Wall clock time and date at job start Tue Mar 31 2020 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 116.99789 * 2 1 4 4 C 1.38662 * 120.04226 * 0.25225 * 3 2 1 5 5 C 1.38235 * 120.08740 * 180.25387 * 4 3 2 6 6 C 1.38234 * 120.17764 * 359.74617 * 5 4 3 7 7 C 1.38665 * 120.08945 * 0.02562 * 6 5 4 8 8 O 1.35997 * 120.04751 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99689 * 359.97438 * 8 7 6 10 10 C 1.38977 * 120.04511 * 180.02562 * 3 2 1 11 11 O 1.36098 * 120.08745 * 0.02562 * 10 3 2 12 12 C 1.42892 * 116.99930 * 269.72147 * 11 10 3 13 13 C 1.53006 * 109.47199 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.46764 * 55.00026 * 13 12 11 15 15 O 1.42901 * 109.47080 * 295.00534 * 13 12 11 16 16 C 1.52995 * 109.47277 * 175.00042 * 13 12 11 17 17 N 1.46901 * 109.47049 * 185.00332 * 16 13 12 18 18 C 1.46895 * 111.00231 * 66.04958 * 17 16 13 19 19 C 1.46903 * 110.99984 * 190.00178 * 17 16 13 20 20 H 1.09007 * 109.47052 * 54.99665 * 19 17 16 21 21 C 1.53000 * 109.47096 * 295.00215 * 19 17 16 22 22 C 1.50694 * 109.47066 * 174.99980 * 19 17 16 23 23 H 1.08000 * 120.00563 * 359.97438 * 22 19 17 24 24 C 1.37885 * 119.99902 * 180.02562 * 22 19 17 25 25 N 1.31516 * 119.99913 * 359.97438 * 24 22 19 26 26 Si 1.86798 * 119.99766 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.47353 * 269.99586 * 26 24 22 28 28 H 1.48501 * 109.47293 * 30.00037 * 26 24 22 29 29 H 1.48504 * 109.46680 * 149.99835 * 26 24 22 30 30 H 1.08996 * 109.47127 * 60.00174 * 1 2 3 31 31 H 1.09005 * 109.46579 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47015 * 300.00070 * 1 2 3 33 33 H 1.07998 * 119.96431 * 0.02562 * 4 3 2 34 34 H 1.07995 * 119.91222 * 179.76917 * 5 4 3 35 35 H 1.07997 * 119.95503 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47138 * 300.00382 * 9 8 7 37 37 H 1.09000 * 109.47036 * 59.99954 * 9 8 7 38 38 H 1.09003 * 109.47013 * 179.97438 * 9 8 7 39 39 H 1.09007 * 109.47160 * 60.00518 * 12 11 10 40 40 H 1.08999 * 109.47489 * 300.00126 * 12 11 10 41 41 H 0.96696 * 113.99963 * 299.99646 * 15 13 12 42 42 H 1.09007 * 109.47170 * 65.00396 * 16 13 12 43 43 H 1.09000 * 109.47305 * 305.00726 * 16 13 12 44 44 H 1.08998 * 109.47176 * 183.95703 * 18 17 16 45 45 H 1.09001 * 109.46775 * 303.95460 * 18 17 16 46 46 H 1.09003 * 109.47375 * 63.94911 * 18 17 16 47 47 H 1.08995 * 109.47131 * 180.02562 * 21 19 17 48 48 H 1.09002 * 109.47106 * 299.99893 * 21 19 17 49 49 H 1.08998 * 109.47089 * 59.99840 * 21 19 17 50 50 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0053 5 6 1.9186 3.6075 0.0000 6 6 3.2987 3.6852 -0.0053 7 6 4.0603 2.5265 -0.0058 8 8 5.4181 2.6040 -0.0105 9 6 5.9931 3.9122 -0.0153 10 6 3.4342 1.2857 -0.0005 11 8 4.1782 0.1460 -0.0016 12 6 4.5385 -0.3946 1.2711 13 6 5.3662 -1.6656 1.0695 14 1 6.2229 -1.4441 0.4330 15 8 4.5577 -2.6670 0.4484 16 6 5.8568 -2.1752 2.4260 17 7 6.7490 -3.3246 2.2238 18 6 7.9821 -2.9193 1.5360 19 6 7.0513 -3.9873 3.4995 20 1 6.1205 -4.2604 3.9966 21 6 7.8462 -3.0337 4.3938 22 6 7.8653 -5.2287 3.2402 23 1 8.1312 -5.4987 2.2288 24 6 8.2699 -6.0205 4.2940 25 7 7.9457 -5.6920 5.5256 26 14 9.2783 -7.5597 3.9725 27 1 8.3676 -8.7163 3.7770 28 1 10.1016 -7.3660 2.7518 29 1 10.1673 -7.8203 5.1330 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2135 2.3188 0.0098 34 1 1.3282 4.5118 0.0004 35 1 3.7844 4.6498 -0.0098 36 1 5.6659 4.4497 -0.9053 37 1 5.6719 4.4535 0.8746 38 1 7.0801 3.8312 -0.0182 39 1 3.6356 -0.6348 1.8326 40 1 5.1261 0.3382 1.8240 41 1 3.7755 -2.9142 0.9602 42 1 5.0024 -2.4805 3.0302 43 1 6.3987 -1.3803 2.9385 44 1 8.5930 -3.7996 1.3364 45 1 7.7294 -2.4313 0.5947 46 1 8.5388 -2.2260 2.1666 47 1 8.0709 -3.5256 5.3401 48 1 8.7771 -2.7606 3.8967 49 1 7.2575 -2.1358 4.5813 50 1 8.2300 -6.2493 6.2669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345875013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:44 Heat of formation + Delta-G solvation = -116.142961 kcal Electronic energy + Delta-G solvation = -30372.337851 eV Core-core repulsion = 26173.932072 eV Total energy + Delta-G solvation = -4198.405779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95593 -39.23119 -38.52719 -37.36771 -36.52464 -35.62681 -32.65829 -30.93362 -29.88462 -29.80086 -28.30262 -28.09203 -26.94916 -26.20070 -25.11121 -23.79150 -22.50920 -22.15332 -21.08431 -19.29655 -18.96661 -17.48974 -17.30186 -16.72198 -16.56836 -16.16179 -15.83489 -15.76548 -15.69044 -15.14341 -15.07318 -15.03541 -14.34128 -14.16468 -13.84949 -13.42237 -13.30304 -13.05429 -12.87452 -12.67079 -12.47345 -12.31139 -12.22091 -11.83850 -11.78682 -11.49929 -11.33249 -11.02954 -11.02389 -11.02108 -10.75152 -10.71437 -10.40114 -10.30656 -9.96649 -9.92419 -9.83165 -9.40633 -8.82175 -8.46504 -8.43479 -8.34000 -7.03478 -5.96683 -3.99535 0.91982 1.07849 2.59339 3.18083 3.35467 3.39772 3.41281 3.45603 3.71640 4.45221 4.48067 4.64882 4.69928 4.74262 4.82552 4.86434 4.88412 4.90265 4.97042 5.02522 5.21115 5.23233 5.26881 5.27342 5.35501 5.46125 5.61774 5.66242 5.78767 5.80104 5.90624 6.07249 6.07958 6.15736 6.30522 6.44568 6.51835 6.72011 6.86088 6.88709 6.97714 7.02585 7.15676 7.51947 7.65199 7.75939 7.89202 8.13382 8.22526 8.43753 8.66015 9.06959 9.65288 11.10705 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017576 B = 0.002403 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.695183 B =11650.801099 C =12573.373967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.149 3.851 4 C -0.237 4.237 5 C -0.048 4.048 6 C -0.237 4.237 7 C 0.147 3.853 8 O -0.300 6.300 9 C 0.026 3.974 10 C 0.032 3.968 11 O -0.299 6.299 12 C 0.037 3.963 13 C 0.118 3.882 14 H 0.104 0.896 15 O -0.538 6.538 16 C 0.029 3.971 17 N -0.523 5.523 18 C 0.032 3.968 19 C 0.211 3.789 20 H 0.038 0.962 21 C -0.173 4.173 22 C -0.496 4.496 23 H 0.063 0.937 24 C 0.057 3.943 25 N -0.897 5.897 26 Si 0.897 3.103 27 H -0.281 1.281 28 H -0.274 1.274 29 H -0.289 1.289 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.367 0.633 42 H 0.069 0.931 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.016 0.984 47 H 0.088 0.912 48 H 0.031 0.969 49 H 0.006 0.994 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 22.302 -9.606 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.102 3.898 4 C -0.256 4.256 5 C -0.066 4.066 6 C -0.256 4.256 7 C 0.100 3.900 8 O -0.212 6.212 9 C -0.070 4.070 10 C -0.013 4.013 11 O -0.215 6.215 12 C -0.038 4.038 13 C 0.058 3.942 14 H 0.122 0.878 15 O -0.341 6.341 16 C -0.101 4.101 17 N -0.246 5.246 18 C -0.116 4.116 19 C 0.104 3.896 20 H 0.056 0.944 21 C -0.232 4.232 22 C -0.535 4.535 23 H 0.082 0.918 24 C -0.144 4.144 25 N -0.536 5.536 26 Si 0.725 3.275 27 H -0.207 1.207 28 H -0.199 1.199 29 H -0.215 1.215 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.214 0.786 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.106 0.894 48 H 0.050 0.950 49 H 0.025 0.975 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.239 21.456 -10.331 27.247 hybrid contribution 0.194 0.459 1.244 1.340 sum -13.046 21.915 -9.088 27.075 Atomic orbital electron populations 1.23138 0.78229 1.04372 1.01234 1.86233 1.21269 1.25649 1.87787 1.19075 0.90774 0.85142 0.94775 1.21083 1.00204 0.91724 1.12581 1.20707 0.93629 0.97153 0.95091 1.21073 0.94751 0.97150 1.12608 1.19087 0.83144 0.92749 0.94971 1.86211 1.16536 1.30609 1.87882 1.23136 0.99548 0.82970 1.01300 1.17095 0.86661 0.85244 1.12331 1.86259 1.69601 1.37050 1.28606 1.23595 0.98847 0.96629 0.84777 1.21927 0.92888 0.84166 0.95215 0.87848 1.86623 1.39951 1.58482 1.49046 1.22591 0.98287 0.94278 0.94895 1.62244 1.14207 1.22960 1.25198 1.22288 0.92530 1.00209 0.96609 1.19326 0.95465 0.91634 0.83132 0.94433 1.22412 0.98919 0.97374 1.04511 1.21139 1.32282 1.06794 0.93274 0.91838 1.24933 0.96444 0.97949 0.95068 1.69890 1.46894 1.38499 0.98366 0.86511 0.80011 0.83363 0.77591 1.20694 1.19930 1.21456 0.92552 0.87816 0.92613 0.84881 0.85225 0.84905 0.92501 0.92558 0.87882 0.92892 0.92562 0.78647 0.91207 0.94886 0.90765 0.93691 0.96552 0.89355 0.95029 0.97540 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.64 10.28 -34.33 -0.35 -3.99 16 3 C 0.15 1.84 6.70 -39.15 -0.26 1.58 16 4 C -0.24 -2.20 9.04 -39.43 -0.36 -2.55 16 5 C -0.05 -0.39 10.04 -39.58 -0.40 -0.79 16 6 C -0.24 -2.20 9.04 -39.43 -0.36 -2.56 16 7 C 0.15 1.82 6.70 -39.15 -0.26 1.56 16 8 O -0.30 -3.70 10.28 -34.31 -0.35 -4.06 16 9 C 0.03 0.19 9.81 101.05 0.99 1.18 16 10 C 0.03 0.46 5.75 -39.03 -0.22 0.24 16 11 O -0.30 -4.93 9.59 -48.24 -0.46 -5.39 16 12 C 0.04 0.56 5.70 37.16 0.21 0.77 16 13 C 0.12 2.00 3.21 -26.73 -0.09 1.92 16 14 H 0.10 1.86 6.26 -51.93 -0.33 1.54 16 15 O -0.54 -9.71 13.25 -40.09 -0.53 -10.24 16 16 C 0.03 0.54 4.03 -3.83 -0.02 0.52 16 17 N -0.52 -11.65 4.69 -236.29 -1.11 -12.76 16 18 C 0.03 0.67 8.70 60.06 0.52 1.19 16 19 C 0.21 5.39 2.34 -68.87 -0.16 5.23 16 20 H 0.04 1.05 8.03 -51.92 -0.42 0.64 16 21 C -0.17 -4.24 8.28 37.16 0.31 -3.93 16 22 C -0.50 -13.85 7.94 -34.44 -0.27 -14.13 16 23 H 0.06 1.79 6.75 -52.49 -0.35 1.44 16 24 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 25 N -0.90 -25.82 11.32 55.43 0.63 -25.19 16 26 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 33 H 0.13 0.89 6.29 -52.49 -0.33 0.55 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.89 6.29 -52.49 -0.33 0.56 16 36 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 37 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.37 5.47 9.05 45.56 0.41 5.88 16 42 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 43 H 0.03 0.61 6.94 -51.93 -0.36 0.25 16 44 H 0.07 1.65 6.53 -51.93 -0.34 1.31 16 45 H 0.04 0.84 6.21 -51.93 -0.32 0.52 16 46 H 0.02 0.33 6.28 -51.93 -0.33 0.00 16 47 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 48 H 0.03 0.75 6.39 -51.93 -0.33 0.42 16 49 H 0.01 0.13 6.75 -51.93 -0.35 -0.22 16 50 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 398.06 15.07 6.00 6.00 Total: -1.00 -33.83 398.06 -7.61 -41.44 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.95 Total: 4.56 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 0.54 Total: -7.11 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.48 Total: -37.95 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -1.70 Total: -23.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.83 -7.61 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345875013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.698 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds