Wall clock time and date at job start Tue Mar 31 2020 23:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35896 * 117.00669 * 2 1 4 4 C 1.38795 * 120.02194 * 0.02820 * 3 2 1 5 5 C 1.38158 * 120.05552 * 179.97438 * 4 3 2 6 6 C 1.38197 * 120.10556 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.97182 * 180.02562 * 6 5 4 8 8 N 1.46891 * 109.47293 * 254.92489 * 7 6 5 9 9 C 1.46900 * 111.00516 * 199.49992 * 8 7 6 10 10 C 1.52995 * 109.47264 * 75.83758 * 9 8 7 11 11 O 1.42903 * 109.47059 * 65.26458 * 10 9 8 12 12 C 1.46902 * 111.00149 * 75.54450 * 8 7 6 13 13 C 1.52998 * 109.47440 * 190.00465 * 12 8 7 14 14 O 1.42896 * 109.47255 * 64.99561 * 13 12 8 15 15 C 1.42906 * 114.00002 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47136 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00108 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00097 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99901 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00087 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46601 * 120.00076 * 20 18 16 23 23 H 1.48501 * 109.47269 * 239.99470 * 20 18 16 24 24 C 1.38753 * 120.05752 * 359.97438 * 6 5 4 25 25 O 1.35901 * 120.02546 * 180.27487 * 24 6 5 26 26 C 1.42902 * 116.99416 * 179.72791 * 25 24 6 27 27 C 1.38609 * 120.03350 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46982 * 299.99731 * 1 2 3 29 29 H 1.09002 * 109.47450 * 59.99280 * 1 2 3 30 30 H 1.08993 * 109.47864 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.97370 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.94791 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47172 * 14.92878 * 7 6 5 34 34 H 1.09002 * 109.47006 * 134.92410 * 7 6 5 35 35 H 1.09001 * 109.47423 * 195.84552 * 9 8 7 36 36 H 1.08998 * 109.46642 * 315.84196 * 9 8 7 37 37 H 1.08994 * 109.47302 * 185.26306 * 10 9 8 38 38 H 1.08999 * 109.47323 * 305.26605 * 10 9 8 39 39 H 0.96693 * 114.00425 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.47044 * 310.00328 * 12 8 7 41 41 H 1.08996 * 109.47239 * 69.99900 * 12 8 7 42 42 H 1.08999 * 109.47398 * 185.00022 * 13 12 8 43 43 H 1.09005 * 109.46753 * 304.99703 * 13 12 8 44 44 H 1.09004 * 109.46938 * 300.00162 * 15 14 13 45 45 H 1.08998 * 109.46892 * 59.99795 * 15 14 13 46 46 H 0.97000 * 120.00201 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.47618 * 300.00274 * 26 25 24 48 48 H 1.08999 * 109.46948 * 60.00704 * 26 25 24 49 49 H 1.09001 * 109.47042 * 180.02562 * 26 25 24 50 50 H 1.07999 * 120.05480 * 0.04928 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 0.0006 5 6 1.9173 3.6065 0.0011 6 6 3.2972 3.6820 0.0016 7 6 3.9776 5.0267 0.0028 8 7 4.5205 5.3020 -1.3341 9 6 5.5596 6.3388 -1.2772 10 6 6.8497 5.7376 -0.7159 11 8 7.3523 4.7557 -1.6244 12 6 3.4518 5.6785 -2.2690 13 6 4.0092 5.7137 -3.6934 14 8 4.4055 4.3971 -4.0826 15 6 4.9437 4.3189 -5.4041 16 6 5.3253 2.8929 -5.7074 17 1 5.1726 2.1234 -4.9652 18 6 5.8704 2.5708 -6.9322 19 7 6.0569 3.5079 -7.8359 20 14 6.3442 0.8034 -7.3080 21 1 6.0350 -0.0522 -6.1343 22 1 5.5758 0.3246 -8.4851 23 1 7.7977 0.7326 -7.6036 24 6 4.0567 2.5208 0.0021 25 8 5.4137 2.5958 0.0082 26 6 6.1316 1.3603 0.0144 27 6 3.4301 1.2840 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 0.2121 2.3187 0.0006 32 1 1.3278 4.5114 0.0020 33 1 3.2556 5.7990 0.2678 34 1 4.7890 5.0227 0.7307 35 1 5.7443 6.7236 -2.2802 36 1 5.2267 7.1516 -0.6318 37 1 7.5913 6.5257 -0.5861 38 1 6.6439 5.2701 0.2469 39 1 8.1706 4.3316 -1.3321 40 1 2.6453 4.9474 -2.2125 41 1 3.0681 6.6638 -2.0045 42 1 3.2410 6.0784 -4.3753 43 1 4.8723 6.3785 -3.7294 44 1 4.1951 4.6548 -6.1217 45 1 5.8262 4.9546 -5.4752 46 1 6.4407 3.2814 -8.6975 47 1 5.8657 0.7899 0.9044 48 1 5.8740 0.7860 -0.8756 49 1 7.2027 1.5624 0.0193 50 1 4.0196 0.3790 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293223673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:56 Heat of formation + Delta-G solvation = -127.062696 kcal Electronic energy + Delta-G solvation = -31364.718744 eV Core-core repulsion = 27165.839449 eV Total energy + Delta-G solvation = -4198.879294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.43558 -38.88941 -38.09654 -36.44847 -36.25767 -35.19227 -32.55943 -31.37132 -30.21963 -29.82046 -28.20035 -27.25734 -27.01261 -26.43146 -24.39254 -22.36592 -22.08792 -21.97038 -21.26643 -19.93954 -18.55016 -17.07506 -16.73534 -16.25474 -16.11598 -15.97131 -15.89052 -15.56193 -15.32497 -15.19786 -15.01465 -14.55695 -14.18622 -13.93471 -13.82960 -13.60647 -13.09332 -12.94978 -12.79335 -12.64031 -12.47207 -12.33014 -11.99656 -11.87161 -11.64584 -11.56855 -11.33401 -11.15097 -10.94022 -10.80334 -10.66092 -10.64217 -10.55389 -10.34456 -10.20103 -9.80739 -9.47654 -8.87788 -8.60182 -8.42358 -7.91761 -7.83137 -7.73317 -5.95034 -3.93740 1.47682 1.61117 3.19786 3.38087 3.43804 3.51768 3.57990 3.78893 4.31634 4.49468 4.66824 4.80544 4.96742 5.02665 5.06566 5.07215 5.11782 5.22129 5.32341 5.35286 5.38480 5.41331 5.41585 5.45989 5.50327 5.59028 5.66602 5.71598 5.74987 5.79151 5.85212 5.89615 5.92928 6.04058 6.22844 6.26972 6.32445 6.45454 6.50940 6.55675 6.75870 7.31452 7.35298 7.45347 7.48456 7.65785 7.66410 7.98329 8.17756 8.37193 8.85291 9.22865 9.70049 11.17159 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.007902 B = 0.004363 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3542.586828 B = 6416.336665 C = 7919.988407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.164 3.836 4 C -0.249 4.249 5 C -0.040 4.040 6 C -0.141 4.141 7 C 0.110 3.890 8 N -0.501 5.501 9 C 0.051 3.949 10 C 0.089 3.911 11 O -0.536 6.536 12 C 0.061 3.939 13 C 0.070 3.930 14 O -0.371 6.371 15 C 0.196 3.804 16 C -0.498 4.498 17 H 0.065 0.935 18 C 0.053 3.947 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.203 3.797 25 O -0.285 6.285 26 C 0.028 3.972 27 C -0.246 4.246 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.364 0.636 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.035 0.965 44 H -0.003 1.003 45 H 0.002 0.998 46 H 0.260 0.740 47 H 0.047 0.953 48 H 0.059 0.941 49 H 0.097 0.903 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 1.377 21.775 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.118 3.882 4 C -0.268 4.268 5 C -0.059 4.059 6 C -0.143 4.143 7 C -0.018 4.018 8 N -0.225 5.225 9 C -0.076 4.076 10 C 0.010 3.990 11 O -0.338 6.338 12 C -0.067 4.067 13 C -0.009 4.009 14 O -0.290 6.290 15 C 0.122 3.878 16 C -0.536 4.536 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.543 5.543 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C 0.156 3.844 25 O -0.196 6.196 26 C -0.067 4.067 27 C -0.266 4.266 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.208 0.792 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.020 0.980 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.286 0.966 21.193 22.127 hybrid contribution 0.131 -0.207 -0.078 0.257 sum -6.154 0.759 21.115 22.007 Atomic orbital electron populations 1.23025 0.78500 1.03659 1.01418 1.86040 1.21326 1.27272 1.88580 1.18624 0.91537 0.83976 0.94051 1.20961 0.99654 0.92135 1.14088 1.20561 0.92838 0.96990 0.95473 1.18920 0.92245 0.93489 1.09618 1.20778 0.97358 0.92140 0.91492 1.61740 1.11427 1.42633 1.06684 1.22185 0.91587 0.91929 1.01946 1.22029 0.94033 0.90588 0.92365 1.86849 1.44063 1.56160 1.46710 1.22151 0.94071 0.98175 0.92265 1.22227 0.96981 0.88425 0.93228 1.87992 1.82266 1.24056 1.34656 1.20114 0.92074 0.97538 0.78120 1.21086 1.39782 0.93385 0.99373 0.91678 1.24917 0.95988 0.97839 0.95892 1.69983 1.45515 1.32517 1.06308 0.86352 0.77972 0.84413 0.78180 1.19553 1.21055 1.20970 1.18365 0.82914 0.92010 0.91116 1.86214 1.14566 1.31697 1.87167 1.23032 0.96812 0.85849 1.01032 1.20356 0.92607 0.97696 1.15913 0.92802 0.92445 0.88488 0.85756 0.85698 0.94813 0.90351 0.89680 0.94334 0.94839 0.94144 0.79215 0.90174 0.94934 0.94939 0.94740 0.98488 0.98026 0.93011 0.93443 0.92210 0.88456 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.30 10.49 -19.41 -0.20 -4.51 16 3 C 0.16 2.39 6.68 -39.24 -0.26 2.13 16 4 C -0.25 -3.24 9.04 -39.40 -0.36 -3.60 16 5 C -0.04 -0.52 8.98 -39.63 -0.36 -0.88 16 6 C -0.14 -2.08 4.83 -104.44 -0.50 -2.59 16 7 C 0.11 1.49 4.55 -4.98 -0.02 1.47 16 8 N -0.50 -8.14 4.25 -236.08 -1.00 -9.15 16 9 C 0.05 0.74 5.21 -3.83 -0.02 0.72 16 10 C 0.09 1.20 7.23 37.15 0.27 1.46 16 11 O -0.54 -9.06 13.61 -35.23 -0.48 -9.54 16 12 C 0.06 1.01 5.17 -3.82 -0.02 0.99 16 13 C 0.07 1.43 6.02 37.16 0.22 1.65 16 14 O -0.37 -9.83 10.27 -35.23 -0.36 -10.19 16 15 C 0.20 5.79 5.69 36.00 0.20 6.00 16 16 C -0.50 -15.58 9.43 -34.44 -0.32 -15.91 16 17 H 0.06 2.07 7.81 -52.48 -0.41 1.66 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -28.27 13.29 55.43 0.74 -27.53 16 20 Si 0.90 22.94 29.54 -169.99 -5.02 17.92 16 21 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 24 C 0.20 3.22 6.66 -39.24 -0.26 2.96 16 25 O -0.29 -4.41 9.82 -19.43 -0.19 -4.60 16 26 C 0.03 0.34 9.81 101.05 0.99 1.33 16 27 C -0.25 -3.78 8.97 -39.29 -0.35 -4.13 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.12 1.29 6.29 -52.49 -0.33 0.96 16 32 H 0.13 1.31 8.00 -52.49 -0.42 0.89 16 33 H 0.03 0.39 7.81 -51.93 -0.41 -0.01 16 34 H 0.08 1.01 6.31 -51.93 -0.33 0.69 16 35 H 0.08 1.39 5.81 -51.93 -0.30 1.08 16 36 H 0.04 0.45 8.00 -51.93 -0.42 0.03 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.04 0.51 6.66 -51.93 -0.35 0.16 16 39 H 0.36 4.45 9.12 45.56 0.42 4.87 16 40 H 0.08 1.39 6.87 -51.93 -0.36 1.03 16 41 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.70 6.08 -51.93 -0.32 0.38 16 44 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 45 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 48 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 49 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.13 1.88 6.30 -52.49 -0.33 1.55 16 LS Contribution 407.11 15.07 6.14 6.14 Total: -1.00 -37.94 407.11 -7.51 -45.45 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.23 Total: 1.62 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 0.10 Total: -5.61 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.27 Total: -36.68 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.24 Total: -28.84 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.94 -7.51 -45.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293223673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.610 kcal (2) G-P(sol) polarization free energy of solvation -37.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds