Wall clock time and date at job start Tue Mar 31 2020 23:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99748 * 2 1 4 4 C 1.53005 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46911 * 54.99690 * 4 3 2 6 6 O 1.42904 * 109.46698 * 294.99847 * 4 3 2 7 7 C 1.53000 * 109.46841 * 175.00157 * 4 3 2 8 8 N 1.46900 * 109.46755 * 184.99689 * 7 4 3 9 9 C 1.46903 * 110.99799 * 179.97438 * 8 7 4 10 10 C 1.50699 * 109.47055 * 180.02562 * 9 8 7 11 11 C 1.38247 * 119.92810 * 90.00549 * 10 9 8 12 12 C 1.38242 * 120.14942 * 179.97438 * 11 10 9 13 13 C 1.38565 * 119.99815 * 0.02562 * 12 11 10 14 14 O 1.35996 * 120.07637 * 179.97438 * 13 12 11 15 15 C 1.42898 * 116.99713 * 0.02562 * 14 13 12 16 16 C 1.39160 * 119.85398 * 0.02562 * 13 12 11 17 17 O 1.35995 * 120.07175 * 180.02562 * 16 13 12 18 18 C 1.42903 * 116.99587 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99611 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00327 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99743 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46725 * 60.00093 * 24 22 20 26 26 H 1.48505 * 109.46988 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47116 * 300.00069 * 24 22 20 28 28 C 1.38250 * 119.92447 * 270.29732 * 10 9 8 29 29 H 1.09003 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47163 * 300.00090 * 1 2 3 31 31 H 1.08997 * 109.47797 * 59.99503 * 1 2 3 32 32 H 1.08997 * 109.47178 * 60.00705 * 3 2 1 33 33 H 1.08994 * 109.47167 * 300.00413 * 3 2 1 34 34 H 0.96696 * 114.00028 * 299.99801 * 6 4 3 35 35 H 1.09004 * 109.47243 * 65.00083 * 7 4 3 36 36 H 1.08999 * 109.47024 * 304.99624 * 7 4 3 37 37 H 1.00906 * 110.99744 * 56.04935 * 8 7 4 38 38 H 1.08996 * 109.46953 * 60.00167 * 9 8 7 39 39 H 1.08998 * 109.47061 * 300.00182 * 9 8 7 40 40 H 1.08004 * 119.92623 * 359.97438 * 11 10 9 41 41 H 1.07997 * 120.00411 * 179.97438 * 12 11 10 42 42 H 1.09002 * 109.46922 * 59.99615 * 15 14 13 43 43 H 1.09000 * 109.47236 * 180.02562 * 15 14 13 44 44 H 1.09005 * 109.47392 * 300.00389 * 15 14 13 45 45 H 1.09002 * 109.47382 * 60.00075 * 18 17 16 46 46 H 1.09001 * 109.46938 * 300.00061 * 18 17 16 47 47 H 1.09001 * 109.47194 * 299.99575 * 19 18 17 48 48 H 1.08992 * 109.47399 * 59.99748 * 19 18 17 49 49 H 0.97000 * 120.00354 * 180.02562 * 23 22 20 50 50 H 1.07994 * 120.00382 * 0.02830 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5685 -0.8426 6 8 3.9657 0.5793 1.2202 7 6 4.1572 2.5770 -0.1263 8 7 5.6159 2.4527 -0.2473 9 6 6.2483 3.7728 -0.3708 10 6 7.7410 3.6053 -0.4931 11 6 8.3196 3.4673 -1.7411 12 6 9.6884 3.3139 -1.8586 13 6 10.4837 3.2976 -0.7240 14 8 11.8304 3.1463 -0.8378 15 6 12.3586 3.0098 -2.1586 16 6 9.9012 3.4355 0.5322 17 8 10.6776 3.4207 1.6487 18 6 10.0110 3.5668 2.9043 19 6 11.0403 3.5268 4.0357 20 6 10.3373 3.6803 5.3598 21 1 9.2639 3.7953 5.3912 22 6 11.0645 3.6739 6.5312 23 7 12.3716 3.5334 6.4930 24 14 10.1933 3.8649 8.1725 25 1 9.2202 2.7568 8.3482 26 1 11.1921 3.8247 9.2708 27 1 9.4749 5.1641 8.2034 28 6 8.5280 3.5839 0.6433 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.7191 1.0746 2.0132 35 1 3.9149 3.1645 0.7593 36 1 3.7602 3.0736 -1.0117 37 1 5.8650 1.8586 -1.0240 38 1 6.0205 4.3689 0.5128 39 1 5.8658 4.2773 -1.2580 40 1 7.7008 3.4794 -2.6262 41 1 10.1379 3.2058 -2.8347 42 1 12.1133 3.8976 -2.7415 43 1 13.4414 2.8963 -2.1069 44 1 11.9238 2.1310 -2.6348 45 1 9.2968 2.7535 3.0334 46 1 9.4837 4.5205 2.9268 47 1 11.5680 2.5733 4.0133 48 1 11.7541 4.3402 3.9064 49 1 12.8832 3.5285 7.3171 50 1 8.0730 3.6867 1.6173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265401234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:17 Heat of formation + Delta-G solvation = -150.062378 kcal Electronic energy + Delta-G solvation = -28816.148348 eV Core-core repulsion = 24616.271713 eV Total energy + Delta-G solvation = -4199.876635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30837 -39.02951 -38.12191 -37.58558 -36.81750 -35.06425 -33.30134 -31.54167 -30.58509 -30.02851 -29.23530 -27.69683 -26.93342 -25.49538 -24.94486 -23.61947 -22.39980 -22.04457 -21.08659 -20.44914 -18.23628 -17.46357 -16.94947 -16.90289 -16.45367 -16.39169 -15.96450 -15.80456 -15.65671 -15.27384 -14.94437 -14.86667 -14.56064 -14.43870 -14.42983 -14.07009 -13.80912 -13.40327 -13.06184 -12.70759 -12.51810 -12.35612 -12.25414 -12.09431 -11.97971 -11.83368 -11.46052 -11.41398 -11.13014 -11.05223 -10.90738 -10.79956 -10.75050 -10.50490 -10.22941 -10.11209 -9.76116 -9.58704 -9.23428 -8.65542 -8.48078 -8.37690 -7.46733 -6.03273 -4.07631 1.43594 1.59753 3.12956 3.33391 3.37389 3.39339 3.44938 3.77931 3.86748 4.12512 4.25388 4.46279 4.53121 4.67210 4.68733 4.77582 4.82812 4.89759 4.90878 4.96683 5.00720 5.06303 5.16428 5.18507 5.21546 5.25476 5.26642 5.32802 5.45339 5.51471 5.58988 5.62350 5.69023 5.86859 6.11638 6.14573 6.32872 6.35024 6.63103 6.64667 6.73298 6.79897 6.89077 7.12050 7.37000 7.53990 7.62487 7.73891 7.90395 8.17215 8.31842 8.97813 9.56003 11.08286 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.006406 B = 0.002758 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4370.087943 B =10151.325038 C =14038.626501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.029 3.971 4 C 0.113 3.887 5 H 0.103 0.897 6 O -0.538 6.538 7 C 0.030 3.970 8 N -0.672 5.672 9 C 0.106 3.894 10 C -0.084 4.084 11 C -0.126 4.126 12 C -0.175 4.175 13 C 0.091 3.909 14 O -0.302 6.302 15 C 0.028 3.972 16 C 0.119 3.881 17 O -0.304 6.304 18 C 0.064 3.936 19 C 0.026 3.974 20 C -0.525 4.525 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.890 5.890 24 Si 0.898 3.102 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.276 1.276 28 C -0.153 4.153 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.373 0.627 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.344 0.656 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.097 0.903 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.028 0.972 48 H 0.027 0.973 49 H 0.263 0.737 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.878 -0.882 -21.073 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.049 4.049 4 C 0.053 3.947 5 H 0.121 0.879 6 O -0.342 6.342 7 C -0.100 4.100 8 N -0.304 5.304 9 C -0.022 4.022 10 C -0.085 4.085 11 C -0.145 4.145 12 C -0.194 4.194 13 C 0.045 3.955 14 O -0.216 6.216 15 C -0.067 4.067 16 C 0.072 3.928 17 O -0.218 6.218 18 C -0.010 4.010 19 C -0.011 4.011 20 C -0.563 4.563 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.173 4.173 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.163 0.837 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.073 0.927 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.903 -1.567 -20.493 27.257 hybrid contribution -1.424 1.094 0.086 1.798 sum -19.327 -0.473 -20.407 28.111 Atomic orbital electron populations 1.22777 0.81069 1.02961 0.99868 1.87972 1.19543 1.27023 1.95338 1.23294 0.95200 0.85517 1.00853 1.21839 0.89554 0.93647 0.89650 0.87870 1.86687 1.80851 1.51872 1.14761 1.22589 0.89121 0.96804 1.01502 1.60340 1.06702 1.12990 1.50337 1.20802 0.90266 0.90338 1.00808 1.19298 0.94407 1.02200 0.92555 1.20531 0.93937 1.03449 0.96555 1.20888 0.94376 1.07441 0.96722 1.18354 0.83189 1.02314 0.91625 1.86250 1.18327 1.87816 1.29175 1.23011 0.99930 1.00516 0.83267 1.18462 0.89653 0.98582 0.86113 1.86281 1.35715 1.86475 1.13279 1.23336 0.97965 0.99296 0.80360 1.19104 0.93788 0.98886 0.89313 1.20940 0.93658 1.51271 0.90430 0.92425 1.24988 0.94854 0.95033 0.99334 1.69970 1.05467 1.49368 1.27976 0.86559 0.79244 0.78736 0.82888 1.20061 1.21177 1.20160 1.21014 0.91329 1.05112 0.99807 0.89446 0.94032 0.94185 0.92790 0.92614 0.77990 0.90238 0.94402 0.83721 0.90108 0.94556 0.86501 0.85306 0.93099 0.88422 0.93057 0.93015 0.93321 0.95365 0.95437 0.92714 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.64 10.67 -40.09 -0.43 -4.06 16 3 C 0.03 0.21 5.57 37.16 0.21 0.42 16 4 C 0.11 0.96 3.43 -26.73 -0.09 0.87 16 5 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 6 O -0.54 -6.03 13.25 -40.09 -0.53 -6.56 16 7 C 0.03 0.22 5.32 -3.82 -0.02 0.20 16 8 N -0.67 -6.74 6.44 -115.06 -0.74 -7.48 16 9 C 0.11 1.08 5.81 -4.97 -0.03 1.05 16 10 C -0.08 -1.09 5.39 -104.62 -0.56 -1.65 16 11 C -0.13 -1.49 9.69 -39.58 -0.38 -1.87 16 12 C -0.18 -2.27 9.04 -39.46 -0.36 -2.62 16 13 C 0.09 1.51 6.70 -39.12 -0.26 1.25 16 14 O -0.30 -5.06 10.28 -34.23 -0.35 -5.41 16 15 C 0.03 0.30 9.81 101.05 0.99 1.29 16 16 C 0.12 2.23 6.70 -39.12 -0.26 1.97 16 17 O -0.30 -6.77 9.92 -34.23 -0.34 -7.10 16 18 C 0.06 1.45 4.68 37.16 0.17 1.62 16 19 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 20 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 21 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 24 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C -0.15 -2.47 8.69 -39.46 -0.34 -2.82 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.37 3.04 9.04 45.56 0.41 3.45 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.34 3.31 8.72 -39.29 -0.34 2.97 16 38 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 42 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 45 H 0.05 1.12 7.66 -51.93 -0.40 0.72 16 46 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 47 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.14 2.24 6.30 -52.49 -0.33 1.91 16 LS Contribution 417.31 15.07 6.29 6.29 Total: -1.00 -35.13 417.31 -8.41 -43.54 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.64 Total: 2.52 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.39 Total: -12.07 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.00 Total: -33.76 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.65 Total: -23.14 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.13 -8.41 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265401234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.522 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds