Wall clock time and date at job start Tue Mar 31 2020 22:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 116.99789 * 2 1 4 4 C 1.38662 * 120.04226 * 0.25225 * 3 2 1 5 5 C 1.38235 * 120.08740 * 180.25387 * 4 3 2 6 6 C 1.38234 * 120.17764 * 359.74617 * 5 4 3 7 7 C 1.38665 * 120.08945 * 0.02562 * 6 5 4 8 8 O 1.35997 * 120.04751 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99689 * 359.97438 * 8 7 6 10 10 C 1.38977 * 120.04511 * 180.02562 * 3 2 1 11 11 O 1.36098 * 120.08745 * 0.02562 * 10 3 2 12 12 C 1.42892 * 116.99930 * 269.72147 * 11 10 3 13 13 C 1.53006 * 109.47199 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.46764 * 55.00026 * 13 12 11 15 15 O 1.42901 * 109.47080 * 295.00534 * 13 12 11 16 16 C 1.52995 * 109.47277 * 175.00042 * 13 12 11 17 17 N 1.46901 * 109.47049 * 185.00332 * 16 13 12 18 18 C 1.46895 * 111.00231 * 66.04958 * 17 16 13 19 19 C 1.46903 * 110.99984 * 190.00178 * 17 16 13 20 20 H 1.09007 * 109.47052 * 54.99665 * 19 17 16 21 21 C 1.53000 * 109.47096 * 295.00215 * 19 17 16 22 22 C 1.50694 * 109.47066 * 174.99980 * 19 17 16 23 23 H 1.08000 * 120.00563 * 359.97438 * 22 19 17 24 24 C 1.37885 * 119.99902 * 180.02562 * 22 19 17 25 25 N 1.31516 * 119.99913 * 359.97438 * 24 22 19 26 26 Si 1.86798 * 119.99766 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.47353 * 269.99586 * 26 24 22 28 28 H 1.48501 * 109.47293 * 30.00037 * 26 24 22 29 29 H 1.48504 * 109.46680 * 149.99835 * 26 24 22 30 30 H 1.08996 * 109.47127 * 60.00174 * 1 2 3 31 31 H 1.09005 * 109.46579 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47015 * 300.00070 * 1 2 3 33 33 H 1.07998 * 119.96431 * 0.02562 * 4 3 2 34 34 H 1.07995 * 119.91222 * 179.76917 * 5 4 3 35 35 H 1.07997 * 119.95503 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47138 * 300.00382 * 9 8 7 37 37 H 1.09000 * 109.47036 * 59.99954 * 9 8 7 38 38 H 1.09003 * 109.47013 * 179.97438 * 9 8 7 39 39 H 1.09007 * 109.47160 * 60.00518 * 12 11 10 40 40 H 1.08999 * 109.47489 * 300.00126 * 12 11 10 41 41 H 0.96696 * 113.99963 * 299.99646 * 15 13 12 42 42 H 1.09007 * 109.47170 * 65.00396 * 16 13 12 43 43 H 1.09000 * 109.47305 * 305.00726 * 16 13 12 44 44 H 1.08998 * 109.47176 * 183.95703 * 18 17 16 45 45 H 1.09001 * 109.46775 * 303.95460 * 18 17 16 46 46 H 1.09003 * 109.47375 * 63.94911 * 18 17 16 47 47 H 1.08995 * 109.47131 * 180.02562 * 21 19 17 48 48 H 1.09002 * 109.47106 * 299.99893 * 21 19 17 49 49 H 1.08998 * 109.47089 * 59.99840 * 21 19 17 50 50 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0053 5 6 1.9186 3.6075 0.0000 6 6 3.2987 3.6852 -0.0053 7 6 4.0603 2.5265 -0.0058 8 8 5.4181 2.6040 -0.0105 9 6 5.9931 3.9122 -0.0153 10 6 3.4342 1.2857 -0.0005 11 8 4.1782 0.1460 -0.0016 12 6 4.5385 -0.3946 1.2711 13 6 5.3662 -1.6656 1.0695 14 1 6.2229 -1.4441 0.4330 15 8 4.5577 -2.6670 0.4484 16 6 5.8568 -2.1752 2.4260 17 7 6.7490 -3.3246 2.2238 18 6 7.9821 -2.9193 1.5360 19 6 7.0513 -3.9873 3.4995 20 1 6.1205 -4.2604 3.9966 21 6 7.8462 -3.0337 4.3938 22 6 7.8653 -5.2287 3.2402 23 1 8.1312 -5.4987 2.2288 24 6 8.2699 -6.0205 4.2940 25 7 7.9457 -5.6920 5.5256 26 14 9.2783 -7.5597 3.9725 27 1 8.3676 -8.7163 3.7770 28 1 10.1016 -7.3660 2.7518 29 1 10.1673 -7.8203 5.1330 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2135 2.3188 0.0098 34 1 1.3282 4.5118 0.0004 35 1 3.7844 4.6498 -0.0098 36 1 5.6659 4.4497 -0.9053 37 1 5.6719 4.4535 0.8746 38 1 7.0801 3.8312 -0.0182 39 1 3.6356 -0.6348 1.8326 40 1 5.1261 0.3382 1.8240 41 1 3.7755 -2.9142 0.9602 42 1 5.0024 -2.4805 3.0302 43 1 6.3987 -1.3803 2.9385 44 1 8.5930 -3.7996 1.3364 45 1 7.7294 -2.4313 0.5947 46 1 8.5388 -2.2260 2.1666 47 1 8.0709 -3.5256 5.3401 48 1 8.7771 -2.7606 3.8967 49 1 7.2575 -2.1358 4.5813 50 1 8.2300 -6.2493 6.2669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345875013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:43 Heat of formation + Delta-G solvation = -140.980386 kcal Electronic energy + Delta-G solvation = -30373.414882 eV Core-core repulsion = 26173.932072 eV Total energy + Delta-G solvation = -4199.482811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75756 -39.98622 -39.90347 -38.70944 -37.42476 -37.02134 -34.68174 -32.16927 -31.06044 -30.59934 -29.98493 -28.68648 -27.93701 -27.44377 -27.14577 -25.36466 -23.38181 -22.87398 -22.61264 -21.06494 -19.81795 -18.48721 -18.18899 -18.14678 -17.67207 -17.45446 -17.19805 -16.82279 -16.79077 -16.43177 -16.12786 -15.80490 -15.72988 -15.37757 -15.34997 -14.86416 -14.68840 -14.31658 -14.12477 -13.75072 -13.60394 -13.40063 -13.27564 -13.03125 -12.93569 -12.79872 -12.64831 -12.51286 -12.44810 -12.39460 -12.22452 -12.05835 -12.01447 -11.94062 -11.66888 -11.56623 -11.01992 -10.92494 -10.76735 -10.48714 -9.29595 -9.18575 -8.81399 -8.10557 -6.20646 0.13681 0.33034 1.42786 1.43664 1.54058 1.90639 2.30728 2.44564 2.72908 2.77907 3.18740 3.37531 3.60587 3.86590 3.91327 3.99584 4.04000 4.10341 4.11123 4.24439 4.34110 4.37635 4.39093 4.39501 4.40731 4.41346 4.52644 4.58863 4.64210 4.72899 4.75622 4.76032 4.82769 4.87446 5.04554 5.13450 5.15491 5.16596 5.21935 5.37646 5.45413 5.53546 5.71198 5.79642 6.08088 6.18927 6.32577 6.47325 6.68704 6.74863 6.91132 6.94071 7.48312 8.95836 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017576 B = 0.002403 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.695183 B =11650.801099 C =12573.373967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.135 3.865 4 C -0.235 4.235 5 C -0.037 4.037 6 C -0.235 4.235 7 C 0.133 3.867 8 O -0.332 6.332 9 C 0.017 3.983 10 C -0.015 4.015 11 O -0.323 6.323 12 C 0.049 3.951 13 C 0.130 3.870 14 H 0.092 0.908 15 O -0.556 6.556 16 C 0.034 3.966 17 N -0.536 5.536 18 C 0.038 3.962 19 C 0.216 3.784 20 H 0.008 0.992 21 C -0.159 4.159 22 C -0.515 4.515 23 H 0.054 0.946 24 C 0.011 3.989 25 N -0.921 5.921 26 Si 0.959 3.041 27 H -0.277 1.277 28 H -0.270 1.270 29 H -0.282 1.282 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.380 0.620 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.020 0.980 47 H 0.062 0.938 48 H 0.032 0.968 49 H 0.026 0.974 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.897 24.453 -10.158 30.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.088 3.912 4 C -0.254 4.254 5 C -0.055 4.055 6 C -0.254 4.254 7 C 0.086 3.914 8 O -0.245 6.245 9 C -0.077 4.077 10 C -0.060 4.060 11 O -0.239 6.239 12 C -0.027 4.027 13 C 0.070 3.930 14 H 0.110 0.890 15 O -0.361 6.361 16 C -0.095 4.095 17 N -0.259 5.259 18 C -0.110 4.110 19 C 0.109 3.891 20 H 0.026 0.974 21 C -0.218 4.218 22 C -0.553 4.553 23 H 0.073 0.927 24 C -0.187 4.187 25 N -0.561 5.561 26 Si 0.785 3.215 27 H -0.203 1.203 28 H -0.195 1.195 29 H -0.208 1.208 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.227 0.773 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.038 0.962 47 H 0.081 0.919 48 H 0.051 0.949 49 H 0.045 0.955 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.362 23.628 -10.892 29.718 hybrid contribution 0.438 -0.103 1.375 1.447 sum -13.924 23.525 -9.517 28.946 Atomic orbital electron populations 1.23413 0.76049 1.05576 1.02674 1.86180 1.23691 1.26334 1.87946 1.19296 0.90504 0.86171 0.95227 1.21442 1.01468 0.91052 1.11449 1.21221 0.93511 0.98185 0.92587 1.21433 0.95291 0.97201 1.11477 1.19307 0.83505 0.93139 0.95431 1.86158 1.16902 1.33385 1.88050 1.23415 1.00008 0.81531 1.02762 1.17590 0.87618 0.85131 1.15655 1.86194 1.70424 1.38535 1.28794 1.23344 0.98666 0.95588 0.85068 1.21719 0.92805 0.84831 0.93611 0.88997 1.86574 1.40720 1.58966 1.49878 1.22588 0.97603 0.93116 0.96144 1.62118 1.15203 1.24983 1.23634 1.22230 0.91815 0.99540 0.97438 1.19085 0.93746 0.91777 0.84540 0.97444 1.22206 0.99093 0.97665 1.02843 1.21381 1.32878 1.08076 0.92960 0.92747 1.25675 0.97413 1.00740 0.94860 1.70007 1.47583 1.39499 0.98998 0.85543 0.78605 0.79753 0.77636 1.20325 1.19489 1.20782 0.91083 0.86914 0.91045 0.82175 0.81316 0.82190 0.90945 0.91042 0.86976 0.92386 0.92326 0.77254 0.91026 0.94241 0.92528 0.91697 0.96157 0.91883 0.94919 0.95492 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.99 10.28 -79.63 -0.82 -8.81 16 3 C 0.13 3.25 6.70 22.55 0.15 3.40 16 4 C -0.24 -3.78 9.04 22.37 0.20 -3.57 16 5 C -0.04 -0.48 10.04 22.27 0.22 -0.26 16 6 C -0.24 -3.78 9.04 22.37 0.20 -3.57 16 7 C 0.13 3.21 6.70 22.55 0.15 3.36 16 8 O -0.33 -8.11 10.28 -79.57 -0.82 -8.93 16 9 C 0.02 0.22 9.81 113.37 1.11 1.33 16 10 C -0.01 -0.43 5.75 22.63 0.13 -0.30 16 11 O -0.32 -10.97 9.59 -67.71 -0.65 -11.62 16 12 C 0.05 1.51 5.70 71.98 0.41 1.92 16 13 C 0.13 4.47 3.21 30.59 0.10 4.56 16 14 H 0.09 3.36 6.26 -2.39 -0.01 3.34 16 15 O -0.56 -20.38 13.25 -144.34 -1.91 -22.29 16 16 C 0.03 1.28 4.03 86.30 0.35 1.63 16 17 N -0.54 -24.15 4.69 -901.47 -4.23 -28.38 16 18 C 0.04 1.58 8.70 127.69 1.11 2.70 16 19 C 0.22 11.25 2.34 44.17 0.10 11.36 16 20 H 0.01 0.44 8.03 -2.38 -0.02 0.42 16 21 C -0.16 -7.84 8.28 71.98 0.60 -7.24 16 22 C -0.51 -29.19 7.94 25.60 0.20 -28.99 16 23 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 24 C 0.01 0.64 5.30 84.66 0.45 1.09 16 25 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 26 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 29 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 30 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 31 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 33 H 0.16 1.57 6.29 -2.91 -0.02 1.55 16 34 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 35 H 0.16 1.57 6.29 -2.91 -0.02 1.55 16 36 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 37 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.38 11.51 9.05 -74.06 -0.67 10.84 16 42 H 0.07 2.62 8.00 -2.38 -0.02 2.60 16 43 H 0.04 1.43 6.94 -2.39 -0.02 1.41 16 44 H 0.06 2.54 6.53 -2.39 -0.02 2.52 16 45 H 0.06 2.43 6.21 -2.39 -0.01 2.41 16 46 H 0.02 0.82 6.28 -2.39 -0.01 0.80 16 47 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 48 H 0.03 1.56 6.39 -2.39 -0.02 1.54 16 49 H 0.03 1.17 6.75 -2.39 -0.02 1.15 16 50 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -74.75 398.06 0.74 -74.02 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.29 Total: 23.81 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 6.60 Total: -11.26 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.99 Total: -81.79 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -4.20 Total: -51.65 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -74.75 0.74 -74.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345875013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.965 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds