Wall clock time and date at job start Tue Mar 31 2020 22:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46909 * 109.47063 * 2 1 4 4 C 1.46895 * 110.99853 * 300.02338 * 3 2 1 5 5 C 1.52996 * 109.47185 * 291.82032 * 4 3 2 6 6 C 1.46905 * 110.99609 * 63.97563 * 3 2 1 7 7 C 1.53003 * 109.47431 * 66.04817 * 6 3 2 8 8 N 1.46893 * 109.47136 * 176.97547 * 7 6 3 9 9 C 1.46891 * 111.00331 * 76.36541 * 8 7 6 10 10 C 1.50700 * 109.47376 * 190.00093 * 9 8 7 11 11 O 1.21289 * 119.99796 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00006 * 180.02562 * 10 9 8 13 13 C 1.37100 * 119.99541 * 179.97438 * 12 10 9 14 14 H 1.07990 * 120.00412 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99551 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00056 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99785 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47298 * 60.00054 * 17 15 13 19 19 H 1.48501 * 109.47365 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47383 * 299.99747 * 17 15 13 21 21 C 1.46906 * 110.99869 * 200.32066 * 8 7 6 22 22 C 1.50701 * 109.47147 * 76.10877 * 21 8 7 23 23 C 1.33388 * 125.19878 * 85.79934 * 22 21 8 24 24 C 1.38434 * 114.91771 * 179.97438 * 23 22 21 25 25 C 1.33384 * 114.91986 * 359.97438 * 24 23 22 26 26 S 1.75883 * 125.20281 * 265.49598 * 22 21 8 27 27 H 1.08999 * 109.46785 * 185.21050 * 1 2 3 28 28 H 1.09000 * 109.47256 * 305.20454 * 1 2 3 29 29 H 1.08995 * 109.46909 * 65.20983 * 1 2 3 30 30 H 1.09000 * 109.47614 * 240.00209 * 2 1 3 31 31 H 1.09000 * 109.47263 * 119.99350 * 2 1 3 32 32 H 1.09000 * 109.47331 * 51.82591 * 4 3 2 33 33 H 1.09001 * 109.46927 * 171.81941 * 4 3 2 34 34 H 1.09005 * 109.47052 * 65.58191 * 5 4 3 35 35 H 1.08998 * 109.47581 * 185.58246 * 5 4 3 36 36 H 1.09000 * 109.47446 * 305.58905 * 5 4 3 37 37 H 1.08999 * 109.47280 * 306.04602 * 6 3 2 38 38 H 1.09003 * 109.46676 * 186.04884 * 6 3 2 39 39 H 1.09000 * 109.46719 * 56.96858 * 7 6 3 40 40 H 1.09001 * 109.46860 * 296.97798 * 7 6 3 41 41 H 1.09003 * 109.47086 * 309.99773 * 9 8 7 42 42 H 1.09006 * 109.47387 * 69.99925 * 9 8 7 43 43 H 0.96993 * 119.99938 * 359.97438 * 12 10 9 44 44 H 0.96999 * 120.00110 * 179.97438 * 16 15 13 45 45 H 1.08991 * 109.47138 * 196.10831 * 21 8 7 46 46 H 1.08997 * 109.46998 * 316.11203 * 21 8 7 47 47 H 1.07997 * 122.54819 * 359.95440 * 23 22 21 48 48 H 1.07994 * 122.53662 * 180.02562 * 24 23 22 49 49 H 1.07997 * 125.20498 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5482 2.1101 -1.1874 5 6 2.2202 1.5355 -2.4360 6 6 1.6278 2.0819 1.2325 7 6 2.3396 1.4442 2.4273 8 7 2.0043 2.1862 3.6500 9 6 0.6507 1.8536 4.1133 10 6 0.2488 2.8022 5.2131 11 8 1.0149 3.6698 5.5757 12 7 -0.9616 2.6859 5.7945 13 6 -1.3269 3.5486 6.7954 14 1 -0.6448 4.3211 7.1183 15 6 -2.5750 3.4291 7.3945 16 7 -3.4052 2.4894 7.0013 17 14 -3.0725 4.6041 8.7587 18 1 -3.0537 5.9969 8.2439 19 1 -4.4413 4.2683 9.2265 20 1 -2.1184 4.4816 9.8900 21 6 2.9971 1.9395 4.7044 22 6 4.2505 2.7216 4.4071 23 6 4.4650 3.9915 4.7545 24 6 5.6944 4.5008 4.3731 25 6 6.4784 3.6443 3.7166 26 16 5.6572 2.0973 3.5557 27 1 -0.3633 -1.0234 0.0933 28 1 -0.3634 0.5924 0.8397 29 1 -0.3633 0.4309 -0.9329 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 0.4671 2.0015 -1.2739 33 1 1.8007 3.1662 -1.0923 34 1 1.8892 0.5078 -2.5864 35 1 1.9477 2.1356 -3.3041 36 1 3.3024 1.5533 -2.3071 37 1 0.5491 2.0026 1.3674 38 1 1.9086 3.1327 1.1606 39 1 3.4173 1.4755 2.2672 40 1 2.0176 0.4081 2.5313 41 1 -0.0497 1.9426 3.2828 42 1 0.6371 0.8315 4.4920 43 1 -1.5741 1.9919 5.5048 44 1 -4.2763 2.4057 7.4197 45 1 2.5918 2.2545 5.6658 46 1 3.2324 0.8759 4.7401 47 1 3.7348 4.5781 5.2921 48 1 5.9962 5.5145 4.5914 49 1 7.4677 3.8657 3.3443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176527790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:59 Heat of formation + Delta-G solvation = -5.130585 kcal Electronic energy + Delta-G solvation = -27846.564052 eV Core-core repulsion = 24128.017753 eV Total energy + Delta-G solvation = -3718.546299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.63435 -39.52106 -38.76950 -37.42770 -35.83506 -33.27529 -32.66370 -31.91713 -31.29517 -29.12176 -27.91609 -26.65898 -25.47101 -24.82499 -23.59667 -22.33223 -20.99901 -20.54118 -19.98012 -19.79277 -18.18687 -17.90635 -17.15844 -17.04143 -16.62212 -16.41112 -16.22440 -15.83016 -15.50574 -15.49367 -15.04275 -14.88994 -14.36802 -14.06418 -13.89445 -13.72633 -13.62443 -13.45504 -13.39796 -13.30750 -13.18993 -12.97257 -12.83982 -12.76549 -12.46813 -12.41961 -12.27048 -12.16043 -12.13432 -11.97405 -11.77688 -11.62112 -11.41702 -11.33621 -10.26370 -9.97865 -9.53262 -9.34270 -9.22952 -9.14165 -8.45059 -5.92922 0.13920 0.78288 1.13087 1.39435 1.41270 1.51696 1.90241 2.07556 2.28473 2.63354 3.14251 3.21973 3.44251 3.86298 3.95252 4.01693 4.07712 4.19351 4.27200 4.31140 4.33000 4.40056 4.42982 4.47583 4.49995 4.56798 4.64828 4.68371 4.69614 4.76814 4.81327 4.83922 4.92039 5.03242 5.07260 5.15260 5.16553 5.29451 5.32843 5.42329 5.46772 5.54814 5.67957 5.86177 6.02171 6.08045 6.18563 6.23634 6.62554 7.14970 7.58644 8.14408 8.72254 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008269 B = 0.003608 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.312866 B = 7759.640337 C =10466.352634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 N -0.538 5.538 4 C 0.043 3.957 5 C -0.139 4.139 6 C 0.066 3.934 7 C 0.064 3.936 8 N -0.523 5.523 9 C 0.059 3.941 10 C 0.443 3.557 11 O -0.605 6.605 12 N -0.575 5.575 13 C -0.329 4.329 14 H 0.080 0.920 15 C -0.013 4.013 16 N -0.922 5.922 17 Si 0.989 3.011 18 H -0.273 1.273 19 H -0.272 1.272 20 H -0.272 1.272 21 C 0.132 3.868 22 C -0.169 4.169 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.209 4.209 26 S 0.103 5.897 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.394 0.606 44 H 0.276 0.724 45 H 0.077 0.923 46 H 0.051 0.949 47 H 0.116 0.884 48 H 0.153 0.847 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.613 -6.258 -15.432 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.083 4.083 3 N -0.262 5.262 4 C -0.084 4.084 5 C -0.197 4.197 6 C -0.062 4.062 7 C -0.064 4.064 8 N -0.248 5.248 9 C -0.072 4.072 10 C 0.230 3.770 11 O -0.490 6.490 12 N -0.213 5.213 13 C -0.458 4.458 14 H 0.098 0.902 15 C -0.212 4.212 16 N -0.563 5.563 17 Si 0.813 3.187 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.197 1.197 21 C 0.003 3.997 22 C -0.287 4.287 23 C -0.165 4.165 24 C -0.174 4.174 25 C -0.344 4.344 26 S 0.365 5.635 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.228 0.772 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.134 0.866 48 H 0.171 0.829 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 14.846 -6.628 -15.913 22.750 hybrid contribution -2.317 0.999 1.660 3.020 sum 12.529 -5.629 -14.254 19.795 Atomic orbital electron populations 1.22385 0.98140 1.02775 1.01660 1.22276 0.92995 0.89749 1.03287 1.62233 1.59614 1.02806 1.01559 1.22163 0.97819 0.97988 0.90446 1.21712 1.01103 1.01090 0.95788 1.21916 0.97300 0.97996 0.89030 1.22146 1.01359 0.94756 0.88119 1.61322 1.00075 1.58598 1.04776 1.21752 0.91805 0.96496 0.97102 1.20653 0.82543 0.87863 0.85972 1.90484 1.52793 1.38744 1.66989 1.41917 1.14865 1.31060 1.33426 1.19602 1.00659 1.12238 1.13342 0.90247 1.25983 0.95294 0.99050 1.00890 1.69664 1.09239 1.33613 1.43770 0.85040 0.77541 0.78145 0.77934 1.19825 1.19615 1.19728 1.20450 0.87930 0.95841 0.95456 1.24321 0.99311 0.98802 1.06228 1.20268 0.98131 0.95164 1.02958 1.20325 0.93597 1.02096 1.01422 1.25893 1.05251 0.96029 1.07232 1.83868 1.08050 1.14889 1.56657 0.91109 0.93628 0.92217 0.89329 0.90759 0.94339 0.91660 0.92306 0.91370 0.92281 0.94778 0.91801 0.89777 0.93519 0.87808 0.91430 0.77212 0.91414 0.90498 0.93129 0.86583 0.82895 0.79122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 9.22 71.98 0.66 -2.70 16 2 C 0.04 0.79 5.66 86.30 0.49 1.27 16 3 N -0.54 -11.23 4.70 -896.20 -4.21 -15.44 16 4 C 0.04 0.81 5.47 86.30 0.47 1.28 16 5 C -0.14 -2.03 9.75 71.98 0.70 -1.33 16 6 C 0.07 1.67 4.86 86.30 0.42 2.08 16 7 C 0.06 1.68 4.66 86.31 0.40 2.08 16 8 N -0.52 -17.25 4.09 -905.39 -3.70 -20.95 16 9 C 0.06 2.08 5.27 85.56 0.45 2.53 16 10 C 0.44 20.81 7.29 87.66 0.64 21.45 16 11 O -0.60 -32.48 14.12 -3.06 -0.04 -32.52 16 12 N -0.57 -29.32 5.29 -306.99 -1.62 -30.94 16 13 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 14 H 0.08 4.77 7.16 -2.92 -0.02 4.75 16 15 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 16 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 17 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.13 4.45 4.96 85.56 0.42 4.87 16 22 C -0.17 -5.33 5.51 24.59 0.14 -5.19 16 23 C -0.13 -4.44 10.05 21.22 0.21 -4.23 16 24 C -0.14 -3.75 10.18 21.22 0.22 -3.53 16 25 C -0.21 -4.59 11.23 66.72 0.75 -3.84 16 26 S 0.10 2.47 22.07 -56.49 -1.25 1.23 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.04 0.95 6.14 -2.39 -0.01 0.94 16 29 H 0.06 1.01 6.52 -2.39 -0.02 0.99 16 30 H 0.09 1.33 6.67 -2.39 -0.02 1.32 16 31 H 0.07 1.33 6.36 -2.39 -0.02 1.31 16 32 H 0.04 0.72 6.01 -2.39 -0.01 0.70 16 33 H 0.06 1.30 7.89 -2.39 -0.02 1.28 16 34 H 0.06 0.78 6.88 -2.38 -0.02 0.76 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.03 0.90 4.81 -2.39 -0.01 0.89 16 38 H 0.06 1.85 7.90 -2.39 -0.02 1.83 16 39 H 0.08 2.22 6.16 -2.39 -0.01 2.21 16 40 H 0.05 1.11 6.46 -2.39 -0.02 1.09 16 41 H 0.10 3.31 6.72 -2.39 -0.02 3.30 16 42 H 0.07 2.10 8.12 -2.38 -0.02 2.09 16 43 H 0.39 19.23 7.90 -92.71 -0.73 18.50 16 44 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.08 3.15 5.85 -2.39 -0.01 3.14 16 46 H 0.05 1.48 7.99 -2.39 -0.02 1.46 16 47 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 48 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 49 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -64.51 395.93 -1.02 -65.54 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: 0.23 Total: 40.68 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 7.26 Total: -3.22 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -9.25 Total: -116.86 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.04 Total: -32.52 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.25 Total: 1.23 kcal Total: -64.51 -1.02 -65.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176527790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.408 kcal (2) G-P(sol) polarization free energy of solvation -64.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds