Wall clock time and date at job start Tue Mar 31 2020 23:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36881 * 126.39839 * 2 1 4 4 C 1.34667 * 106.81795 * 180.25088 * 3 2 1 5 5 N 1.34131 * 108.01692 * 359.74161 * 4 3 2 6 6 C 1.30493 * 109.25737 * 0.02562 * 5 4 3 7 7 C 1.50709 * 125.64894 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.46872 * 195.02202 * 7 6 5 9 9 O 1.42893 * 109.46980 * 315.02146 * 7 6 5 10 10 C 1.53004 * 109.46903 * 75.02103 * 7 6 5 11 11 C 1.53110 * 109.52133 * 179.97438 * 10 7 6 12 12 C 1.53032 * 109.27921 * 177.55861 * 11 10 7 13 13 N 1.46852 * 109.52437 * 300.82148 * 12 11 10 14 14 C 1.46902 * 110.99971 * 185.83517 * 13 12 11 15 15 C 1.53001 * 109.46901 * 169.99744 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 S 1.81002 * 109.47004 * 180.02562 * 16 15 14 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.46848 * 111.19424 * 61.74147 * 13 12 11 27 27 C 1.53034 * 109.52086 * 298.25597 * 26 13 12 28 28 H 1.09004 * 109.47547 * 270.18986 * 1 2 3 29 29 H 1.09002 * 109.47096 * 30.18479 * 1 2 3 30 30 H 1.09001 * 109.47601 * 150.19175 * 1 2 3 31 31 H 1.08000 * 126.58940 * 359.97438 * 3 2 1 32 32 H 1.07991 * 125.98745 * 179.71965 * 4 3 2 33 33 H 0.96701 * 114.00194 * 60.00173 * 9 7 6 34 34 H 1.08996 * 109.57297 * 59.84121 * 10 7 6 35 35 H 1.09000 * 109.50668 * 57.61727 * 11 10 7 36 36 H 1.08999 * 109.50680 * 297.50440 * 11 10 7 37 37 H 1.08999 * 109.46700 * 180.80460 * 12 11 10 38 38 H 1.09001 * 109.45697 * 60.83587 * 12 11 10 39 39 H 1.09001 * 109.46712 * 50.00147 * 14 13 12 40 40 H 1.09002 * 109.47411 * 290.00258 * 14 13 12 41 41 H 1.09001 * 109.46652 * 60.00371 * 15 14 13 42 42 H 1.08992 * 109.47514 * 300.00460 * 15 14 13 43 43 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 44 44 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 45 45 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.46425 * 58.27501 * 26 13 12 47 47 H 1.09002 * 109.45789 * 178.23868 * 26 13 12 48 48 H 1.08996 * 109.50601 * 299.24170 * 27 26 13 49 49 H 1.09001 * 109.53076 * 179.14445 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0056 5 7 3.5095 -0.6903 -0.0032 6 6 2.2663 -1.0870 0.0031 7 6 1.8017 -2.5206 0.0071 8 1 0.7443 -2.5606 -0.2542 9 8 2.5570 -3.2687 -0.9478 10 6 2.0058 -3.1190 1.4004 11 6 1.5336 -4.5754 1.4060 12 6 1.7962 -5.1865 2.7842 13 7 3.2317 -5.1174 3.0862 14 6 3.5403 -5.8185 4.3397 15 6 5.0574 -5.9423 4.4946 16 6 5.3787 -6.6730 5.7999 17 16 7.1735 -6.8188 5.9836 18 6 7.2552 -7.6737 7.5221 19 1 6.3461 -7.9388 8.0415 20 6 8.4879 -8.0054 8.0671 21 7 9.5957 -7.6818 7.4344 22 14 8.5745 -8.9111 9.6986 23 1 7.1991 -9.1561 10.2024 24 1 9.2708 -10.2088 9.5080 25 1 9.3222 -8.0879 10.6827 26 6 3.6980 -3.7257 3.1330 27 6 3.4921 -3.0712 1.7651 28 1 -0.3634 0.0034 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3634 -0.8917 -0.5108 31 1 1.9613 2.1345 -0.0004 32 1 4.4367 1.2611 -0.0115 33 1 3.5088 -3.2767 -0.7773 34 1 1.4326 -2.5478 2.1306 35 1 2.0794 -5.1379 0.6485 36 1 0.4661 -4.6128 1.1887 37 1 1.4742 -6.2278 2.7872 38 1 1.2391 -4.6320 3.5394 39 1 3.0948 -6.8131 4.3189 40 1 3.1339 -5.2559 5.1802 41 1 5.5028 -4.9476 4.5155 42 1 5.4638 -6.5048 3.6542 43 1 4.9723 -6.1108 6.6407 44 1 4.9334 -7.6677 5.7786 45 1 10.4573 -7.9140 7.8151 46 1 3.1320 -3.1782 3.8866 47 1 4.7573 -3.7061 3.3894 48 1 4.0688 -3.6099 1.0134 49 1 3.8241 -2.0337 1.8039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136207225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:11 Heat of formation + Delta-G solvation = -22.102925 kcal Electronic energy + Delta-G solvation = -26998.733008 eV Core-core repulsion = 23279.450733 eV Total energy + Delta-G solvation = -3719.282275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.11270 -40.44380 -38.20495 -35.53142 -34.94696 -34.60608 -33.12358 -31.78316 -30.95257 -28.40497 -27.87555 -27.57176 -25.94755 -24.40827 -23.42129 -22.26464 -21.86138 -20.89280 -20.50116 -19.55462 -18.53256 -17.54408 -16.90239 -16.83498 -16.61442 -16.55614 -16.20310 -15.88498 -15.80414 -15.60353 -15.17082 -14.73903 -14.71201 -14.34849 -14.30260 -13.89855 -13.71002 -13.64662 -13.49933 -13.42759 -13.19388 -12.95968 -12.80570 -12.75146 -12.52393 -12.30574 -12.18562 -11.95993 -11.79119 -11.56926 -11.41432 -11.23362 -11.15681 -10.98649 -10.80094 -10.49037 -10.30849 -9.34940 -9.23881 -8.67062 -8.37441 -6.13938 1.06821 1.31068 1.38206 1.49329 1.74519 1.89242 2.14246 2.28075 2.93925 2.96527 3.23558 3.33155 3.51742 3.67750 3.69925 3.91664 3.94632 3.99102 4.06815 4.21780 4.28659 4.32002 4.36143 4.40767 4.44679 4.50640 4.54250 4.58557 4.67294 4.69737 4.72585 4.75944 4.80640 4.85310 4.90948 4.97906 5.06797 5.19979 5.20342 5.28681 5.31923 5.36963 5.39554 5.51200 5.84869 6.12850 6.18176 6.22279 6.24008 6.57733 7.04443 7.14016 8.72295 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.001852 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.500181 B =15114.763383 C =15719.778394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.454 5.454 3 C -0.048 4.048 4 C -0.062 4.062 5 N -0.512 5.512 6 C 0.157 3.843 7 C 0.207 3.793 8 H 0.130 0.870 9 O -0.556 6.556 10 C -0.101 4.101 11 C -0.099 4.099 12 C 0.055 3.945 13 N -0.544 5.544 14 C 0.071 3.929 15 C -0.082 4.082 16 C -0.086 4.086 17 S -0.201 6.201 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.908 5.908 22 Si 0.997 3.003 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.056 3.944 27 C -0.102 4.102 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.206 0.794 32 H 0.177 0.823 33 H 0.387 0.613 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.271 0.729 46 H 0.027 0.973 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.723 16.992 -16.339 34.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.137 5.137 3 C -0.181 4.181 4 C -0.209 4.209 5 N -0.232 5.232 6 C -0.106 4.106 7 C 0.146 3.854 8 H 0.147 0.853 9 O -0.362 6.362 10 C -0.121 4.121 11 C -0.137 4.137 12 C -0.073 4.073 13 N -0.269 5.269 14 C -0.058 4.058 15 C -0.120 4.120 16 C -0.235 4.235 17 S 0.028 5.972 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.818 3.182 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.072 4.072 27 C -0.140 4.140 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.223 0.777 32 H 0.194 0.806 33 H 0.238 0.762 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.523 16.486 -17.677 34.433 hybrid contribution -0.659 0.392 2.715 2.822 sum -25.182 16.878 -14.962 33.806 Atomic orbital electron populations 1.22444 0.74232 1.06488 1.05144 1.45519 1.09074 1.05876 1.53262 1.23232 0.90801 0.93839 1.10276 1.22688 0.98042 0.90997 1.09219 1.70074 1.19722 1.13231 1.20208 1.24358 0.86519 0.92746 1.06974 1.20224 0.96253 0.79841 0.89062 0.85268 1.86493 1.24557 1.72617 1.52501 1.21724 0.96999 0.97432 0.95936 1.21519 1.01981 0.93696 0.96454 1.22159 0.86606 1.01529 0.96987 1.61901 1.17214 1.14405 1.33394 1.21972 0.94605 0.99183 0.90042 1.21157 0.96178 0.99828 0.94878 1.23147 0.97484 1.02280 1.00620 1.84699 1.05240 1.76451 1.30837 1.23072 0.95703 1.42819 1.06881 0.90893 1.26113 0.94190 0.96479 1.02434 1.70173 0.98271 1.45692 1.40283 0.84933 0.78758 0.77807 0.76652 1.18598 1.19601 1.19673 1.22086 1.00067 0.87848 0.97175 1.21521 0.96081 1.00422 0.95975 0.89041 0.87411 0.88216 0.77687 0.80603 0.76210 0.90416 0.91114 0.89111 0.89927 0.94746 0.89904 0.94824 0.92358 0.91704 0.92175 0.91711 0.91970 0.95444 0.91871 0.91784 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 10.93 127.77 1.40 1.59 16 2 N -0.45 -5.80 3.15 -537.60 -1.69 -7.49 16 3 C -0.05 -0.63 11.58 83.09 0.96 0.33 16 4 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 5 N -0.51 -11.63 9.40 -188.14 -1.77 -13.40 16 6 C 0.16 2.82 6.27 138.13 0.87 3.69 16 7 C 0.21 3.11 3.16 29.85 0.09 3.20 16 8 H 0.13 1.26 6.74 -2.39 -0.02 1.24 16 9 O -0.56 -10.68 12.57 -148.98 -1.87 -12.55 16 10 C -0.10 -1.59 2.14 -10.72 -0.02 -1.61 16 11 C -0.10 -1.48 5.26 30.64 0.16 -1.32 16 12 C 0.05 1.00 5.46 86.32 0.47 1.47 16 13 N -0.54 -13.18 4.66 -896.34 -4.17 -17.35 16 14 C 0.07 1.93 4.96 86.30 0.43 2.35 16 15 C -0.08 -2.80 5.15 30.59 0.16 -2.64 16 16 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 17 S -0.20 -11.09 21.44 -56.49 -1.21 -12.30 16 18 C -0.54 -31.79 9.50 67.96 0.65 -31.15 16 19 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 22 Si 1.00 44.75 29.55 68.60 2.03 46.78 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 C 0.06 1.37 5.29 86.32 0.46 1.83 16 27 C -0.10 -2.18 4.66 30.64 0.14 -2.03 16 28 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.10 0.12 6.92 -2.39 -0.02 0.10 16 31 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.18 2.75 8.06 -2.92 -0.02 2.73 16 33 H 0.39 7.53 7.17 -74.06 -0.53 7.00 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.29 7.62 -2.39 -0.02 1.27 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.41 8.02 -2.39 -0.02 1.39 16 38 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 2.09 7.99 -2.39 -0.02 2.07 16 40 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 41 H 0.06 2.08 6.43 -2.39 -0.02 2.07 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 46 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.06 1.79 6.21 -2.39 -0.01 1.77 16 48 H 0.06 1.48 6.66 -2.39 -0.02 1.46 16 49 H 0.07 1.67 6.24 -2.39 -0.01 1.66 16 Total: -1.00 -76.36 396.31 -0.38 -76.74 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.41 Total: 21.73 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 7.63 Total: -26.44 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -7.35 Total: -93.95 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.87 Total: -12.55 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -11.09 SS G_CDS: -1.21 Total: -12.30 kcal Total: -76.36 -0.38 -76.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136207225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.638 kcal (2) G-P(sol) polarization free energy of solvation -76.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds