 hybrid contribution 1.076 0.341 -1.855 2.171 sum -19.515 4.169 5.952 20.824 Atomic orbital electron populations 1.23428 0.90479 1.07267 1.05998 1.87305 1.11411 1.13155 1.98083 1.22072 0.98943 0.91799 1.02320 0.87592 1.21642 1.01002 0.96575 0.95356 1.21140 0.96953 0.93253 1.02566 1.21961 0.93336 0.99183 0.99976 1.21873 0.97604 0.98247 0.89327 1.62088 1.25593 1.15908 1.16989 1.22795 0.85019 1.02877 0.98720 1.22586 0.84485 0.80688 0.86619 1.90684 1.81874 1.49584 1.23876 1.48221 1.10012 1.54960 1.19616 1.18724 0.84816 0.91547 0.90871 1.21707 1.16110 0.95765 1.24135 0.92832 1.25729 0.97981 0.96827 0.98290 1.70018 1.29590 1.16184 1.40841 0.85635 0.77993 0.79210 0.78983 1.18688 1.20849 1.20508 1.21529 1.04112 0.95291 0.80214 1.19817 1.06573 0.99201 0.82294 1.29077 0.91551 0.92276 0.94192 1.81233 1.10899 1.10718 1.13725 1.20646 0.94191 0.89375 1.01876 0.87291 0.89132 0.89482 0.93278 0.90420 0.90940 0.90826 0.92397 0.90876 0.93559 0.95295 0.85450 0.84781 0.95262 0.98284 0.92633 0.89988 0.87142 0.84656 0.86553 0.95072 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.41 113.37 1.18 -0.17 16 2 S -0.33 -7.31 21.70 -56.49 -1.23 -8.54 16 3 C -0.02 -0.47 2.39 28.92 0.07 -0.41 16 4 H 0.11 1.89 7.58 -2.40 -0.02 1.87 16 5 C -0.11 -2.06 4.93 30.29 0.15 -1.91 16 6 C -0.10 -1.67 5.42 30.21 0.16 -1.51 16 7 C -0.11 -2.17 6.14 31.39 0.19 -1.97 16 8 C 0.06 1.61 3.75 87.16 0.33 1.94 16 9 N -0.48 -11.50 4.45 -916.40 -4.08 -15.58 16 10 C 0.04 0.83 4.02 85.56 0.34 1.18 16 11 C 0.47 16.09 6.92 87.66 0.61 16.69 16 12 O -0.58 -26.10 11.98 -3.01 -0.04 -26.14 16 13 N -0.60 -20.80 2.46 -826.17 -2.03 -22.83 16 14 C 0.26 12.62 5.16 85.63 0.44 13.06 16 15 C -0.54 -28.96 9.39 25.60 0.24 -28.72 16 16 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 17 C 0.01 0.60 5.46 84.66 0.46 1.07 16 18 N -0.93 -54.17 13.28 21.45 0.28 -53.88 16 19 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 C 0.11 2.65 5.10 86.38 0.44 3.09 16 24 C -0.04 -0.67 5.98 28.79 0.17 -0.50 16 25 C 0.25 5.24 15.43 89.45 1.38 6.62 16 26 N -0.49 -13.31 18.53 20.00 0.37 -12.94 16 27 C 0.07 1.74 3.37 83.94 0.28 2.03 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.98 6.70 -2.39 -0.02 0.96 16 31 H 0.05 1.23 7.15 -2.38 -0.02 1.21 16 32 H 0.08 1.23 6.23 -2.39 -0.01 1.22 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.16 7.38 -2.38 -0.02 1.14 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.40 7.33 -2.39 -0.02 1.38 16 38 H 0.03 1.02 5.46 -2.39 -0.01 1.00 16 39 H 0.13 2.34 7.60 -2.39 -0.02 2.32 16 40 H 0.13 2.05 6.73 -2.38 -0.02 2.04 16 41 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 42 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 43 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 45 H 0.11 1.86 6.57 -2.38 -0.02 1.85 16 46 H 0.14 1.69 7.13 -2.39 -0.02 1.67 16 47 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.03 1.09 5.91 -2.39 -0.01 1.08 16 49 H 0.07 1.79 7.67 -2.39 -0.02 1.78 16 Total: -1.00 -73.60 395.13 2.71 -70.89 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.94 Total: 12.80 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.45 Total: 10.49 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -5.45 Total: -105.23 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.04 Total: -26.14 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -7.31 SS G_CDS: -1.23 Total: -8.54 kcal Total: -73.60 2.71 -70.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134575536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.653 kcal (2) G-P(sol) polarization free energy of solvation -73.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds