Wall clock time and date at job start Tue Mar 31 2020 22:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53001 * 109.47018 * 270.00354 * 3 2 1 6 6 C 1.50697 * 109.46859 * 150.00027 * 3 2 1 7 7 N 1.29024 * 124.91290 * 224.71462 * 6 3 2 8 8 C 1.31783 * 117.12326 * 179.81758 * 7 6 3 9 9 C 1.50701 * 122.75320 * 180.23236 * 8 7 6 10 10 N 1.46908 * 109.46885 * 275.24326 * 9 8 7 11 11 C 1.47904 * 110.99978 * 297.96817 * 10 9 8 12 12 C 1.50798 * 108.50176 * 153.79087 * 11 10 9 13 13 C 1.53697 * 112.10285 * 92.54749 * 12 11 10 14 14 N 1.48063 * 112.46930 * 318.55538 * 13 12 11 15 15 C 1.46900 * 111.00074 * 192.19746 * 14 13 12 16 16 C 1.50698 * 109.47030 * 297.69021 * 15 14 13 17 17 H 1.07995 * 119.99906 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99684 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00389 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99631 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47077 * 59.99953 * 20 18 16 22 22 H 1.48503 * 109.46795 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47113 * 299.99940 * 20 18 16 24 24 C 1.44581 * 113.85819 * 318.31595 * 14 13 12 25 25 C 1.40010 * 110.99828 * 169.99386 * 10 9 8 26 26 C 1.33637 * 114.50136 * 0.47697 * 8 7 6 27 27 S 1.70979 * 124.91756 * 45.02850 * 6 3 2 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 31 31 H 1.09001 * 109.46736 * 179.97438 * 5 3 2 32 32 H 1.08998 * 109.46767 * 299.99763 * 5 3 2 33 33 H 1.08995 * 109.47219 * 60.00003 * 5 3 2 34 34 H 1.08996 * 109.46886 * 35.23906 * 9 8 7 35 35 H 1.08996 * 109.47440 * 155.24343 * 9 8 7 36 36 H 1.09002 * 109.63040 * 273.49627 * 11 10 9 37 37 H 1.08998 * 109.63562 * 34.08308 * 11 10 9 38 38 H 1.09000 * 108.95024 * 331.87368 * 12 11 10 39 39 H 1.09003 * 108.88974 * 213.17802 * 12 11 10 40 40 H 1.08997 * 108.88164 * 197.78575 * 13 12 11 41 41 H 1.08994 * 108.88427 * 79.32032 * 13 12 11 42 42 H 1.08997 * 109.47052 * 57.68813 * 15 14 13 43 43 H 1.09005 * 109.47322 * 177.68749 * 15 14 13 44 44 H 0.96996 * 119.99781 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.56981 * 334.42377 * 24 14 13 46 46 H 1.08994 * 109.68318 * 214.10109 * 24 14 13 47 47 H 1.08997 * 108.96399 * 308.76940 * 25 10 9 48 48 H 1.09008 * 108.95477 * 67.51559 * 25 10 9 49 49 H 1.08001 * 126.04087 * 179.78871 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2637 0.7104 7 7 3.7397 2.1306 1.5779 8 6 4.9313 1.9426 2.1084 9 6 5.5220 2.8728 3.1365 10 7 6.1768 3.9996 2.4585 11 6 7.2912 3.5304 1.6067 12 6 7.4954 4.5274 0.4938 13 6 8.5435 5.5916 0.8559 14 7 8.4118 6.0632 2.2533 15 6 9.2220 7.2671 2.4812 16 6 10.6775 6.9412 2.2661 17 1 10.9712 5.9398 1.9882 18 6 11.6342 7.9213 2.4250 19 7 11.2765 9.1406 2.7638 20 14 13.4385 7.5171 2.1590 21 1 13.6392 7.0421 0.7663 22 1 14.2575 8.7342 2.3893 23 1 13.8528 6.4538 3.1091 24 6 7.0442 6.2718 2.6736 25 6 6.5381 4.9949 3.3745 26 6 5.5751 0.8624 1.6563 27 16 4.5357 0.0652 0.4779 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 2.6607 2.7673 -1.4425 32 1 2.8829 1.0774 -1.9563 33 1 1.2569 1.8015 -1.9563 34 1 4.7298 3.2490 3.7838 35 1 6.2554 2.3334 3.7358 36 1 8.2009 3.4551 2.2024 37 1 7.0447 2.5561 1.1849 38 1 6.5471 5.0216 0.2829 39 1 7.8240 3.9965 -0.3997 40 1 8.4289 6.4424 0.1843 41 1 9.5384 5.1680 0.7190 42 1 8.9175 8.0474 1.7838 43 1 9.0750 7.6159 3.5035 44 1 11.9496 9.8301 2.8753 45 1 6.4226 6.4813 1.8030 46 1 6.9972 7.1118 3.3665 47 1 5.6708 5.2462 3.9850 48 1 7.3270 4.6112 4.0215 49 1 6.5586 0.5353 1.9601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267693687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:25 Heat of formation + Delta-G solvation = 21.999375 kcal Electronic energy + Delta-G solvation = -27516.732515 eV Core-core repulsion = 23799.362659 eV Total energy + Delta-G solvation = -3717.369856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35706 -38.93869 -38.32989 -35.67763 -33.01007 -32.54364 -31.96432 -30.39724 -28.50214 -27.29096 -26.90729 -25.36661 -25.30741 -24.24092 -21.96472 -21.83061 -20.28941 -19.93519 -19.16207 -17.94760 -16.71278 -16.41166 -16.33127 -16.08516 -15.69827 -15.25913 -15.01777 -14.73503 -14.40047 -14.24835 -13.96752 -13.57133 -13.34170 -13.17679 -12.99037 -12.94536 -12.61022 -12.57394 -12.10394 -12.00659 -11.89775 -11.66154 -11.45516 -11.25473 -11.11751 -10.87970 -10.75452 -10.66897 -10.52150 -10.27859 -10.20766 -10.10027 -9.75193 -9.69149 -9.45590 -9.14273 -8.88711 -8.40983 -7.92533 -7.04329 -6.00200 -4.01398 0.52601 1.22520 1.64159 2.57832 3.05365 3.34089 3.38077 3.40913 4.05800 4.28181 4.44371 4.52833 4.68254 4.75688 4.89711 4.96723 4.98188 5.03211 5.16376 5.22622 5.27893 5.31698 5.35088 5.35142 5.45636 5.48489 5.62354 5.75074 5.76341 5.84596 5.90676 5.97799 6.10018 6.12990 6.21448 6.39015 6.49791 6.56836 6.62025 6.70369 6.82139 7.35332 7.36198 7.42911 7.64881 7.68223 7.85908 8.17955 8.28328 8.67387 9.06222 9.62770 11.10504 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.002183 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.538563 B =12823.678852 C =12997.722013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.164 3.836 4 H 0.092 0.908 5 C -0.169 4.169 6 C 0.039 3.961 7 N -0.446 5.446 8 C 0.088 3.912 9 C 0.133 3.867 10 N -0.542 5.542 11 C 0.067 3.933 12 C -0.118 4.118 13 C 0.076 3.924 14 N -0.553 5.553 15 C 0.199 3.801 16 C -0.506 4.506 17 H 0.061 0.939 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.067 3.933 25 C 0.078 3.922 26 C -0.259 4.259 27 S 0.149 5.851 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.024 0.976 41 H 0.071 0.929 42 H -0.011 1.011 43 H 0.030 0.970 44 H 0.261 0.739 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.032 0.968 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.646 -19.252 -5.452 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.103 3.897 4 H 0.109 0.891 5 C -0.227 4.227 6 C -0.239 4.239 7 N -0.162 5.162 8 C -0.045 4.045 9 C 0.003 3.997 10 N -0.267 5.267 11 C -0.059 4.059 12 C -0.157 4.157 13 C -0.052 4.052 14 N -0.278 5.278 15 C 0.074 3.926 16 C -0.545 4.545 17 H 0.079 0.921 18 C -0.147 4.147 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.063 4.063 25 C -0.052 4.052 26 C -0.399 4.399 27 S 0.404 5.596 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.006 0.994 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.050 0.950 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -20.871 -19.826 -5.929 29.391 hybrid contribution 1.514 1.034 0.527 1.908 sum -19.357 -18.792 -5.403 27.514 Atomic orbital electron populations 1.22842 0.79993 1.03171 1.00417 1.87909 1.20463 1.26601 1.95124 1.20278 0.88625 0.85771 0.95030 0.89059 1.22287 1.03160 1.02673 0.94604 1.26596 1.01023 0.96018 1.00236 1.65972 1.15082 1.26546 1.08553 1.20094 0.89628 0.95168 0.99649 1.20517 0.97495 0.90047 0.91652 1.59171 1.31402 1.10196 1.25910 1.21822 0.92120 0.97092 0.94883 1.21464 0.99765 0.97177 0.97246 1.22175 0.98416 0.95744 0.88818 1.60797 1.08613 1.37328 1.21056 1.19743 0.92022 0.84724 0.96117 1.21150 0.90966 0.96168 1.46219 0.92068 1.24997 0.99164 0.94999 0.95530 1.69946 1.33841 1.01855 1.48236 0.86579 0.84722 0.77556 0.78637 1.20341 1.21396 1.20234 1.21779 0.90487 0.95278 0.98732 1.21022 0.98297 0.92520 0.93368 1.27048 1.05953 1.01632 1.05305 1.83952 1.08538 1.28524 1.38564 0.89183 0.93593 0.93588 0.90525 0.91333 0.91174 0.89354 0.93142 0.92714 0.91854 0.91743 0.92238 0.95808 0.91082 0.99366 0.95244 0.92928 0.94413 0.91506 0.91931 0.95037 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.39 10.18 -35.23 -0.36 -3.74 16 3 C 0.16 1.49 3.24 -27.88 -0.09 1.40 16 4 H 0.09 0.79 7.79 -51.93 -0.40 0.38 16 5 C -0.17 -1.28 9.51 37.16 0.35 -0.93 16 6 C 0.04 0.45 6.34 -13.46 -0.09 0.36 16 7 N -0.45 -5.93 10.53 -8.06 -0.08 -6.02 16 8 C 0.09 1.11 5.57 -84.22 -0.47 0.64 16 9 C 0.13 1.69 5.41 -4.97 -0.03 1.66 16 10 N -0.54 -8.08 4.09 -241.21 -0.99 -9.06 16 11 C 0.07 1.02 5.16 -4.37 -0.02 1.00 16 12 C -0.12 -1.92 5.36 -27.47 -0.15 -2.06 16 13 C 0.08 1.52 4.99 -2.82 -0.01 1.50 16 14 N -0.55 -12.01 3.96 -235.75 -0.93 -12.94 16 15 C 0.20 5.23 4.58 -4.98 -0.02 5.21 16 16 C -0.51 -14.29 8.61 -34.44 -0.30 -14.59 16 17 H 0.06 1.71 6.87 -52.49 -0.36 1.35 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.07 1.26 5.45 -4.44 -0.02 1.23 16 25 C 0.08 1.24 5.04 -6.75 -0.03 1.21 16 26 C -0.26 -2.83 9.30 29.12 0.27 -2.56 16 27 S 0.15 1.51 23.01 -107.50 -2.47 -0.96 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.20 7.87 -51.93 -0.41 -0.21 16 30 H 0.05 0.23 8.09 -51.93 -0.42 -0.19 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 34 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 35 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.05 0.93 7.57 -51.93 -0.39 0.53 16 37 H 0.06 0.86 5.22 -51.93 -0.27 0.59 16 38 H 0.06 1.09 7.23 -51.93 -0.38 0.71 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.02 0.50 7.97 -51.93 -0.41 0.09 16 41 H 0.07 1.50 7.00 -51.93 -0.36 1.13 16 42 H -0.01 -0.32 8.06 -51.93 -0.42 -0.74 16 43 H 0.03 0.83 7.79 -51.93 -0.40 0.42 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.04 0.71 6.93 -51.93 -0.36 0.35 16 46 H 0.07 1.27 7.41 -51.93 -0.38 0.88 16 47 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 48 H 0.03 0.54 8.06 -51.92 -0.42 0.13 16 49 H 0.18 1.60 8.00 -52.49 -0.42 1.18 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -31.60 395.13 -11.06 -42.66 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -8.29 Total: -3.28 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 0.39 Total: -3.20 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -1.27 Total: -54.21 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.36 Total: -3.74 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.60 -11.06 -42.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267693687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.661 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds