Wall clock time and date at job start Tue Mar 31 2020 23:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35896 * 117.00669 * 2 1 4 4 C 1.38795 * 120.02194 * 0.02820 * 3 2 1 5 5 C 1.38158 * 120.05552 * 179.97438 * 4 3 2 6 6 C 1.38197 * 120.10556 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.97182 * 180.02562 * 6 5 4 8 8 N 1.46891 * 109.47293 * 254.92489 * 7 6 5 9 9 C 1.46900 * 111.00516 * 199.49992 * 8 7 6 10 10 C 1.52995 * 109.47264 * 75.83758 * 9 8 7 11 11 O 1.42903 * 109.47059 * 65.26458 * 10 9 8 12 12 C 1.46902 * 111.00149 * 75.54450 * 8 7 6 13 13 C 1.52998 * 109.47440 * 190.00465 * 12 8 7 14 14 O 1.42896 * 109.47255 * 64.99561 * 13 12 8 15 15 C 1.42906 * 114.00002 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47136 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00108 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00097 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99901 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00087 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46601 * 120.00076 * 20 18 16 23 23 H 1.48501 * 109.47269 * 239.99470 * 20 18 16 24 24 C 1.38753 * 120.05752 * 359.97438 * 6 5 4 25 25 O 1.35901 * 120.02546 * 180.27487 * 24 6 5 26 26 C 1.42902 * 116.99416 * 179.72791 * 25 24 6 27 27 C 1.38609 * 120.03350 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46982 * 299.99731 * 1 2 3 29 29 H 1.09002 * 109.47450 * 59.99280 * 1 2 3 30 30 H 1.08993 * 109.47864 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.97370 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.94791 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47172 * 14.92878 * 7 6 5 34 34 H 1.09002 * 109.47006 * 134.92410 * 7 6 5 35 35 H 1.09001 * 109.47423 * 195.84552 * 9 8 7 36 36 H 1.08998 * 109.46642 * 315.84196 * 9 8 7 37 37 H 1.08994 * 109.47302 * 185.26306 * 10 9 8 38 38 H 1.08999 * 109.47323 * 305.26605 * 10 9 8 39 39 H 0.96693 * 114.00425 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.47044 * 310.00328 * 12 8 7 41 41 H 1.08996 * 109.47239 * 69.99900 * 12 8 7 42 42 H 1.08999 * 109.47398 * 185.00022 * 13 12 8 43 43 H 1.09005 * 109.46753 * 304.99703 * 13 12 8 44 44 H 1.09004 * 109.46938 * 300.00162 * 15 14 13 45 45 H 1.08998 * 109.46892 * 59.99795 * 15 14 13 46 46 H 0.97000 * 120.00201 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.47618 * 300.00274 * 26 25 24 48 48 H 1.08999 * 109.46948 * 60.00704 * 26 25 24 49 49 H 1.09001 * 109.47042 * 180.02562 * 26 25 24 50 50 H 1.07999 * 120.05480 * 0.04928 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 0.0006 5 6 1.9173 3.6065 0.0011 6 6 3.2972 3.6820 0.0016 7 6 3.9776 5.0267 0.0028 8 7 4.5205 5.3020 -1.3341 9 6 5.5596 6.3388 -1.2772 10 6 6.8497 5.7376 -0.7159 11 8 7.3523 4.7557 -1.6244 12 6 3.4518 5.6785 -2.2690 13 6 4.0092 5.7137 -3.6934 14 8 4.4055 4.3971 -4.0826 15 6 4.9437 4.3189 -5.4041 16 6 5.3253 2.8929 -5.7074 17 1 5.1726 2.1234 -4.9652 18 6 5.8704 2.5708 -6.9322 19 7 6.0569 3.5079 -7.8359 20 14 6.3442 0.8034 -7.3080 21 1 6.0350 -0.0522 -6.1343 22 1 5.5758 0.3246 -8.4851 23 1 7.7977 0.7326 -7.6036 24 6 4.0567 2.5208 0.0021 25 8 5.4137 2.5958 0.0082 26 6 6.1316 1.3603 0.0144 27 6 3.4301 1.2840 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 0.2121 2.3187 0.0006 32 1 1.3278 4.5114 0.0020 33 1 3.2556 5.7990 0.2678 34 1 4.7890 5.0227 0.7307 35 1 5.7443 6.7236 -2.2802 36 1 5.2267 7.1516 -0.6318 37 1 7.5913 6.5257 -0.5861 38 1 6.6439 5.2701 0.2469 39 1 8.1706 4.3316 -1.3321 40 1 2.6453 4.9474 -2.2125 41 1 3.0681 6.6638 -2.0045 42 1 3.2410 6.0784 -4.3753 43 1 4.8723 6.3785 -3.7294 44 1 4.1951 4.6548 -6.1217 45 1 5.8262 4.9546 -5.4752 46 1 6.4407 3.2814 -8.6975 47 1 5.8657 0.7899 0.9044 48 1 5.8740 0.7860 -0.8756 49 1 7.2027 1.5624 0.0193 50 1 4.0196 0.3790 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293223673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:54 Heat of formation + Delta-G solvation = -157.164754 kcal Electronic energy + Delta-G solvation = -31366.024067 eV Core-core repulsion = 27165.839449 eV Total energy + Delta-G solvation = -4200.184617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.46016 -39.91060 -39.36183 -38.05395 -37.48030 -36.49635 -34.86690 -32.47751 -31.42148 -31.07614 -29.51023 -28.79504 -28.03871 -27.80840 -25.55815 -24.42556 -23.58482 -23.05234 -22.36486 -21.14417 -19.54911 -18.60368 -18.23507 -17.75892 -17.41391 -17.26690 -17.04555 -16.89558 -16.59668 -16.32495 -16.29090 -16.10320 -15.59197 -15.49516 -15.16479 -14.78590 -14.48079 -14.21046 -14.09533 -13.82369 -13.59688 -13.49650 -13.35221 -13.18319 -13.02480 -12.81140 -12.72804 -12.71320 -12.43626 -12.30739 -12.21873 -11.99960 -11.82824 -11.66767 -11.56727 -11.37477 -11.19131 -10.82528 -10.60132 -10.08255 -9.49138 -8.92678 -8.79980 -8.29468 -6.40013 0.42393 0.55147 1.36627 1.39051 1.53891 2.28860 2.35972 2.58978 2.71867 3.03545 3.18205 3.36785 3.65305 3.85063 3.96849 4.12991 4.16707 4.24370 4.27483 4.29574 4.38953 4.40858 4.42552 4.43665 4.53122 4.56867 4.59493 4.65494 4.66201 4.67794 4.74510 4.76181 4.79369 4.82488 4.87148 4.91135 5.04483 5.11092 5.24081 5.24849 5.42178 5.52716 5.58074 5.74621 6.02275 6.30623 6.36284 6.40340 6.60815 6.62405 6.93861 7.19475 7.32019 8.83605 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.007902 B = 0.004363 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3542.586828 B = 6416.336665 C = 7919.988407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.150 3.850 4 C -0.250 4.250 5 C -0.039 4.039 6 C -0.159 4.159 7 C 0.116 3.884 8 N -0.530 5.530 9 C 0.049 3.951 10 C 0.088 3.912 11 O -0.576 6.576 12 C 0.072 3.928 13 C 0.059 3.941 14 O -0.388 6.388 15 C 0.215 3.785 16 C -0.534 4.534 17 H 0.051 0.949 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.268 1.268 23 H -0.268 1.268 24 C 0.182 3.818 25 O -0.301 6.301 26 C 0.025 3.975 27 C -0.270 4.270 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.378 0.622 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.033 0.967 44 H -0.021 1.021 45 H -0.024 1.024 46 H 0.270 0.730 47 H 0.067 0.933 48 H 0.038 0.962 49 H 0.116 0.884 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 1.389 22.968 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.105 3.895 4 C -0.269 4.269 5 C -0.057 4.057 6 C -0.161 4.161 7 C -0.011 4.011 8 N -0.255 5.255 9 C -0.079 4.079 10 C 0.010 3.990 11 O -0.381 6.381 12 C -0.056 4.056 13 C -0.018 4.018 14 O -0.308 6.308 15 C 0.140 3.860 16 C -0.572 4.572 17 H 0.070 0.930 18 C -0.191 4.191 19 N -0.572 5.572 20 Si 0.802 3.198 21 H -0.193 1.193 22 H -0.194 1.194 23 H -0.193 1.193 24 C 0.135 3.865 25 O -0.213 6.213 26 C -0.069 4.069 27 C -0.289 4.289 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.225 0.775 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.051 0.949 44 H -0.003 1.003 45 H -0.007 1.007 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.134 0.866 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.208 0.996 22.408 23.560 hybrid contribution 0.370 -0.172 -0.420 0.586 sum -6.837 0.824 21.989 23.042 Atomic orbital electron populations 1.23341 0.76266 1.05493 1.02365 1.86012 1.23710 1.27067 1.88479 1.18842 0.91576 0.85000 0.94125 1.21300 1.00987 0.91599 1.13016 1.20944 0.92498 0.98168 0.94129 1.19254 0.93092 0.93737 1.09988 1.20776 0.98051 0.92197 0.90050 1.61621 1.11846 1.43921 1.08103 1.22258 0.91744 0.92583 1.01290 1.22183 0.94229 0.90637 0.91974 1.86794 1.45340 1.57362 1.48596 1.22021 0.93734 1.00048 0.89783 1.22608 0.97270 0.85732 0.96195 1.87952 1.82176 1.27862 1.32766 1.19689 0.90482 0.96435 0.79430 1.21297 1.41902 0.93850 1.00154 0.93046 1.25906 0.94938 1.03114 0.95095 1.70082 1.45199 1.35053 1.06859 0.85202 0.78416 0.77886 0.78293 1.19319 1.19355 1.19322 1.18687 0.83186 0.92726 0.91948 1.86169 1.14777 1.33014 1.87366 1.23167 0.97612 0.85224 1.00944 1.20527 0.93504 0.97797 1.17114 0.90988 0.92232 0.86386 0.83128 0.82761 0.92039 0.89925 0.92271 0.90868 0.92405 0.93114 0.77490 0.90968 0.91007 0.94201 0.94854 1.00318 1.00652 0.92139 0.91441 0.94350 0.86579 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -9.01 10.49 -92.38 -0.97 -9.98 16 3 C 0.15 4.36 6.68 22.49 0.15 4.51 16 4 C -0.25 -6.12 9.04 22.38 0.20 -5.92 16 5 C -0.04 -0.94 8.98 22.24 0.20 -0.74 16 6 C -0.16 -4.53 4.83 -19.75 -0.10 -4.63 16 7 C 0.12 2.91 4.55 85.56 0.39 3.30 16 8 N -0.53 -16.62 4.25 -900.82 -3.83 -20.45 16 9 C 0.05 1.34 5.21 86.30 0.45 1.79 16 10 C 0.09 2.28 7.23 71.98 0.52 2.80 16 11 O -0.58 -19.80 13.61 -148.98 -2.03 -21.82 16 12 C 0.07 2.29 5.17 86.30 0.45 2.73 16 13 C 0.06 2.46 6.02 71.98 0.43 2.90 16 14 O -0.39 -21.32 10.27 -148.98 -1.53 -22.85 16 15 C 0.21 13.26 5.69 71.23 0.41 13.67 16 16 C -0.53 -34.51 9.43 25.60 0.24 -34.27 16 17 H 0.05 3.38 7.81 -2.91 -0.02 3.36 16 18 C 0.01 0.45 5.46 84.65 0.46 0.91 16 19 N -0.93 -58.93 13.29 21.45 0.28 -58.65 16 20 Si 0.98 47.21 29.54 68.60 2.03 49.24 16 21 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.18 5.83 6.66 22.49 0.15 5.98 16 25 O -0.30 -9.52 9.82 -92.44 -0.91 -10.43 16 26 C 0.03 0.64 9.81 113.37 1.11 1.75 16 27 C -0.27 -8.53 8.97 22.46 0.20 -8.32 16 28 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 29 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.15 2.74 6.29 -2.91 -0.02 2.72 16 32 H 0.15 2.70 8.00 -2.91 -0.02 2.67 16 33 H 0.06 1.19 7.81 -2.39 -0.02 1.17 16 34 H 0.08 1.98 6.31 -2.39 -0.02 1.96 16 35 H 0.06 1.92 5.81 -2.39 -0.01 1.91 16 36 H 0.07 1.47 8.00 -2.39 -0.02 1.46 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.20 6.66 -2.39 -0.02 1.19 16 39 H 0.38 9.49 9.12 -74.06 -0.68 8.82 16 40 H 0.07 2.41 6.87 -2.39 -0.02 2.39 16 41 H 0.07 1.73 8.12 -2.39 -0.02 1.71 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.03 1.39 6.08 -2.38 -0.01 1.38 16 44 H -0.02 -1.33 8.14 -2.38 -0.02 -1.34 16 45 H -0.02 -1.58 8.14 -2.39 -0.02 -1.60 16 46 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 47 H 0.07 1.38 7.67 -2.39 -0.02 1.37 16 48 H 0.04 1.11 7.65 -2.39 -0.02 1.09 16 49 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.13 3.94 6.30 -2.91 -0.02 3.93 16 Total: -1.00 -84.55 407.11 -0.31 -84.86 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.27 Total: 22.20 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 6.38 Total: -12.11 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -3.55 Total: -79.10 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -5.44 Total: -65.09 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -84.55 -0.31 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293223673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.305 kcal (2) G-P(sol) polarization free energy of solvation -84.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds