Wall clock time and date at job start Tue Mar 31 2020 23:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42889 * 114.00005 * 2 1 4 4 C 1.53009 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.46894 * 304.99956 * 4 3 2 6 6 O 1.42897 * 109.47207 * 64.99960 * 4 3 2 7 7 C 1.53008 * 109.46989 * 185.00046 * 4 3 2 8 8 N 1.46897 * 109.46968 * 179.97438 * 7 4 3 9 9 C 1.46897 * 110.99772 * 179.97438 * 8 7 4 10 10 C 1.50706 * 109.46900 * 179.97438 * 9 8 7 11 11 C 1.38247 * 119.92660 * 269.72851 * 10 9 8 12 12 C 1.38247 * 120.14278 * 179.72385 * 11 10 9 13 13 C 1.38561 * 119.99823 * 0.55074 * 12 11 10 14 14 O 1.36000 * 120.07301 * 179.70490 * 13 12 11 15 15 C 1.42903 * 116.99972 * 0.02562 * 14 13 12 16 16 C 1.39157 * 119.85717 * 359.72327 * 13 12 11 17 17 O 1.35987 * 120.07529 * 180.02562 * 16 13 12 18 18 C 1.42899 * 117.00379 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47716 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47161 * 179.97438 * 19 18 17 21 21 H 1.07993 * 120.00066 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99791 * 180.02562 * 20 19 18 23 23 N 1.31521 * 120.00017 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46752 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47280 * 119.99528 * 24 22 20 27 27 H 1.48505 * 109.46968 * 240.00005 * 24 22 20 28 28 C 1.38243 * 119.92333 * 90.00571 * 10 9 8 29 29 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46643 * 300.00058 * 1 2 3 31 31 H 1.09003 * 109.47000 * 59.99903 * 1 2 3 32 32 H 1.08996 * 109.47839 * 59.99982 * 3 2 1 33 33 H 1.09005 * 109.47549 * 300.00193 * 3 2 1 34 34 H 0.96705 * 113.99595 * 59.99872 * 6 4 3 35 35 H 1.08993 * 109.46954 * 59.99732 * 7 4 3 36 36 H 1.09004 * 109.46833 * 299.99893 * 7 4 3 37 37 H 1.00899 * 110.99868 * 56.04737 * 8 7 4 38 38 H 1.09000 * 109.46743 * 60.00757 * 9 8 7 39 39 H 1.09000 * 109.47313 * 299.99940 * 9 8 7 40 40 H 1.07993 * 119.92811 * 359.97438 * 11 10 9 41 41 H 1.07999 * 120.00072 * 180.25585 * 12 11 10 42 42 H 1.09002 * 109.46538 * 60.00087 * 15 14 13 43 43 H 1.08995 * 109.47006 * 180.02562 * 15 14 13 44 44 H 1.09001 * 109.46923 * 300.00357 * 15 14 13 45 45 H 1.09004 * 109.46536 * 300.00191 * 18 17 16 46 46 H 1.09003 * 109.47004 * 59.99552 * 18 17 16 47 47 H 1.08997 * 109.46845 * 300.00238 * 19 18 17 48 48 H 1.08997 * 109.46702 * 59.99699 * 19 18 17 49 49 H 0.97002 * 119.99980 * 180.02562 * 23 22 20 50 50 H 1.07997 * 120.00101 * 359.97113 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 1 3.8515 0.5681 0.8409 6 8 3.9650 0.5795 -1.2219 7 6 4.1576 2.5768 0.1251 8 7 5.6219 2.4607 0.1251 9 6 6.2546 3.7811 0.2440 10 6 7.7533 3.6220 0.2412 11 6 8.4310 3.4515 1.4340 12 6 9.8051 3.2994 1.4361 13 6 10.5073 3.3292 0.2419 14 8 11.8597 3.1858 0.2428 15 6 12.4924 3.0075 1.5116 16 6 9.8256 3.5065 -0.9583 17 8 10.5102 3.5359 -2.1329 18 6 9.7450 3.7209 -3.3254 19 6 10.6804 3.7261 -4.5362 20 6 9.8732 3.9206 -5.7938 21 1 8.8003 4.0291 -5.7354 22 6 10.5043 3.9588 -7.0190 23 7 11.8109 3.8261 -7.0901 24 14 9.5039 4.2006 -8.5779 25 1 8.0657 4.3238 -8.2289 26 1 9.9538 5.4360 -9.2682 27 1 9.6967 3.0336 -9.4758 28 6 8.4478 3.6527 -0.9538 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.7176 1.0752 -2.0146 35 1 3.8300 3.0382 1.0566 36 1 3.8415 3.1932 -0.7165 37 1 5.9463 1.9775 -0.6992 38 1 5.9414 4.2514 1.1761 39 1 5.9536 4.4054 -0.5972 40 1 7.8855 3.4330 2.3658 41 1 10.3318 3.1622 2.3689 42 1 12.1022 2.1085 1.9890 43 1 13.5683 2.9063 1.3701 44 1 12.2890 3.8719 2.1437 45 1 9.0261 2.9076 -3.4256 46 1 9.2135 4.6711 -3.2723 47 1 11.3995 4.5390 -4.4361 48 1 11.2115 2.7757 -4.5890 49 1 12.2550 3.8534 -7.9520 50 1 7.9163 3.7900 -1.8838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265401233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:13 Heat of formation + Delta-G solvation = -179.168685 kcal Electronic energy + Delta-G solvation = -28850.265991 eV Core-core repulsion = 24649.127212 eV Total energy + Delta-G solvation = -4201.138779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.51466 -39.72656 -39.46230 -38.55130 -37.70745 -35.90147 -35.42677 -32.64980 -32.17732 -31.00606 -30.55032 -28.51711 -27.61764 -27.04608 -26.11236 -24.36832 -23.90561 -22.66955 -22.45639 -21.86305 -19.52905 -18.63702 -18.17130 -17.68302 -17.62898 -17.44703 -17.14321 -16.99920 -16.56680 -16.49567 -16.33264 -16.02330 -15.65443 -15.47365 -15.14079 -15.08410 -14.94895 -14.34398 -14.19639 -14.14598 -13.94424 -13.46800 -13.23457 -13.07310 -12.96611 -12.82572 -12.66425 -12.61741 -12.52642 -12.47163 -12.14902 -11.98303 -11.87533 -11.74414 -11.59277 -11.57947 -11.38640 -10.99789 -10.65927 -10.63272 -9.69553 -9.37181 -8.70568 -8.26566 -6.40724 0.30643 0.47364 1.40246 1.42008 1.55202 2.27389 2.43462 2.51117 2.53368 2.78675 3.07603 3.44445 3.54829 3.80783 3.85139 4.03283 4.08944 4.09223 4.11337 4.17582 4.26005 4.28836 4.39953 4.41404 4.43090 4.43709 4.46725 4.53757 4.55868 4.62652 4.63454 4.71819 4.73741 4.74826 4.85190 4.88372 5.10599 5.20915 5.30050 5.32495 5.45963 5.61443 5.68251 5.81024 6.00151 6.05299 6.20951 6.25504 6.34342 6.72237 6.75289 6.82214 7.29390 8.87044 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.006340 B = 0.002788 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4415.377005 B =10041.072987 C =13966.589706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.031 3.969 4 C 0.112 3.888 5 H 0.096 0.904 6 O -0.573 6.573 7 C 0.036 3.964 8 N -0.689 5.689 9 C 0.110 3.890 10 C -0.083 4.083 11 C -0.095 4.095 12 C -0.167 4.167 13 C 0.073 3.927 14 O -0.342 6.342 15 C 0.019 3.981 16 C 0.069 3.931 17 O -0.337 6.337 18 C 0.086 3.914 19 C 0.029 3.971 20 C -0.543 4.543 21 H 0.072 0.928 22 C -0.001 4.001 23 N -0.932 5.932 24 Si 0.978 3.022 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.277 1.277 28 C -0.173 4.173 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.383 0.617 35 H 0.101 0.899 36 H 0.046 0.954 37 H 0.343 0.657 38 H 0.102 0.898 39 H 0.041 0.959 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.059 0.941 47 H -0.004 1.004 48 H -0.005 1.005 49 H 0.267 0.733 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.062 -0.889 22.531 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.046 4.046 4 C 0.053 3.947 5 H 0.114 0.886 6 O -0.380 6.380 7 C -0.094 4.094 8 N -0.321 5.321 9 C -0.018 4.018 10 C -0.084 4.084 11 C -0.114 4.114 12 C -0.186 4.186 13 C 0.028 3.972 14 O -0.257 6.257 15 C -0.076 4.076 16 C 0.024 3.976 17 O -0.252 6.252 18 C 0.012 3.988 19 C -0.008 4.008 20 C -0.580 4.580 21 H 0.090 0.910 22 C -0.199 4.199 23 N -0.571 5.571 24 Si 0.802 3.198 25 H -0.179 1.179 26 H -0.202 1.202 27 H -0.203 1.203 28 C -0.192 4.192 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.162 0.838 38 H 0.120 0.880 39 H 0.059 0.941 40 H 0.175 0.825 41 H 0.180 0.820 42 H 0.087 0.913 43 H 0.127 0.873 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.014 0.986 48 H 0.013 0.987 49 H 0.075 0.925 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.211 -1.648 23.307 30.249 hybrid contribution -0.432 0.977 -2.240 2.481 sum -19.643 -0.671 21.067 28.812 Atomic orbital electron populations 1.22928 0.79589 1.03662 1.00934 1.87918 1.21327 1.28523 1.95603 1.23301 0.93926 0.85005 1.02348 1.21945 0.90805 0.94092 0.87885 0.88644 1.86656 1.81223 1.53791 1.16336 1.22543 0.87852 0.95871 1.03088 1.60427 1.05632 1.18756 1.47243 1.20817 0.88215 0.90210 1.02591 1.19640 0.96068 1.00870 0.91835 1.21013 0.92805 0.99057 0.98512 1.21339 0.95716 1.05613 0.95893 1.18669 0.83436 1.02832 0.92268 1.86186 1.17223 1.87861 1.34428 1.23342 0.98833 1.02068 0.83316 1.18867 0.91404 1.02435 0.84939 1.86178 1.37710 1.87741 1.13538 1.22828 0.94553 0.99808 0.81643 1.18953 0.94905 0.95770 0.91202 1.21403 0.94388 1.50898 0.91360 0.90984 1.26093 0.96149 0.94319 1.03359 1.70147 1.10202 1.50389 1.26411 0.85203 0.79045 0.77866 0.77722 1.17903 1.20192 1.20278 1.21103 0.91314 1.06588 1.00220 0.89085 0.92753 0.93259 0.90488 0.91745 0.76829 0.88118 0.93541 0.83840 0.87962 0.94110 0.82517 0.81951 0.91298 0.87251 0.91100 0.92415 0.92284 0.98586 0.98696 0.92462 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.47 10.67 -144.34 -1.54 -9.01 16 3 C 0.03 0.39 5.57 71.99 0.40 0.79 16 4 C 0.11 1.74 3.52 30.60 0.11 1.85 16 5 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 6 O -0.57 -11.51 12.64 -144.34 -1.82 -13.33 16 7 C 0.04 0.45 5.39 86.31 0.47 0.91 16 8 N -0.69 -12.47 6.49 -517.92 -3.36 -15.83 16 9 C 0.11 1.94 5.81 85.56 0.50 2.44 16 10 C -0.08 -2.00 5.39 -19.86 -0.11 -2.11 16 11 C -0.10 -2.04 9.69 22.27 0.22 -1.83 16 12 C -0.17 -4.01 9.04 22.35 0.20 -3.81 16 13 C 0.07 2.45 6.70 22.57 0.15 2.60 16 14 O -0.34 -11.73 10.28 -79.68 -0.82 -12.55 16 15 C 0.02 0.38 9.81 113.37 1.11 1.49 16 16 C 0.07 2.64 6.70 22.57 0.15 2.79 16 17 O -0.34 -15.75 9.92 -79.54 -0.79 -16.54 16 18 C 0.09 3.99 4.68 71.98 0.34 4.33 16 19 C 0.03 1.66 5.34 29.85 0.16 1.81 16 20 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 21 H 0.07 3.86 7.74 -2.91 -0.02 3.83 16 22 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 23 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 24 Si 0.98 44.07 29.54 68.60 2.03 46.10 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 28 C -0.17 -5.42 8.69 22.35 0.19 -5.23 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.38 5.14 9.05 -74.05 -0.67 4.47 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.34 7.48 8.11 -89.69 -0.73 6.76 16 38 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 39 H 0.04 0.71 8.08 -2.39 -0.02 0.70 16 40 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.16 2.72 6.30 -2.91 -0.02 2.70 16 42 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 43 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 45 H 0.06 2.51 7.66 -2.38 -0.02 2.49 16 46 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 47 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 49 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 50 H 0.13 4.02 6.30 -2.91 -0.02 4.00 16 Total: -1.00 -78.98 416.31 -0.65 -79.62 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.46 Total: 22.45 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 5.83 Total: -23.14 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -3.08 Total: -73.61 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -4.97 Total: -51.43 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -78.98 -0.65 -79.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265401233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.545 kcal (2) G-P(sol) polarization free energy of solvation -78.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds