Wall clock time and date at job start Tue Mar 31 2020 23:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36881 * 126.39839 * 2 1 4 4 C 1.34667 * 106.81795 * 180.25088 * 3 2 1 5 5 N 1.34131 * 108.01692 * 359.74161 * 4 3 2 6 6 C 1.30493 * 109.25737 * 0.02562 * 5 4 3 7 7 C 1.50709 * 125.64894 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.46872 * 195.02202 * 7 6 5 9 9 O 1.42893 * 109.46980 * 315.02146 * 7 6 5 10 10 C 1.53004 * 109.46903 * 75.02103 * 7 6 5 11 11 C 1.53110 * 109.52133 * 179.97438 * 10 7 6 12 12 C 1.53032 * 109.27921 * 177.55861 * 11 10 7 13 13 N 1.46852 * 109.52437 * 300.82148 * 12 11 10 14 14 C 1.46902 * 110.99971 * 185.83517 * 13 12 11 15 15 C 1.53001 * 109.46901 * 169.99744 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 S 1.81002 * 109.47004 * 180.02562 * 16 15 14 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.46848 * 111.19424 * 61.74147 * 13 12 11 27 27 C 1.53034 * 109.52086 * 298.25597 * 26 13 12 28 28 H 1.09004 * 109.47547 * 270.18986 * 1 2 3 29 29 H 1.09002 * 109.47096 * 30.18479 * 1 2 3 30 30 H 1.09001 * 109.47601 * 150.19175 * 1 2 3 31 31 H 1.08000 * 126.58940 * 359.97438 * 3 2 1 32 32 H 1.07991 * 125.98745 * 179.71965 * 4 3 2 33 33 H 0.96701 * 114.00194 * 60.00173 * 9 7 6 34 34 H 1.08996 * 109.57297 * 59.84121 * 10 7 6 35 35 H 1.09000 * 109.50668 * 57.61727 * 11 10 7 36 36 H 1.08999 * 109.50680 * 297.50440 * 11 10 7 37 37 H 1.08999 * 109.46700 * 180.80460 * 12 11 10 38 38 H 1.09001 * 109.45697 * 60.83587 * 12 11 10 39 39 H 1.09001 * 109.46712 * 50.00147 * 14 13 12 40 40 H 1.09002 * 109.47411 * 290.00258 * 14 13 12 41 41 H 1.09001 * 109.46652 * 60.00371 * 15 14 13 42 42 H 1.08992 * 109.47514 * 300.00460 * 15 14 13 43 43 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 44 44 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 45 45 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.46425 * 58.27501 * 26 13 12 47 47 H 1.09002 * 109.45789 * 178.23868 * 26 13 12 48 48 H 1.08996 * 109.50601 * 299.24170 * 27 26 13 49 49 H 1.09001 * 109.53076 * 179.14445 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0056 5 7 3.5095 -0.6903 -0.0032 6 6 2.2663 -1.0870 0.0031 7 6 1.8017 -2.5206 0.0071 8 1 0.7443 -2.5606 -0.2542 9 8 2.5570 -3.2687 -0.9478 10 6 2.0058 -3.1190 1.4004 11 6 1.5336 -4.5754 1.4060 12 6 1.7962 -5.1865 2.7842 13 7 3.2317 -5.1174 3.0862 14 6 3.5403 -5.8185 4.3397 15 6 5.0574 -5.9423 4.4946 16 6 5.3787 -6.6730 5.7999 17 16 7.1735 -6.8188 5.9836 18 6 7.2552 -7.6737 7.5221 19 1 6.3461 -7.9388 8.0415 20 6 8.4879 -8.0054 8.0671 21 7 9.5957 -7.6818 7.4344 22 14 8.5745 -8.9111 9.6986 23 1 7.1991 -9.1561 10.2024 24 1 9.2708 -10.2088 9.5080 25 1 9.3222 -8.0879 10.6827 26 6 3.6980 -3.7257 3.1330 27 6 3.4921 -3.0712 1.7651 28 1 -0.3634 0.0034 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3634 -0.8917 -0.5108 31 1 1.9613 2.1345 -0.0004 32 1 4.4367 1.2611 -0.0115 33 1 3.5088 -3.2767 -0.7773 34 1 1.4326 -2.5478 2.1306 35 1 2.0794 -5.1379 0.6485 36 1 0.4661 -4.6128 1.1887 37 1 1.4742 -6.2278 2.7872 38 1 1.2391 -4.6320 3.5394 39 1 3.0948 -6.8131 4.3189 40 1 3.1339 -5.2559 5.1802 41 1 5.5028 -4.9476 4.5155 42 1 5.4638 -6.5048 3.6542 43 1 4.9723 -6.1108 6.6407 44 1 4.9334 -7.6677 5.7786 45 1 10.4573 -7.9140 7.8151 46 1 3.1320 -3.1782 3.8866 47 1 4.7573 -3.7061 3.3894 48 1 4.0688 -3.6099 1.0134 49 1 3.8241 -2.0337 1.8039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136207225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:12 Heat of formation + Delta-G solvation = 0.867575 kcal Electronic energy + Delta-G solvation = -26997.736932 eV Core-core repulsion = 23279.450733 eV Total energy + Delta-G solvation = -3718.286199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.53165 -39.60311 -37.35572 -34.48882 -34.40636 -32.40373 -32.03305 -30.91329 -30.21887 -27.73268 -27.05470 -25.65478 -24.78548 -23.48593 -22.47993 -21.66762 -20.58984 -20.25218 -19.71014 -17.96818 -17.42024 -16.80885 -16.07187 -15.90320 -15.59459 -15.21396 -15.14787 -14.77124 -14.60153 -14.23110 -14.08881 -13.94112 -13.82351 -13.61825 -13.25258 -13.18025 -13.01532 -12.82466 -12.31882 -12.28453 -11.91356 -11.57605 -11.34653 -11.28511 -11.14805 -11.05084 -10.87485 -10.74825 -10.63091 -10.53479 -10.42355 -10.12685 -10.06284 -9.90993 -9.46283 -9.02813 -8.73966 -8.25730 -8.22840 -6.47434 -6.18853 -3.88360 1.63503 2.33723 2.79861 3.23396 3.24869 3.32418 3.58868 3.84739 3.98756 4.08074 4.23192 4.26619 4.28984 4.44198 4.56508 4.58475 4.76082 4.81973 4.97268 5.11044 5.13713 5.16978 5.17748 5.26486 5.35104 5.40125 5.43217 5.48257 5.52448 5.62982 5.68995 5.78034 5.84325 5.86077 5.94851 5.95238 6.02892 6.11597 6.20203 6.28859 6.41944 6.43830 6.66993 6.74142 6.82676 7.17236 7.19079 7.29606 7.64626 7.75104 8.40817 9.27399 10.89359 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.001852 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.500181 B =15114.763383 C =15719.778394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.455 5.455 3 C -0.060 4.060 4 C -0.024 4.024 5 N -0.476 5.476 6 C 0.175 3.825 7 C 0.204 3.796 8 H 0.105 0.895 9 O -0.544 6.544 10 C -0.111 4.111 11 C -0.105 4.105 12 C 0.057 3.943 13 N -0.535 5.535 14 C 0.061 3.939 15 C -0.093 4.093 16 C -0.112 4.112 17 S -0.132 6.132 18 C -0.515 4.515 19 H 0.072 0.928 20 C 0.070 3.930 21 N -0.869 5.869 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.054 3.946 27 C -0.112 4.112 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.389 0.611 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.266 0.734 46 H 0.027 0.973 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.623 16.730 -16.661 32.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.139 5.139 3 C -0.192 4.192 4 C -0.173 4.173 5 N -0.195 5.195 6 C -0.088 4.088 7 C 0.142 3.858 8 H 0.123 0.877 9 O -0.350 6.350 10 C -0.131 4.131 11 C -0.143 4.143 12 C -0.071 4.071 13 N -0.260 5.260 14 C -0.068 4.068 15 C -0.132 4.132 16 C -0.261 4.261 17 S 0.096 5.904 18 C -0.663 4.663 19 H 0.090 0.910 20 C -0.139 4.139 21 N -0.505 5.505 22 Si 0.745 3.255 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.074 4.074 27 C -0.149 4.149 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.191 0.809 32 H 0.189 0.811 33 H 0.240 0.760 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.390 16.219 -17.984 32.311 hybrid contribution -1.574 0.387 2.885 3.309 sum -22.965 16.605 -15.099 32.111 Atomic orbital electron populations 1.22101 0.76746 1.04848 1.03816 1.45261 1.07534 1.06610 1.54509 1.22741 0.91438 0.92501 1.12560 1.22352 0.96494 0.91130 1.07299 1.70159 1.18121 1.12103 1.19153 1.24233 0.86465 0.91853 1.06215 1.20102 0.95387 0.80541 0.89787 0.87727 1.86517 1.24499 1.72221 1.51751 1.21821 0.98805 0.97104 0.95384 1.21555 1.00499 0.94372 0.97898 1.22050 0.88447 1.00703 0.95947 1.61935 1.15159 1.14502 1.34421 1.22164 0.97436 0.98236 0.88983 1.21282 0.93572 1.01017 0.97343 1.23234 1.02788 1.01477 0.98644 1.84647 0.98737 1.76276 1.30741 1.22739 0.95195 1.42224 1.06183 0.90978 1.25020 0.94816 0.95821 0.98240 1.70038 0.97531 1.44654 1.38269 0.86118 0.78258 0.79146 0.82014 1.19655 1.20574 1.20623 1.22137 1.01340 0.87679 0.96209 1.21666 0.94334 1.01663 0.97279 0.90273 0.89382 0.89367 0.80865 0.81145 0.76024 0.91097 0.89835 0.91846 0.90651 0.95478 0.90908 0.95218 0.91688 0.90716 0.92485 0.92182 0.92399 0.95520 0.89741 0.90785 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 10.93 59.85 0.65 0.88 16 2 N -0.46 -3.36 3.15 -121.27 -0.38 -3.74 16 3 C -0.06 -0.44 11.58 -16.56 -0.19 -0.63 16 4 C -0.02 -0.23 11.87 -17.81 -0.21 -0.44 16 5 N -0.48 -5.30 9.40 -10.82 -0.10 -5.40 16 6 C 0.17 1.65 6.27 -155.42 -0.97 0.68 16 7 C 0.20 1.68 3.16 -27.88 -0.09 1.59 16 8 H 0.11 0.67 6.74 -51.93 -0.35 0.32 16 9 O -0.54 -5.37 12.57 -35.23 -0.44 -5.81 16 10 C -0.11 -0.96 2.14 -90.50 -0.19 -1.15 16 11 C -0.11 -0.91 5.26 -26.66 -0.14 -1.05 16 12 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 13 N -0.54 -6.73 4.66 -234.66 -1.09 -7.82 16 14 C 0.06 0.85 4.96 -3.82 -0.02 0.83 16 15 C -0.09 -1.59 5.15 -26.73 -0.14 -1.73 16 16 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 17 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 18 C -0.52 -15.06 9.50 30.94 0.29 -14.77 16 19 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 20 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 22 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.05 0.66 5.29 -3.83 -0.02 0.64 16 27 C -0.11 -1.18 4.66 -26.65 -0.12 -1.30 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.20 6.92 -51.93 -0.36 -0.16 16 31 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.39 3.64 7.17 45.56 0.33 3.97 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.83 7.62 -51.93 -0.40 0.43 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.74 8.02 -51.93 -0.42 0.33 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 40 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 41 H 0.06 1.13 6.43 -51.93 -0.33 0.79 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 44 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 1.14 6.21 -51.93 -0.32 0.82 16 48 H 0.07 0.82 6.66 -51.93 -0.35 0.47 16 49 H 0.08 0.95 6.24 -51.93 -0.32 0.62 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -34.52 396.31 -11.25 -45.77 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.55 Total: 1.79 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.06 Total: -16.10 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.84 Total: -42.61 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.44 Total: -5.81 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.52 -11.25 -45.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136207225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.639 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds