Wall clock time and date at job start Tue Mar 31 2020 23:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36888 * 126.39598 * 2 1 4 4 C 1.34663 * 106.81769 * 179.97438 * 3 2 1 5 5 N 1.34122 * 108.02267 * 359.77678 * 4 3 2 6 6 C 1.30501 * 109.25511 * 0.37369 * 5 4 3 7 7 C 1.50703 * 125.65197 * 179.89697 * 6 5 4 8 8 H 1.09000 * 109.47253 * 164.68492 * 7 6 5 9 9 O 1.42902 * 109.47137 * 44.68765 * 7 6 5 10 10 C 1.53005 * 109.47002 * 284.68658 * 7 6 5 11 11 C 1.53120 * 109.52011 * 179.97438 * 10 7 6 12 12 C 1.53045 * 109.27382 * 177.62403 * 11 10 7 13 13 N 1.46844 * 109.52143 * 300.82250 * 12 11 10 14 14 C 1.46906 * 110.99887 * 185.83959 * 13 12 11 15 15 C 1.53000 * 109.47072 * 170.00138 * 14 13 12 16 16 C 1.52996 * 109.47188 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.47516 * 179.97438 * 16 15 14 18 18 C 1.76197 * 100.00143 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00081 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99891 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99891 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99828 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47655 * 90.00140 * 22 20 18 24 24 H 1.48506 * 109.47080 * 210.00020 * 22 20 18 25 25 H 1.48505 * 109.47289 * 329.99494 * 22 20 18 26 26 C 1.46853 * 111.20068 * 61.74346 * 13 12 11 27 27 C 1.53033 * 109.52262 * 298.25891 * 26 13 12 28 28 H 1.09000 * 109.47809 * 270.02950 * 1 2 3 29 29 H 1.08998 * 109.47155 * 30.03108 * 1 2 3 30 30 H 1.09000 * 109.46858 * 150.02427 * 1 2 3 31 31 H 1.07998 * 126.59172 * 0.02562 * 3 2 1 32 32 H 1.08007 * 125.99345 * 179.97438 * 4 3 2 33 33 H 0.96710 * 113.99994 * 299.99876 * 9 7 6 34 34 H 1.09005 * 109.51916 * 59.87580 * 10 7 6 35 35 H 1.08996 * 109.49890 * 57.68876 * 11 10 7 36 36 H 1.08994 * 109.50831 * 297.56339 * 11 10 7 37 37 H 1.09000 * 109.46052 * 180.80838 * 12 11 10 38 38 H 1.08998 * 109.45499 * 60.82968 * 12 11 10 39 39 H 1.08993 * 109.47164 * 289.99991 * 14 13 12 40 40 H 1.08996 * 109.46920 * 50.00025 * 14 13 12 41 41 H 1.09002 * 109.46936 * 299.99708 * 15 14 13 42 42 H 1.08996 * 109.47340 * 60.00144 * 15 14 13 43 43 H 1.08999 * 109.47452 * 300.00348 * 16 15 14 44 44 H 1.09012 * 109.47215 * 59.99738 * 16 15 14 45 45 H 0.97000 * 119.99775 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46125 * 58.27453 * 26 13 12 47 47 H 1.09003 * 109.46462 * 178.23846 * 26 13 12 48 48 H 1.09007 * 109.50330 * 299.23709 * 27 26 13 49 49 H 1.08999 * 109.53502 * 179.13924 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6506 0.0006 5 7 3.5096 -0.6901 0.0059 6 6 2.2663 -1.0869 0.0006 7 6 1.8018 -2.5205 0.0017 8 1 0.7456 -2.5601 0.2679 9 8 2.5615 -3.2666 0.9548 10 6 1.9996 -3.1218 -1.3913 11 6 1.5286 -4.5787 -1.3913 12 6 1.6735 -5.1565 -2.8011 13 7 0.8709 -4.3637 -3.7412 14 6 0.8752 -4.9707 -5.0790 15 6 -0.1594 -4.2686 -5.9608 16 6 -0.1554 -4.9011 -7.3539 17 16 -1.3798 -4.0712 -8.3970 18 6 -1.1674 -4.9736 -9.8953 19 1 -0.4403 -5.7704 -9.9474 20 6 -1.9354 -4.6611 -11.0085 21 7 -2.8228 -3.6910 -10.9446 22 14 -1.7108 -5.6183 -12.5968 23 1 -2.6250 -6.7885 -12.6032 24 1 -2.0232 -4.7398 -13.7526 25 1 -0.3054 -6.0876 -12.6974 26 6 1.3355 -2.9716 -3.7934 27 6 1.1806 -2.3287 -2.4133 28 1 -0.3635 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9612 2.1346 0.0004 32 1 4.4368 1.2612 0.0003 33 1 3.5126 -3.2750 0.7800 34 1 3.0554 -3.0806 -1.6592 35 1 0.4833 -4.6232 -1.0855 36 1 2.1367 -5.1578 -0.6965 37 1 1.3255 -6.1894 -2.8078 38 1 2.7209 -5.1241 -3.1008 39 1 1.8645 -4.8630 -5.5236 40 1 0.6262 -6.0287 -4.9987 41 1 -1.1487 -4.3763 -5.5162 42 1 0.0897 -3.2106 -6.0411 43 1 0.8339 -4.7939 -7.7988 44 1 -0.4047 -5.9593 -7.2733 45 1 -3.3592 -3.4724 -11.7226 46 1 2.3845 -2.9497 -4.0886 47 1 0.7421 -2.4177 -4.5208 48 1 0.1298 -2.3378 -2.1235 49 1 1.5396 -1.3001 -2.4481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136207184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:08 Heat of formation + Delta-G solvation = -26.971724 kcal Electronic energy + Delta-G solvation = -27020.538026 eV Core-core repulsion = 23301.044624 eV Total energy + Delta-G solvation = -3719.493402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.12679 -40.39111 -38.21588 -35.75337 -34.92782 -34.60837 -33.27030 -31.79577 -30.88878 -28.37502 -27.88424 -27.56765 -25.86431 -24.28932 -23.56399 -22.34481 -21.87078 -20.89551 -20.76415 -19.55432 -18.47747 -17.59229 -16.99528 -16.90054 -16.58564 -16.50656 -16.20699 -15.87470 -15.73318 -15.49937 -15.13827 -14.89490 -14.71713 -14.36299 -14.25196 -14.04437 -13.69857 -13.67595 -13.53037 -13.47441 -13.21375 -12.98597 -12.86324 -12.80911 -12.55134 -12.32441 -12.17746 -12.07244 -11.82800 -11.54182 -11.43799 -11.20898 -11.14553 -11.05519 -10.92685 -10.54609 -10.32128 -9.35816 -9.28593 -8.66881 -8.37857 -6.13921 1.06067 1.31011 1.38913 1.48095 1.74144 1.87941 2.12429 2.27869 2.89971 2.96267 3.20334 3.32435 3.42840 3.65879 3.72282 3.83991 3.94353 4.00705 4.04826 4.19732 4.24460 4.31429 4.36498 4.37971 4.40411 4.49571 4.50947 4.59925 4.60880 4.69176 4.72273 4.75345 4.77390 4.81932 4.88184 4.95131 5.01037 5.11917 5.18394 5.21662 5.31207 5.33820 5.39290 5.44084 5.83065 6.08673 6.17700 6.18212 6.20096 6.59357 7.04372 7.10540 8.71542 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.001904 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.009744 B =14698.518538 C =15503.611972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.452 5.452 3 C -0.049 4.049 4 C -0.059 4.059 5 N -0.519 5.519 6 C 0.162 3.838 7 C 0.210 3.790 8 H 0.121 0.879 9 O -0.553 6.553 10 C -0.101 4.101 11 C -0.097 4.097 12 C 0.054 3.946 13 N -0.539 5.539 14 C 0.070 3.930 15 C -0.080 4.080 16 C -0.088 4.088 17 S -0.197 6.197 18 C -0.538 4.538 19 H 0.072 0.928 20 C 0.014 3.986 21 N -0.907 5.907 22 Si 0.994 3.006 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.264 1.264 26 C 0.054 3.946 27 C -0.097 4.097 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.205 0.795 32 H 0.181 0.819 33 H 0.391 0.609 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.029 0.971 39 H 0.031 0.969 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.271 0.729 46 H 0.023 0.977 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.384 5.669 26.215 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.135 5.135 3 C -0.183 4.183 4 C -0.206 4.206 5 N -0.239 5.239 6 C -0.101 4.101 7 C 0.148 3.852 8 H 0.139 0.861 9 O -0.359 6.359 10 C -0.121 4.121 11 C -0.135 4.135 12 C -0.074 4.074 13 N -0.264 5.264 14 C -0.060 4.060 15 C -0.119 4.119 16 C -0.237 4.237 17 S 0.032 5.968 18 C -0.686 4.686 19 H 0.090 0.910 20 C -0.191 4.191 21 N -0.543 5.543 22 Si 0.816 3.184 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.188 1.188 26 C -0.074 4.074 27 C -0.135 4.135 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.222 0.778 32 H 0.198 0.802 33 H 0.240 0.760 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.986 6.010 26.815 28.617 hybrid contribution 1.636 -0.404 -2.098 2.690 sum 9.622 5.606 24.717 27.110 Atomic orbital electron populations 1.22448 0.74517 1.06416 1.05131 1.45474 1.08885 1.05996 1.53097 1.23256 0.90886 0.93856 1.10274 1.22669 0.97972 0.90850 1.09150 1.70015 1.19653 1.13424 1.20806 1.24278 0.86452 0.92700 1.06668 1.20166 0.96069 0.80031 0.88904 0.86135 1.86518 1.24507 1.72618 1.52238 1.21761 1.00387 0.96242 0.93683 1.21502 1.02670 0.93876 0.95411 1.22158 0.94912 0.97795 0.92492 1.61932 1.54215 1.02215 1.08042 1.21987 0.96952 0.99066 0.87966 1.21149 1.00239 0.99248 0.91250 1.23159 1.00390 1.01919 0.98241 1.84608 1.51455 1.50696 1.10071 1.23037 1.26195 1.21652 0.97710 0.90993 1.26075 0.93966 0.96327 1.02689 1.70154 1.22701 1.29691 1.31791 0.85015 0.79048 0.78000 0.76336 1.19207 1.19887 1.18808 1.22088 0.97675 0.89570 0.98068 1.21466 1.00896 0.97701 0.93406 0.88920 0.87477 0.88609 0.77831 0.80234 0.75955 0.91577 0.90593 0.89759 0.89766 0.95290 0.95064 0.89901 0.91330 0.92145 0.92354 0.91774 0.91960 0.95833 0.91074 0.90165 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.75 127.77 1.37 1.76 16 2 N -0.45 -6.41 3.15 -537.63 -1.69 -8.10 16 3 C -0.05 -0.69 11.58 83.08 0.96 0.28 16 4 C -0.06 -1.09 11.87 83.52 0.99 -0.09 16 5 N -0.52 -11.51 11.13 -188.13 -2.09 -13.60 16 6 C 0.16 2.96 5.58 138.13 0.77 3.73 16 7 C 0.21 3.22 2.83 29.85 0.08 3.30 16 8 H 0.12 1.52 7.08 -2.39 -0.02 1.50 16 9 O -0.55 -9.42 12.70 -148.98 -1.89 -11.31 16 10 C -0.10 -1.60 2.01 -10.71 -0.02 -1.63 16 11 C -0.10 -1.47 5.20 30.65 0.16 -1.31 16 12 C 0.05 0.99 5.46 86.33 0.47 1.46 16 13 N -0.54 -12.08 4.66 -896.34 -4.17 -16.26 16 14 C 0.07 1.79 4.96 86.30 0.43 2.22 16 15 C -0.08 -2.58 5.15 30.59 0.16 -2.42 16 16 C -0.09 -3.54 5.67 71.98 0.41 -3.13 16 17 S -0.20 -10.56 21.44 -56.49 -1.21 -11.77 16 18 C -0.54 -31.31 9.50 67.95 0.65 -30.66 16 19 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 20 C 0.01 0.82 5.49 84.86 0.47 1.29 16 21 N -0.91 -54.92 13.22 21.65 0.29 -54.63 16 22 Si 0.99 44.08 29.55 68.60 2.03 46.10 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 C 0.05 1.19 5.29 86.32 0.46 1.65 16 27 C -0.10 -1.69 4.93 30.64 0.15 -1.54 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.57 6.52 -2.39 -0.02 0.56 16 31 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.39 5.67 8.93 -74.05 -0.66 5.01 16 34 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.15 7.76 -2.39 -0.02 1.13 16 37 H 0.08 1.43 8.02 -2.39 -0.02 1.41 16 38 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 40 H 0.08 2.00 7.99 -2.39 -0.02 1.98 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 1.99 6.43 -2.39 -0.02 1.98 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.07 1.74 6.21 -2.39 -0.01 1.73 16 48 H 0.08 1.26 7.50 -2.38 -0.02 1.24 16 49 H 0.06 1.08 7.33 -2.39 -0.02 1.06 16 Total: -1.00 -73.74 400.85 -0.98 -74.72 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.27 Total: 19.94 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 7.51 Total: -25.10 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -7.68 Total: -92.59 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -1.89 Total: -11.31 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.21 Total: -11.77 kcal Total: -73.74 -0.98 -74.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136207184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.746 kcal (2) G-P(sol) polarization free energy of solvation -73.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds