Wall clock time and date at job start Tue Mar 31 2020 22:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46909 * 109.47063 * 2 1 4 4 C 1.46895 * 110.99853 * 300.02338 * 3 2 1 5 5 C 1.52996 * 109.47185 * 291.82032 * 4 3 2 6 6 C 1.46905 * 110.99609 * 63.97563 * 3 2 1 7 7 C 1.53003 * 109.47431 * 66.04817 * 6 3 2 8 8 N 1.46893 * 109.47136 * 176.97547 * 7 6 3 9 9 C 1.46891 * 111.00331 * 76.36541 * 8 7 6 10 10 C 1.50700 * 109.47376 * 190.00093 * 9 8 7 11 11 O 1.21289 * 119.99796 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00006 * 180.02562 * 10 9 8 13 13 C 1.37100 * 119.99541 * 179.97438 * 12 10 9 14 14 H 1.07990 * 120.00412 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99551 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00056 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99785 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47298 * 60.00054 * 17 15 13 19 19 H 1.48501 * 109.47365 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47383 * 299.99747 * 17 15 13 21 21 C 1.46906 * 110.99869 * 200.32066 * 8 7 6 22 22 C 1.50701 * 109.47147 * 76.10877 * 21 8 7 23 23 C 1.33388 * 125.19878 * 85.79934 * 22 21 8 24 24 C 1.38434 * 114.91771 * 179.97438 * 23 22 21 25 25 C 1.33384 * 114.91986 * 359.97438 * 24 23 22 26 26 S 1.75883 * 125.20281 * 265.49598 * 22 21 8 27 27 H 1.08999 * 109.46785 * 185.21050 * 1 2 3 28 28 H 1.09000 * 109.47256 * 305.20454 * 1 2 3 29 29 H 1.08995 * 109.46909 * 65.20983 * 1 2 3 30 30 H 1.09000 * 109.47614 * 240.00209 * 2 1 3 31 31 H 1.09000 * 109.47263 * 119.99350 * 2 1 3 32 32 H 1.09000 * 109.47331 * 51.82591 * 4 3 2 33 33 H 1.09001 * 109.46927 * 171.81941 * 4 3 2 34 34 H 1.09005 * 109.47052 * 65.58191 * 5 4 3 35 35 H 1.08998 * 109.47581 * 185.58246 * 5 4 3 36 36 H 1.09000 * 109.47446 * 305.58905 * 5 4 3 37 37 H 1.08999 * 109.47280 * 306.04602 * 6 3 2 38 38 H 1.09003 * 109.46676 * 186.04884 * 6 3 2 39 39 H 1.09000 * 109.46719 * 56.96858 * 7 6 3 40 40 H 1.09001 * 109.46860 * 296.97798 * 7 6 3 41 41 H 1.09003 * 109.47086 * 309.99773 * 9 8 7 42 42 H 1.09006 * 109.47387 * 69.99925 * 9 8 7 43 43 H 0.96993 * 119.99938 * 359.97438 * 12 10 9 44 44 H 0.96999 * 120.00110 * 179.97438 * 16 15 13 45 45 H 1.08991 * 109.47138 * 196.10831 * 21 8 7 46 46 H 1.08997 * 109.46998 * 316.11203 * 21 8 7 47 47 H 1.07997 * 122.54819 * 359.95440 * 23 22 21 48 48 H 1.07994 * 122.53662 * 180.02562 * 24 23 22 49 49 H 1.07997 * 125.20498 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5482 2.1101 -1.1874 5 6 2.2202 1.5355 -2.4360 6 6 1.6278 2.0819 1.2325 7 6 2.3396 1.4442 2.4273 8 7 2.0043 2.1862 3.6500 9 6 0.6507 1.8536 4.1133 10 6 0.2488 2.8022 5.2131 11 8 1.0149 3.6698 5.5757 12 7 -0.9616 2.6859 5.7945 13 6 -1.3269 3.5486 6.7954 14 1 -0.6448 4.3211 7.1183 15 6 -2.5750 3.4291 7.3945 16 7 -3.4052 2.4894 7.0013 17 14 -3.0725 4.6041 8.7587 18 1 -3.0537 5.9969 8.2439 19 1 -4.4413 4.2683 9.2265 20 1 -2.1184 4.4816 9.8900 21 6 2.9971 1.9395 4.7044 22 6 4.2505 2.7216 4.4071 23 6 4.4650 3.9915 4.7545 24 6 5.6944 4.5008 4.3731 25 6 6.4784 3.6443 3.7166 26 16 5.6572 2.0973 3.5557 27 1 -0.3633 -1.0234 0.0933 28 1 -0.3634 0.5924 0.8397 29 1 -0.3633 0.4309 -0.9329 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 0.4671 2.0015 -1.2739 33 1 1.8007 3.1662 -1.0923 34 1 1.8892 0.5078 -2.5864 35 1 1.9477 2.1356 -3.3041 36 1 3.3024 1.5533 -2.3071 37 1 0.5491 2.0026 1.3674 38 1 1.9086 3.1327 1.1606 39 1 3.4173 1.4755 2.2672 40 1 2.0176 0.4081 2.5313 41 1 -0.0497 1.9426 3.2828 42 1 0.6371 0.8315 4.4920 43 1 -1.5741 1.9919 5.5048 44 1 -4.2763 2.4057 7.4197 45 1 2.5918 2.2545 5.6658 46 1 3.2324 0.8759 4.7401 47 1 3.7348 4.5781 5.2921 48 1 5.9962 5.5145 4.5914 49 1 7.4677 3.8657 3.3443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176527790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:00 Heat of formation + Delta-G solvation = 13.611403 kcal Electronic energy + Delta-G solvation = -27845.751339 eV Core-core repulsion = 24128.017753 eV Total energy + Delta-G solvation = -3717.733585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.22565 -38.28998 -37.53146 -36.11655 -33.86299 -31.78616 -31.29927 -30.95762 -30.11672 -27.85983 -26.76495 -24.95549 -24.44962 -23.66728 -22.52606 -21.14502 -19.73800 -19.15927 -18.78879 -17.86407 -17.06828 -16.42228 -16.16917 -15.90063 -15.27863 -15.10150 -14.62102 -14.49318 -14.23570 -14.00437 -13.68754 -13.62808 -13.25244 -13.12606 -12.83214 -12.47654 -12.32480 -12.27665 -12.26564 -12.18028 -11.90492 -11.65570 -11.54298 -11.49071 -11.40648 -11.14844 -11.04452 -10.91894 -10.81788 -10.47988 -10.44326 -10.43517 -10.21997 -9.47206 -8.56084 -8.37011 -8.26958 -8.19167 -7.98166 -7.89289 -6.42397 -3.83067 1.24370 1.86886 2.21809 3.04831 3.19288 3.25248 3.29392 3.69457 3.89633 4.13950 4.38261 4.82015 4.87135 4.98451 5.06792 5.08794 5.16388 5.20865 5.23716 5.26313 5.29536 5.33841 5.40148 5.47286 5.53986 5.60898 5.73449 5.79088 5.80966 5.87295 5.88228 5.91693 5.93085 5.97387 6.02750 6.11381 6.20355 6.25141 6.27780 6.45671 6.72564 6.82424 7.01992 7.03017 7.25796 7.36503 7.54349 8.05343 8.60873 9.17331 9.53690 10.05168 10.75275 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008269 B = 0.003608 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.312866 B = 7759.640337 C =10466.352634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 N -0.535 5.535 4 C 0.046 3.954 5 C -0.146 4.146 6 C 0.058 3.942 7 C 0.056 3.944 8 N -0.509 5.509 9 C 0.045 3.955 10 C 0.443 3.557 11 O -0.574 6.574 12 N -0.564 5.564 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.128 3.872 22 C -0.144 4.144 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.223 4.223 26 S 0.064 5.936 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.032 0.968 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.391 0.609 44 H 0.272 0.728 45 H 0.115 0.885 46 H 0.034 0.966 47 H 0.149 0.851 48 H 0.135 0.865 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.472 -5.182 -13.863 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.084 4.084 3 N -0.259 5.259 4 C -0.082 4.082 5 C -0.204 4.204 6 C -0.070 4.070 7 C -0.072 4.072 8 N -0.233 5.233 9 C -0.086 4.086 10 C 0.228 3.772 11 O -0.458 6.458 12 N -0.201 5.201 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.756 3.244 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.002 4.002 22 C -0.261 4.261 23 C -0.148 4.148 24 C -0.160 4.160 25 C -0.358 4.358 26 S 0.326 5.674 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.224 0.776 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.052 0.948 47 H 0.167 0.833 48 H 0.153 0.847 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.701 -5.532 -14.321 20.577 hybrid contribution -2.057 0.675 1.239 2.495 sum 11.644 -4.857 -13.082 18.174 Atomic orbital electron populations 1.22428 0.98288 1.02425 1.02226 1.22220 0.92921 0.90617 1.02609 1.62213 1.59431 1.02195 1.02069 1.22101 0.97593 0.98286 0.90199 1.21765 1.01653 1.00595 0.96372 1.22087 0.97821 0.98865 0.88246 1.22179 1.01300 0.94385 0.89385 1.61360 1.00692 1.57353 1.03887 1.21914 0.90726 0.97293 0.98648 1.19716 0.83719 0.87921 0.85843 1.90494 1.52114 1.37224 1.65986 1.41866 1.14008 1.30968 1.33220 1.19639 1.00142 1.11460 1.11543 0.87935 1.25246 0.95805 0.97680 0.99147 1.69600 1.08977 1.32794 1.42996 0.85939 0.77477 0.80228 0.80706 1.19900 1.21019 1.19916 1.20635 0.87539 0.94927 0.97073 1.24325 0.98260 0.98656 1.04906 1.20297 0.97323 0.94840 1.02318 1.20238 0.94424 1.00774 1.00575 1.25455 1.04360 0.96951 1.09031 1.84075 1.10234 1.15029 1.58083 0.92142 0.92034 0.92492 0.90777 0.90683 0.94362 0.90906 0.92987 0.92565 0.91833 0.94221 0.89920 0.89821 0.94957 0.89390 0.93474 0.77575 0.91848 0.86749 0.94798 0.83299 0.84713 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.89 9.22 37.16 0.34 -1.55 16 2 C 0.04 0.44 5.66 -3.82 -0.02 0.42 16 3 N -0.54 -5.99 4.70 -234.62 -1.10 -7.09 16 4 C 0.05 0.46 5.47 -3.83 -0.02 0.44 16 5 C -0.15 -1.22 9.75 37.16 0.36 -0.86 16 6 C 0.06 0.75 4.86 -3.82 -0.02 0.73 16 7 C 0.06 0.77 4.66 -3.83 -0.02 0.75 16 8 N -0.51 -8.34 4.09 -237.52 -0.97 -9.31 16 9 C 0.05 0.79 5.27 -4.98 -0.03 0.76 16 10 C 0.44 10.04 7.29 -10.98 -0.08 9.96 16 11 O -0.57 -14.61 14.12 5.55 0.08 -14.53 16 12 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 13 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 14 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 17 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.13 2.10 4.96 -4.97 -0.02 2.07 16 22 C -0.14 -2.25 5.51 -36.00 -0.20 -2.45 16 23 C -0.12 -1.88 10.05 -41.20 -0.41 -2.29 16 24 C -0.13 -1.73 10.18 -41.21 -0.42 -2.15 16 25 C -0.22 -2.73 11.23 29.04 0.33 -2.40 16 26 S 0.06 0.83 22.07 -107.50 -2.37 -1.55 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.68 6.14 -51.93 -0.32 0.36 16 29 H 0.06 0.53 6.52 -51.93 -0.34 0.20 16 30 H 0.07 0.66 6.67 -51.93 -0.35 0.32 16 31 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 32 H 0.04 0.38 6.01 -51.93 -0.31 0.07 16 33 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 34 H 0.05 0.41 6.88 -51.93 -0.36 0.06 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.53 4.81 -51.93 -0.25 0.28 16 38 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 39 H 0.08 1.17 6.16 -51.93 -0.32 0.85 16 40 H 0.03 0.42 6.46 -51.93 -0.34 0.08 16 41 H 0.09 1.42 6.72 -51.93 -0.35 1.07 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.11 2.21 5.85 -51.93 -0.30 1.91 16 46 H 0.03 0.50 7.99 -51.93 -0.42 0.09 16 47 H 0.15 2.65 8.06 -52.49 -0.42 2.23 16 48 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 49 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -29.08 395.93 -10.80 -39.88 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.59 Total: 12.66 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.45 Total: -4.35 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -1.41 Total: -53.93 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.37 Total: -1.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.08 -10.80 -39.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176527790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.489 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds