Wall clock time and date at job start Tue Mar 31 2020 23:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42889 * 114.00005 * 2 1 4 4 C 1.53009 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.46894 * 304.99956 * 4 3 2 6 6 O 1.42897 * 109.47207 * 64.99960 * 4 3 2 7 7 C 1.53008 * 109.46989 * 185.00046 * 4 3 2 8 8 N 1.46897 * 109.46968 * 179.97438 * 7 4 3 9 9 C 1.46897 * 110.99772 * 179.97438 * 8 7 4 10 10 C 1.50706 * 109.46900 * 179.97438 * 9 8 7 11 11 C 1.38247 * 119.92660 * 269.72851 * 10 9 8 12 12 C 1.38247 * 120.14278 * 179.72385 * 11 10 9 13 13 C 1.38561 * 119.99823 * 0.55074 * 12 11 10 14 14 O 1.36000 * 120.07301 * 179.70490 * 13 12 11 15 15 C 1.42903 * 116.99972 * 0.02562 * 14 13 12 16 16 C 1.39157 * 119.85717 * 359.72327 * 13 12 11 17 17 O 1.35987 * 120.07529 * 180.02562 * 16 13 12 18 18 C 1.42899 * 117.00379 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47716 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47161 * 179.97438 * 19 18 17 21 21 H 1.07993 * 120.00066 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99791 * 180.02562 * 20 19 18 23 23 N 1.31521 * 120.00017 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46752 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47280 * 119.99528 * 24 22 20 27 27 H 1.48505 * 109.46968 * 240.00005 * 24 22 20 28 28 C 1.38243 * 119.92333 * 90.00571 * 10 9 8 29 29 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46643 * 300.00058 * 1 2 3 31 31 H 1.09003 * 109.47000 * 59.99903 * 1 2 3 32 32 H 1.08996 * 109.47839 * 59.99982 * 3 2 1 33 33 H 1.09005 * 109.47549 * 300.00193 * 3 2 1 34 34 H 0.96705 * 113.99595 * 59.99872 * 6 4 3 35 35 H 1.08993 * 109.46954 * 59.99732 * 7 4 3 36 36 H 1.09004 * 109.46833 * 299.99893 * 7 4 3 37 37 H 1.00899 * 110.99868 * 56.04737 * 8 7 4 38 38 H 1.09000 * 109.46743 * 60.00757 * 9 8 7 39 39 H 1.09000 * 109.47313 * 299.99940 * 9 8 7 40 40 H 1.07993 * 119.92811 * 359.97438 * 11 10 9 41 41 H 1.07999 * 120.00072 * 180.25585 * 12 11 10 42 42 H 1.09002 * 109.46538 * 60.00087 * 15 14 13 43 43 H 1.08995 * 109.47006 * 180.02562 * 15 14 13 44 44 H 1.09001 * 109.46923 * 300.00357 * 15 14 13 45 45 H 1.09004 * 109.46536 * 300.00191 * 18 17 16 46 46 H 1.09003 * 109.47004 * 59.99552 * 18 17 16 47 47 H 1.08997 * 109.46845 * 300.00238 * 19 18 17 48 48 H 1.08997 * 109.46702 * 59.99699 * 19 18 17 49 49 H 0.97002 * 119.99980 * 180.02562 * 23 22 20 50 50 H 1.07997 * 120.00101 * 359.97113 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 1 3.8515 0.5681 0.8409 6 8 3.9650 0.5795 -1.2219 7 6 4.1576 2.5768 0.1251 8 7 5.6219 2.4607 0.1251 9 6 6.2546 3.7811 0.2440 10 6 7.7533 3.6220 0.2412 11 6 8.4310 3.4515 1.4340 12 6 9.8051 3.2994 1.4361 13 6 10.5073 3.3292 0.2419 14 8 11.8597 3.1858 0.2428 15 6 12.4924 3.0075 1.5116 16 6 9.8256 3.5065 -0.9583 17 8 10.5102 3.5359 -2.1329 18 6 9.7450 3.7209 -3.3254 19 6 10.6804 3.7261 -4.5362 20 6 9.8732 3.9206 -5.7938 21 1 8.8003 4.0291 -5.7354 22 6 10.5043 3.9588 -7.0190 23 7 11.8109 3.8261 -7.0901 24 14 9.5039 4.2006 -8.5779 25 1 8.0657 4.3238 -8.2289 26 1 9.9538 5.4360 -9.2682 27 1 9.6967 3.0336 -9.4758 28 6 8.4478 3.6527 -0.9538 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.7176 1.0752 -2.0146 35 1 3.8300 3.0382 1.0566 36 1 3.8415 3.1932 -0.7165 37 1 5.9463 1.9775 -0.6992 38 1 5.9414 4.2514 1.1761 39 1 5.9536 4.4054 -0.5972 40 1 7.8855 3.4330 2.3658 41 1 10.3318 3.1622 2.3689 42 1 12.1022 2.1085 1.9890 43 1 13.5683 2.9063 1.3701 44 1 12.2890 3.8719 2.1437 45 1 9.0261 2.9076 -3.4256 46 1 9.2135 4.6711 -3.2723 47 1 11.3995 4.5390 -4.4361 48 1 11.2115 2.7757 -4.5890 49 1 12.2550 3.8534 -7.9520 50 1 7.9163 3.7900 -1.8838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265401233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:14 Heat of formation + Delta-G solvation = -152.636463 kcal Electronic energy + Delta-G solvation = -28849.115468 eV Core-core repulsion = 24649.127212 eV Total energy + Delta-G solvation = -4199.988256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31866 -39.08543 -38.13961 -37.59472 -36.87197 -35.02426 -33.34415 -31.57082 -30.62258 -30.04001 -29.26886 -27.69346 -26.94973 -25.49907 -24.98398 -23.58469 -22.39421 -21.98403 -21.16077 -20.45080 -18.26553 -17.48854 -16.98148 -16.91721 -16.45275 -16.40607 -16.09081 -15.81148 -15.62334 -15.40172 -14.96342 -14.69705 -14.58107 -14.54061 -14.36780 -14.17803 -13.88730 -13.32881 -12.85624 -12.81125 -12.60266 -12.40487 -12.30844 -12.09572 -11.99411 -11.78824 -11.48893 -11.45456 -11.13199 -11.03476 -10.93768 -10.83176 -10.75521 -10.54782 -10.33032 -10.12177 -9.81019 -9.63116 -9.25525 -8.73530 -8.47198 -8.42385 -7.46758 -6.07714 -4.12255 1.41121 1.62490 3.13246 3.27561 3.34337 3.37647 3.44755 3.78384 3.83927 4.08845 4.21860 4.42291 4.60996 4.65684 4.68577 4.77686 4.83772 4.88244 4.92982 4.99112 5.01196 5.05298 5.19698 5.21237 5.24776 5.27430 5.28566 5.28698 5.40403 5.51543 5.58124 5.62393 5.73629 5.85465 6.06225 6.07145 6.30754 6.36964 6.62028 6.66566 6.73709 6.75763 6.87526 7.16688 7.35754 7.38332 7.59210 7.69376 7.86585 8.13777 8.27153 8.93575 9.51713 11.03893 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.006340 B = 0.002788 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4415.377005 B =10041.072987 C =13966.589706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.030 3.970 4 C 0.111 3.889 5 H 0.115 0.885 6 O -0.548 6.548 7 C 0.030 3.970 8 N -0.679 5.679 9 C 0.105 3.895 10 C -0.085 4.085 11 C -0.107 4.107 12 C -0.176 4.176 13 C 0.091 3.909 14 O -0.303 6.303 15 C 0.028 3.972 16 C 0.120 3.880 17 O -0.304 6.304 18 C 0.065 3.935 19 C 0.025 3.975 20 C -0.524 4.524 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.888 5.888 24 Si 0.898 3.102 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.282 1.282 28 C -0.171 4.171 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.372 0.628 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.354 0.646 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.051 0.949 43 H 0.097 0.903 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.262 0.738 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.052 -1.615 20.762 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.048 4.048 4 C 0.051 3.949 5 H 0.133 0.867 6 O -0.352 6.352 7 C -0.100 4.100 8 N -0.312 5.312 9 C -0.023 4.023 10 C -0.085 4.085 11 C -0.126 4.126 12 C -0.195 4.195 13 C 0.046 3.954 14 O -0.216 6.216 15 C -0.067 4.067 16 C 0.072 3.928 17 O -0.217 6.217 18 C -0.009 4.009 19 C -0.012 4.012 20 C -0.563 4.563 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.191 4.191 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.218 0.782 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.174 0.826 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.072 0.928 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.176 -2.382 21.497 27.009 hybrid contribution -1.383 1.243 -1.879 2.644 sum -17.559 -1.139 19.618 26.353 Atomic orbital electron populations 1.22779 0.81058 1.02963 0.99872 1.87970 1.19548 1.27008 1.95339 1.23269 0.95109 0.85532 1.00868 1.21966 0.89701 0.94093 0.89149 0.86740 1.86702 1.80692 1.52636 1.15165 1.22541 0.89545 0.96264 1.01683 1.60409 1.04053 1.19001 1.47717 1.20796 0.90288 0.89965 1.01258 1.19296 0.94406 1.02226 0.92611 1.20530 0.92985 1.01650 0.97453 1.20956 0.95234 1.07264 0.96021 1.18353 0.83048 1.02236 0.91799 1.86245 1.16779 1.87562 1.31030 1.23016 0.98384 1.00438 0.84899 1.18395 0.89966 0.98683 0.85716 1.86283 1.36648 1.86257 1.12543 1.23316 0.96074 0.98946 0.82554 1.19115 0.94744 0.98940 0.88377 1.20996 0.93603 1.50935 0.90732 0.92403 1.24995 0.94966 0.95044 0.99236 1.69994 1.08041 1.49456 1.25179 0.86444 0.80185 0.77829 0.82986 1.19696 1.20875 1.20833 1.21016 0.92299 1.06720 0.99029 0.89445 0.94120 0.94085 0.92351 0.93012 0.78166 0.89938 0.94746 0.82643 0.90294 0.94330 0.86026 0.85223 0.92993 0.88430 0.93065 0.93270 0.93372 0.95377 0.95328 0.92782 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.65 10.67 -40.09 -0.43 -4.08 16 3 C 0.03 0.22 5.57 37.16 0.21 0.42 16 4 C 0.11 0.94 3.52 -26.72 -0.09 0.84 16 5 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 6 O -0.55 -5.66 12.64 -40.09 -0.51 -6.17 16 7 C 0.03 0.23 5.39 -3.82 -0.02 0.21 16 8 N -0.68 -6.91 6.49 -115.06 -0.75 -7.66 16 9 C 0.11 1.08 5.81 -4.97 -0.03 1.06 16 10 C -0.08 -1.10 5.39 -104.61 -0.56 -1.67 16 11 C -0.11 -1.32 9.69 -39.57 -0.38 -1.71 16 12 C -0.18 -2.31 9.04 -39.46 -0.36 -2.67 16 13 C 0.09 1.52 6.70 -39.12 -0.26 1.25 16 14 O -0.30 -5.06 10.28 -34.24 -0.35 -5.41 16 15 C 0.03 0.30 9.81 101.05 0.99 1.29 16 16 C 0.12 2.21 6.70 -39.12 -0.26 1.95 16 17 O -0.30 -6.67 9.92 -34.20 -0.34 -7.00 16 18 C 0.07 1.44 4.68 37.16 0.17 1.61 16 19 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 20 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 21 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 24 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C -0.17 -2.68 8.69 -39.46 -0.34 -3.03 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.37 2.63 9.05 45.56 0.41 3.04 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.35 4.05 8.11 -39.29 -0.32 3.73 16 38 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 42 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 45 H 0.05 1.02 7.66 -51.93 -0.40 0.63 16 46 H 0.05 1.00 7.66 -51.93 -0.40 0.60 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.13 2.03 6.30 -52.49 -0.33 1.70 16 LS Contribution 416.31 15.07 6.27 6.27 Total: -1.00 -34.41 416.31 -8.39 -42.79 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.61 Total: 2.98 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.39 Total: -12.06 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: -0.01 Total: -33.68 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.63 Total: -22.67 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.41 -8.39 -42.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265401233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.842 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds