Wall clock time and date at job start Tue Mar 31 2020 23:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36888 * 126.39598 * 2 1 4 4 C 1.34663 * 106.81769 * 179.97438 * 3 2 1 5 5 N 1.34122 * 108.02267 * 359.77678 * 4 3 2 6 6 C 1.30501 * 109.25511 * 0.37369 * 5 4 3 7 7 C 1.50703 * 125.65197 * 179.89697 * 6 5 4 8 8 H 1.09000 * 109.47253 * 164.68492 * 7 6 5 9 9 O 1.42902 * 109.47137 * 44.68765 * 7 6 5 10 10 C 1.53005 * 109.47002 * 284.68658 * 7 6 5 11 11 C 1.53120 * 109.52011 * 179.97438 * 10 7 6 12 12 C 1.53045 * 109.27382 * 177.62403 * 11 10 7 13 13 N 1.46844 * 109.52143 * 300.82250 * 12 11 10 14 14 C 1.46906 * 110.99887 * 185.83959 * 13 12 11 15 15 C 1.53000 * 109.47072 * 170.00138 * 14 13 12 16 16 C 1.52996 * 109.47188 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.47516 * 179.97438 * 16 15 14 18 18 C 1.76197 * 100.00143 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00081 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99891 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99891 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99828 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47655 * 90.00140 * 22 20 18 24 24 H 1.48506 * 109.47080 * 210.00020 * 22 20 18 25 25 H 1.48505 * 109.47289 * 329.99494 * 22 20 18 26 26 C 1.46853 * 111.20068 * 61.74346 * 13 12 11 27 27 C 1.53033 * 109.52262 * 298.25891 * 26 13 12 28 28 H 1.09000 * 109.47809 * 270.02950 * 1 2 3 29 29 H 1.08998 * 109.47155 * 30.03108 * 1 2 3 30 30 H 1.09000 * 109.46858 * 150.02427 * 1 2 3 31 31 H 1.07998 * 126.59172 * 0.02562 * 3 2 1 32 32 H 1.08007 * 125.99345 * 179.97438 * 4 3 2 33 33 H 0.96710 * 113.99994 * 299.99876 * 9 7 6 34 34 H 1.09005 * 109.51916 * 59.87580 * 10 7 6 35 35 H 1.08996 * 109.49890 * 57.68876 * 11 10 7 36 36 H 1.08994 * 109.50831 * 297.56339 * 11 10 7 37 37 H 1.09000 * 109.46052 * 180.80838 * 12 11 10 38 38 H 1.08998 * 109.45499 * 60.82968 * 12 11 10 39 39 H 1.08993 * 109.47164 * 289.99991 * 14 13 12 40 40 H 1.08996 * 109.46920 * 50.00025 * 14 13 12 41 41 H 1.09002 * 109.46936 * 299.99708 * 15 14 13 42 42 H 1.08996 * 109.47340 * 60.00144 * 15 14 13 43 43 H 1.08999 * 109.47452 * 300.00348 * 16 15 14 44 44 H 1.09012 * 109.47215 * 59.99738 * 16 15 14 45 45 H 0.97000 * 119.99775 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46125 * 58.27453 * 26 13 12 47 47 H 1.09003 * 109.46462 * 178.23846 * 26 13 12 48 48 H 1.09007 * 109.50330 * 299.23709 * 27 26 13 49 49 H 1.08999 * 109.53502 * 179.13924 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6506 0.0006 5 7 3.5096 -0.6901 0.0059 6 6 2.2663 -1.0869 0.0006 7 6 1.8018 -2.5205 0.0017 8 1 0.7456 -2.5601 0.2679 9 8 2.5615 -3.2666 0.9548 10 6 1.9996 -3.1218 -1.3913 11 6 1.5286 -4.5787 -1.3913 12 6 1.6735 -5.1565 -2.8011 13 7 0.8709 -4.3637 -3.7412 14 6 0.8752 -4.9707 -5.0790 15 6 -0.1594 -4.2686 -5.9608 16 6 -0.1554 -4.9011 -7.3539 17 16 -1.3798 -4.0712 -8.3970 18 6 -1.1674 -4.9736 -9.8953 19 1 -0.4403 -5.7704 -9.9474 20 6 -1.9354 -4.6611 -11.0085 21 7 -2.8228 -3.6910 -10.9446 22 14 -1.7108 -5.6183 -12.5968 23 1 -2.6250 -6.7885 -12.6032 24 1 -2.0232 -4.7398 -13.7526 25 1 -0.3054 -6.0876 -12.6974 26 6 1.3355 -2.9716 -3.7934 27 6 1.1806 -2.3287 -2.4133 28 1 -0.3635 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9612 2.1346 0.0004 32 1 4.4368 1.2612 0.0003 33 1 3.5126 -3.2750 0.7800 34 1 3.0554 -3.0806 -1.6592 35 1 0.4833 -4.6232 -1.0855 36 1 2.1367 -5.1578 -0.6965 37 1 1.3255 -6.1894 -2.8078 38 1 2.7209 -5.1241 -3.1008 39 1 1.8645 -4.8630 -5.5236 40 1 0.6262 -6.0287 -4.9987 41 1 -1.1487 -4.3763 -5.5162 42 1 0.0897 -3.2106 -6.0411 43 1 0.8339 -4.7939 -7.7988 44 1 -0.4047 -5.9593 -7.2733 45 1 -3.3592 -3.4724 -11.7226 46 1 2.3845 -2.9497 -4.0886 47 1 0.7421 -2.4177 -4.5208 48 1 0.1298 -2.3378 -2.1235 49 1 1.5396 -1.3001 -2.4481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136207184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:09 Heat of formation + Delta-G solvation = -4.014351 kcal Electronic energy + Delta-G solvation = -27019.542519 eV Core-core repulsion = 23301.044624 eV Total energy + Delta-G solvation = -3718.497895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51810 -39.56586 -37.43009 -34.77472 -34.32255 -32.44750 -32.19608 -30.94695 -30.17098 -27.66275 -27.00626 -25.67390 -24.74576 -23.44035 -22.63840 -21.71786 -20.64933 -20.24943 -19.99060 -17.89943 -17.46077 -16.86171 -16.14207 -15.94652 -15.53039 -15.30127 -14.85521 -14.79857 -14.69364 -14.27960 -14.19209 -14.00869 -13.78686 -13.57143 -13.26224 -13.14133 -13.12131 -12.86842 -12.50239 -12.34831 -11.91553 -11.66552 -11.43071 -11.34324 -11.28691 -11.06671 -10.91200 -10.78960 -10.68482 -10.56362 -10.41795 -10.27354 -10.13794 -9.94965 -9.51192 -9.05470 -8.72712 -8.32997 -8.28997 -6.52120 -6.22525 -3.92458 1.65801 2.38270 2.79289 3.21594 3.22238 3.29056 3.53944 3.82780 3.91601 4.04944 4.23164 4.29180 4.32120 4.43224 4.55039 4.66854 4.72158 4.93708 4.96442 5.02233 5.10924 5.13442 5.16235 5.21622 5.30169 5.35280 5.40068 5.41888 5.50280 5.56467 5.62429 5.71641 5.77068 5.82896 5.87546 5.88143 5.94818 5.94933 6.12618 6.15353 6.36382 6.42467 6.60696 6.75793 6.76423 7.08890 7.11301 7.20451 7.60954 7.74172 8.37095 9.23850 10.85682 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.001904 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.009744 B =14698.518538 C =15503.611972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.451 5.451 3 C -0.056 4.056 4 C -0.027 4.027 5 N -0.486 5.486 6 C 0.178 3.822 7 C 0.203 3.797 8 H 0.108 0.892 9 O -0.545 6.545 10 C -0.111 4.111 11 C -0.104 4.104 12 C 0.055 3.945 13 N -0.537 5.537 14 C 0.060 3.940 15 C -0.093 4.093 16 C -0.112 4.112 17 S -0.134 6.134 18 C -0.515 4.515 19 H 0.072 0.928 20 C 0.070 3.930 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.054 3.946 27 C -0.107 4.107 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.175 0.825 32 H 0.170 0.830 33 H 0.386 0.614 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.267 0.733 46 H 0.031 0.969 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.374 6.214 25.550 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.135 5.135 3 C -0.189 4.189 4 C -0.176 4.176 5 N -0.206 5.206 6 C -0.085 4.085 7 C 0.142 3.858 8 H 0.126 0.874 9 O -0.349 6.349 10 C -0.131 4.131 11 C -0.142 4.142 12 C -0.073 4.073 13 N -0.261 5.261 14 C -0.069 4.069 15 C -0.132 4.132 16 C -0.262 4.262 17 S 0.095 5.905 18 C -0.664 4.664 19 H 0.090 0.910 20 C -0.138 4.138 21 N -0.506 5.506 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.074 4.074 27 C -0.145 4.145 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.192 0.808 32 H 0.187 0.813 33 H 0.235 0.765 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.982 6.556 26.130 28.097 hybrid contribution 1.610 -0.622 -1.973 2.622 sum 9.592 5.933 24.156 26.660 Atomic orbital electron populations 1.22180 0.76433 1.05334 1.03899 1.45248 1.07670 1.06465 1.54068 1.22761 0.91368 0.92630 1.12131 1.22284 0.96504 0.91007 1.07776 1.70082 1.18364 1.12332 1.19776 1.24131 0.86393 0.91904 1.06068 1.20170 0.95623 0.80592 0.89426 0.87385 1.86543 1.23967 1.72510 1.51904 1.21895 1.01404 0.96210 0.93618 1.21551 1.02317 0.94068 0.96258 1.22077 0.95330 0.97583 0.92300 1.61943 1.53493 1.01908 1.08791 1.22170 0.98209 0.98990 0.87504 1.21280 0.99429 0.99406 0.93057 1.23234 1.02884 1.02331 0.97716 1.84605 1.48292 1.48863 1.08770 1.22691 1.25818 1.21306 0.96539 0.90993 1.25017 0.94593 0.95395 0.98841 1.70024 1.21858 1.28187 1.30502 0.86168 0.78664 0.79412 0.81297 1.20261 1.20769 1.19711 1.22092 0.98498 0.89708 0.97062 1.21577 1.00264 0.98194 0.94496 0.90246 0.89107 0.89045 0.80780 0.81278 0.76499 0.90247 0.90895 0.90770 0.90534 0.95116 0.95044 0.90785 0.90795 0.91787 0.92411 0.92134 0.92337 0.95036 0.89798 0.91077 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 10.75 59.84 0.64 0.93 16 2 N -0.45 -3.54 3.15 -121.28 -0.38 -3.92 16 3 C -0.06 -0.43 11.58 -16.56 -0.19 -0.62 16 4 C -0.03 -0.26 11.87 -17.82 -0.21 -0.47 16 5 N -0.49 -5.42 11.13 -10.82 -0.12 -5.54 16 6 C 0.18 1.70 5.58 -155.42 -0.87 0.83 16 7 C 0.20 1.69 2.83 -27.88 -0.08 1.61 16 8 H 0.11 0.79 7.08 -51.93 -0.37 0.42 16 9 O -0.54 -4.92 12.70 -35.23 -0.45 -5.37 16 10 C -0.11 -0.95 2.01 -90.50 -0.18 -1.13 16 11 C -0.10 -0.89 5.20 -26.65 -0.14 -1.02 16 12 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 13 N -0.54 -6.38 4.66 -234.66 -1.09 -7.47 16 14 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 15 C -0.09 -1.52 5.15 -26.73 -0.14 -1.66 16 16 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 17 S -0.13 -3.51 21.44 -107.50 -2.30 -5.82 16 18 C -0.52 -14.86 9.50 30.94 0.29 -14.57 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 21 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.05 0.62 5.29 -3.83 -0.02 0.60 16 27 C -0.11 -0.99 4.93 -26.66 -0.13 -1.12 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.37 6.52 -51.93 -0.34 0.03 16 31 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.39 2.88 8.93 45.56 0.41 3.29 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.58 7.76 -51.93 -0.40 0.18 16 37 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 40 H 0.07 0.97 7.99 -51.93 -0.41 0.55 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.06 6.43 -51.93 -0.33 0.72 16 43 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 44 H 0.06 1.22 8.14 -51.91 -0.42 0.79 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 1.03 6.21 -51.93 -0.32 0.71 16 48 H 0.07 0.62 7.50 -51.93 -0.39 0.23 16 49 H 0.06 0.61 7.33 -51.93 -0.38 0.23 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -34.05 400.85 -11.12 -45.17 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.58 Total: 1.11 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.95 Total: -15.46 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.86 Total: -42.27 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.45 Total: -5.37 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.05 -11.12 -45.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136207184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.158 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds