Wall clock time and date at job start Tue Mar 31 2020 23:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00177 * 2 1 4 4 C 1.52999 * 109.47446 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47270 * 174.99783 * 4 3 2 6 6 C 1.52999 * 109.46798 * 54.99836 * 4 3 2 7 7 O 1.42901 * 109.47136 * 305.00072 * 6 4 3 8 8 N 1.46895 * 109.46837 * 295.00071 * 4 3 2 9 9 C 1.46906 * 110.99789 * 204.99698 * 8 4 3 10 10 C 1.50703 * 109.47109 * 179.97438 * 9 8 4 11 11 C 1.38252 * 119.92564 * 89.99969 * 10 9 8 12 12 C 1.38242 * 120.14559 * 179.97438 * 11 10 9 13 13 C 1.38567 * 119.99732 * 0.02881 * 12 11 10 14 14 O 1.35994 * 120.06800 * 179.97438 * 13 12 11 15 15 C 1.42898 * 117.00187 * 0.02562 * 14 13 12 16 16 C 1.39150 * 119.85449 * 359.97438 * 13 12 11 17 17 O 1.36000 * 120.06888 * 180.02562 * 16 13 12 18 18 C 1.42906 * 116.99794 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.46970 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46760 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00141 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99580 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00041 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99626 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46908 * 90.00223 * 24 22 20 26 26 H 1.48503 * 109.46988 * 209.99691 * 24 22 20 27 27 H 1.48495 * 109.47273 * 329.99944 * 24 22 20 28 28 C 1.38242 * 119.92591 * 269.72845 * 10 9 8 29 29 H 1.09003 * 109.46939 * 300.00159 * 1 2 3 30 30 H 1.09000 * 109.47196 * 59.99945 * 1 2 3 31 31 H 1.09005 * 109.47411 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47475 * 59.99756 * 3 2 1 33 33 H 1.09005 * 109.47232 * 300.00365 * 3 2 1 34 34 H 1.09001 * 109.47484 * 65.00432 * 6 4 3 35 35 H 1.09000 * 109.47039 * 185.00409 * 6 4 3 36 36 H 0.96704 * 113.99778 * 180.02562 * 7 6 4 37 37 H 1.00902 * 111.00273 * 328.95220 * 8 4 3 38 38 H 1.08992 * 109.47459 * 299.99826 * 9 8 4 39 39 H 1.09004 * 109.47040 * 59.99976 * 9 8 4 40 40 H 1.08002 * 119.92701 * 359.97438 * 11 10 9 41 41 H 1.08001 * 119.99844 * 180.02562 * 12 11 10 42 42 H 1.09005 * 109.46919 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47157 * 299.99114 * 15 14 13 44 44 H 1.08994 * 109.47755 * 59.99603 * 15 14 13 45 45 H 1.08999 * 109.46839 * 300.00116 * 18 17 16 46 46 H 1.08999 * 109.47029 * 59.99872 * 18 17 16 47 47 H 1.08995 * 109.46965 * 299.99874 * 19 18 17 48 48 H 1.08998 * 109.46823 * 60.00037 * 19 18 17 49 49 H 0.97003 * 119.99878 * 179.97438 * 23 22 20 50 50 H 1.08003 * 120.00038 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0903 6 6 3.9780 0.3198 -1.1826 7 8 3.3066 -0.9405 -1.1284 8 7 3.9778 0.5623 1.2543 9 6 5.3599 0.9449 1.5730 10 6 5.7775 0.2894 2.8642 11 6 6.3722 -0.9585 2.8433 12 6 6.7576 -1.5638 4.0249 13 6 6.5475 -0.9199 5.2338 14 8 6.9255 -1.5142 6.3971 15 6 7.5344 -2.8033 6.2991 16 6 5.9489 0.3361 5.2547 17 8 5.7411 0.9722 6.4387 18 6 5.1211 2.2587 6.3839 19 6 4.9708 2.8131 7.8019 20 6 4.3176 4.1700 7.7441 21 1 4.0374 4.5942 6.7913 22 6 4.0778 4.8698 8.9076 23 7 4.4187 4.3530 10.0679 24 14 3.2675 6.5514 8.8359 25 1 1.7932 6.3943 8.9198 26 1 3.7427 7.3787 9.9739 27 1 3.6224 7.2178 7.5573 28 6 5.5702 0.9397 4.0664 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.7284 0.8246 -2.1159 35 1 5.0551 0.1600 -1.1328 36 1 3.5399 -1.5418 -1.8490 37 1 3.3542 0.7946 2.0127 38 1 6.0213 0.6203 0.7699 39 1 5.4217 2.0280 1.6793 40 1 6.5360 -1.4616 1.9018 41 1 7.2223 -2.5385 4.0058 42 1 7.7871 -3.1625 7.2967 43 1 6.8397 -3.4983 5.8276 44 1 8.4411 -2.7323 5.6984 45 1 5.7387 2.9347 5.7926 46 1 4.1374 2.1686 5.9232 47 1 4.3530 2.1370 8.3928 48 1 5.9544 2.9031 8.2630 49 1 4.2503 4.8455 10.8865 50 1 5.1091 1.9162 4.0796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279646613.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:20 Heat of formation + Delta-G solvation = -167.087680 kcal Electronic energy + Delta-G solvation = -29566.823447 eV Core-core repulsion = 25366.208540 eV Total energy + Delta-G solvation = -4200.614908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51804 -39.59282 -39.45766 -38.32109 -37.32091 -35.95302 -35.44652 -32.75271 -32.23222 -30.88725 -29.94653 -28.16795 -27.64437 -27.05530 -26.23537 -25.29638 -23.94300 -22.53021 -21.89477 -21.35234 -19.52402 -18.63505 -18.30839 -17.84635 -17.56452 -17.19129 -17.12270 -16.87785 -16.65145 -16.53348 -16.33576 -15.64466 -15.39822 -15.35299 -15.09294 -15.06508 -14.54265 -14.33188 -14.21317 -14.06964 -14.03002 -13.31969 -13.26202 -13.19437 -13.03546 -12.75624 -12.66918 -12.61347 -12.48648 -12.17549 -12.02623 -11.94637 -11.85324 -11.60346 -11.58666 -11.49968 -11.40630 -10.63043 -10.60272 -10.36542 -9.67824 -9.25796 -8.70118 -8.26982 -6.41356 0.31077 0.47876 1.39671 1.42677 1.53690 2.27021 2.43425 2.51397 2.66881 2.96798 3.07113 3.36392 3.58837 3.81834 3.86785 4.00875 4.08522 4.14892 4.24038 4.25467 4.28494 4.41079 4.42836 4.44277 4.46334 4.52521 4.59310 4.61772 4.61998 4.68004 4.71749 4.73503 4.74817 4.82106 4.87930 4.91214 4.94538 5.21155 5.29870 5.32045 5.45508 5.62560 5.67792 5.80992 6.04747 6.09448 6.25242 6.37073 6.47284 6.71778 6.74793 7.23910 7.28793 8.86505 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.007389 B = 0.003006 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3788.626107 B = 9312.674547 C =12280.943763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.367 6.367 3 C 0.059 3.941 4 C 0.081 3.919 5 H 0.086 0.914 6 C 0.094 3.906 7 O -0.555 6.555 8 N -0.672 5.672 9 C 0.108 3.892 10 C -0.080 4.080 11 C -0.094 4.094 12 C -0.167 4.167 13 C 0.074 3.926 14 O -0.342 6.342 15 C 0.019 3.981 16 C 0.070 3.930 17 O -0.337 6.337 18 C 0.086 3.914 19 C 0.030 3.970 20 C -0.545 4.545 21 H 0.072 0.928 22 C 0.000 4.000 23 N -0.932 5.932 24 Si 0.978 3.022 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.257 1.257 28 C -0.173 4.173 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.376 0.624 37 H 0.338 0.662 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.057 0.943 47 H -0.006 1.006 48 H -0.005 1.005 49 H 0.267 0.733 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.706 -11.413 -27.039 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.285 6.285 3 C -0.019 4.019 4 C -0.028 4.028 5 H 0.104 0.896 6 C 0.015 3.985 7 O -0.360 6.360 8 N -0.304 5.304 9 C -0.020 4.020 10 C -0.081 4.081 11 C -0.113 4.113 12 C -0.185 4.185 13 C 0.028 3.972 14 O -0.257 6.257 15 C -0.075 4.075 16 C 0.024 3.976 17 O -0.252 6.252 18 C 0.012 3.988 19 C -0.007 4.007 20 C -0.583 4.583 21 H 0.090 0.910 22 C -0.198 4.198 23 N -0.572 5.572 24 Si 0.801 3.199 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.181 1.181 28 C -0.192 4.192 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.222 0.778 37 H 0.156 0.844 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.170 0.830 41 H 0.180 0.820 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.013 0.987 48 H 0.014 0.986 49 H 0.076 0.924 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.763 -11.856 -26.239 28.804 hybrid contribution -0.448 1.657 0.472 1.780 sum 0.315 -10.200 -25.767 27.714 Atomic orbital electron populations 1.22815 0.81773 1.02895 0.99782 1.88233 1.18774 1.26353 1.95134 1.22685 0.93006 0.85780 1.00397 1.21921 0.93520 0.96474 0.90898 0.89637 1.22053 0.95342 0.85525 0.95592 1.86829 1.69074 1.26755 1.53293 1.60429 1.02276 1.62948 1.04795 1.20895 0.90854 0.96707 0.93538 1.19610 0.99417 0.95436 0.93595 1.20965 0.97986 0.94152 0.98187 1.21319 1.05073 1.01973 0.90147 1.18640 1.00145 0.91477 0.86913 1.86180 1.75777 1.34966 1.28752 1.23337 0.97693 0.81279 1.05239 1.18845 1.00530 0.92038 0.86150 1.86183 1.76792 1.33668 1.28541 1.22828 0.95694 0.80379 0.99931 1.18938 0.95839 0.95199 0.90730 1.21386 1.40616 1.02324 0.93947 0.90987 1.26088 0.96032 1.03010 0.94692 1.70139 1.48099 1.40326 0.98591 0.85255 0.78540 0.77711 0.78366 1.19501 1.20641 1.18119 1.21088 1.05342 1.01638 0.91141 0.94709 0.93528 0.89593 0.93948 0.91694 0.92736 0.93521 0.77807 0.84415 0.88557 0.94033 0.83009 0.82040 0.87197 0.91352 0.91127 0.92299 0.92440 0.98708 0.98623 0.92430 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.65 16 2 O -0.37 -8.04 8.21 -126.65 -1.04 -9.08 16 3 C 0.06 1.02 5.49 71.98 0.39 1.41 16 4 C 0.08 1.32 2.90 44.92 0.13 1.45 16 5 H 0.09 1.08 7.80 -2.39 -0.02 1.06 16 6 C 0.09 1.32 6.80 71.98 0.49 1.81 16 7 O -0.56 -10.09 11.17 -126.65 -1.41 -11.50 16 8 N -0.67 -13.91 6.19 -495.57 -3.07 -16.98 16 9 C 0.11 2.10 5.61 85.56 0.48 2.58 16 10 C -0.08 -2.02 5.39 -19.86 -0.11 -2.13 16 11 C -0.09 -2.17 9.69 22.27 0.22 -1.96 16 12 C -0.17 -4.18 9.04 22.35 0.20 -3.98 16 13 C 0.07 2.51 6.70 22.57 0.15 2.66 16 14 O -0.34 -11.90 10.28 -79.62 -0.82 -12.72 16 15 C 0.02 0.39 9.81 113.37 1.11 1.50 16 16 C 0.07 2.71 6.70 22.57 0.15 2.86 16 17 O -0.34 -15.88 9.92 -79.69 -0.79 -16.67 16 18 C 0.09 4.01 4.68 71.98 0.34 4.35 16 19 C 0.03 1.73 5.34 29.85 0.16 1.89 16 20 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 21 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 22 C 0.00 0.01 5.46 84.66 0.46 0.47 16 23 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 24 Si 0.98 44.03 29.54 68.60 2.03 46.05 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 28 C -0.17 -5.54 8.69 22.35 0.19 -5.34 16 29 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.04 0.75 8.02 -2.38 -0.02 0.73 16 33 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.59 7.35 -2.39 -0.02 0.57 16 36 H 0.38 3.77 9.12 -74.05 -0.68 3.09 16 37 H 0.34 7.97 8.27 -89.69 -0.74 7.22 16 38 H 0.10 1.52 7.30 -2.39 -0.02 1.50 16 39 H 0.04 0.77 7.99 -2.38 -0.02 0.75 16 40 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.16 2.90 6.30 -2.91 -0.02 2.88 16 42 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 44 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 45 H 0.06 2.55 7.65 -2.39 -0.02 2.53 16 46 H 0.06 2.51 7.68 -2.39 -0.02 2.49 16 47 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 48 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 50 H 0.13 4.10 6.30 -2.91 -0.02 4.08 16 Total: -1.00 -78.60 410.71 0.56 -78.04 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.47 Total: 22.76 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 5.85 Total: -22.07 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -2.78 Total: -74.81 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -4.06 Total: -49.97 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -78.60 0.56 -78.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279646613.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.051 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds