Wall clock time and date at job start Tue Mar 31 2020 22:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35994 * 117.00080 * 2 1 4 4 C 1.38669 * 120.04530 * 0.25686 * 3 2 1 5 5 C 1.38233 * 120.09070 * 180.24981 * 4 3 2 6 6 C 1.38225 * 120.17808 * 359.74704 * 5 4 3 7 7 C 1.38674 * 120.08828 * 359.97438 * 6 5 4 8 8 O 1.35999 * 120.04305 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99987 * 359.97294 * 8 7 6 10 10 C 1.38971 * 120.04567 * 179.97438 * 3 2 1 11 11 O 1.36091 * 120.08874 * 0.02562 * 10 3 2 12 12 C 1.42898 * 117.00210 * 269.72123 * 11 10 3 13 13 C 1.52997 * 109.47319 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.47346 * 305.00335 * 13 12 11 15 15 O 1.42904 * 109.47396 * 64.99884 * 13 12 11 16 16 C 1.52997 * 109.47504 * 185.00258 * 13 12 11 17 17 N 1.46898 * 109.47377 * 180.02562 * 16 13 12 18 18 C 1.46902 * 110.99873 * 293.95119 * 17 16 13 19 19 C 1.46899 * 111.00013 * 170.00207 * 17 16 13 20 20 H 1.08998 * 109.47699 * 59.99517 * 19 17 16 21 21 C 1.53003 * 109.47148 * 299.99595 * 19 17 16 22 22 C 1.50700 * 109.47316 * 179.97438 * 19 17 16 23 23 H 1.08007 * 119.99668 * 359.97438 * 22 19 17 24 24 C 1.37876 * 120.00616 * 179.97438 * 22 19 17 25 25 N 1.31513 * 119.99583 * 359.97438 * 24 22 19 26 26 Si 1.86796 * 120.00466 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.46905 * 89.99862 * 26 24 22 28 28 H 1.48499 * 109.47399 * 209.99921 * 26 24 22 29 29 H 1.48495 * 109.47140 * 330.00107 * 26 24 22 30 30 H 1.08997 * 109.47396 * 60.00046 * 1 2 3 31 31 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47089 * 299.99883 * 1 2 3 33 33 H 1.08002 * 119.95578 * 359.97280 * 4 3 2 34 34 H 1.07994 * 119.91168 * 179.76606 * 5 4 3 35 35 H 1.07999 * 119.96116 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.47339 * 300.00033 * 9 8 7 37 37 H 1.08996 * 109.46654 * 60.00343 * 9 8 7 38 38 H 1.08999 * 109.46668 * 179.97438 * 9 8 7 39 39 H 1.09002 * 109.47259 * 300.00216 * 12 11 10 40 40 H 1.09001 * 109.47074 * 60.00238 * 12 11 10 41 41 H 0.96708 * 113.99258 * 60.00195 * 15 13 12 42 42 H 1.09004 * 109.46881 * 300.00361 * 16 13 12 43 43 H 1.09002 * 109.47016 * 59.99741 * 16 13 12 44 44 H 1.08996 * 109.46941 * 60.00026 * 18 17 16 45 45 H 1.09003 * 109.47283 * 179.97438 * 18 17 16 46 46 H 1.09003 * 109.47280 * 300.00254 * 18 17 16 47 47 H 1.09001 * 109.47261 * 300.00483 * 21 19 17 48 48 H 1.08999 * 109.47158 * 60.00007 * 21 19 17 49 49 H 1.08991 * 109.47548 * 180.02562 * 21 19 17 50 50 H 0.96998 * 120.00758 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3753 0.0054 5 6 1.9187 3.6074 0.0002 6 6 3.2988 3.6852 -0.0051 7 6 4.0604 2.5263 -0.0047 8 8 5.4182 2.6038 -0.0094 9 6 5.9932 3.9120 -0.0153 10 6 3.4342 1.2855 0.0005 11 8 4.1781 0.1459 0.0005 12 6 4.5374 -0.3943 1.2737 13 6 5.3652 -1.6653 1.0733 14 1 4.8123 -2.3638 0.4451 15 8 6.6028 -1.3330 0.4407 16 6 5.6442 -2.3119 2.4316 17 7 6.4395 -3.5318 2.2391 18 6 5.6696 -4.5537 1.5173 19 6 6.9273 -4.0504 3.5240 20 1 6.0790 -4.2840 4.1673 21 6 7.8044 -2.9947 4.2002 22 6 7.7365 -5.2995 3.2871 23 1 7.8741 -5.6712 2.2824 24 6 8.3010 -5.9678 4.3527 25 7 8.1338 -5.5149 5.5760 26 14 9.3034 -7.5165 4.0591 27 1 10.7281 -7.1522 3.8529 28 1 9.1870 -8.4124 5.2376 29 1 8.7918 -8.2159 2.8532 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2136 2.3188 0.0091 34 1 1.3284 4.5118 0.0006 35 1 3.7847 4.6497 -0.0096 36 1 5.6662 4.4487 -0.9057 37 1 5.6720 4.4540 0.8742 38 1 7.0802 3.8310 -0.0181 39 1 5.1246 0.3387 1.8269 40 1 3.6341 -0.6342 1.8347 41 1 7.1483 -0.7137 0.9449 42 1 6.1971 -1.6134 3.0597 43 1 4.7002 -2.5654 2.9140 44 1 5.3800 -4.1675 0.5400 45 1 6.2820 -5.4461 1.3879 46 1 4.7756 -4.8056 2.0878 47 1 8.6528 -2.7609 3.5569 48 1 7.2189 -2.0914 4.3716 49 1 8.1668 -3.3795 5.1533 50 1 8.5312 -5.9847 6.3258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345875014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:47 Heat of formation + Delta-G solvation = -115.751026 kcal Electronic energy + Delta-G solvation = -30377.408803 eV Core-core repulsion = 26179.020020 eV Total energy + Delta-G solvation = -4198.388783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95289 -39.22857 -38.49378 -37.29239 -36.50318 -35.48842 -32.69815 -30.91554 -29.88120 -29.75486 -28.89040 -28.08987 -26.98729 -26.36432 -24.54169 -23.52408 -22.50102 -22.15088 -21.03942 -19.42224 -18.99577 -17.49994 -17.29821 -16.71940 -16.56209 -16.27149 -15.88781 -15.76230 -15.72115 -15.10376 -15.04462 -14.99576 -14.28300 -14.18830 -13.65303 -13.57278 -13.38556 -13.03405 -12.87677 -12.58467 -12.44201 -12.26513 -12.24766 -11.84776 -11.79091 -11.63148 -11.34479 -11.04386 -11.02431 -10.97705 -10.85538 -10.64683 -10.20266 -10.10323 -9.96597 -9.90650 -9.82588 -9.40734 -8.81265 -8.46219 -8.43155 -8.37577 -7.06629 -5.97265 -4.00990 0.92299 1.08105 2.59599 3.18360 3.34681 3.40038 3.40569 3.44621 3.72070 4.44318 4.48082 4.65114 4.70072 4.74594 4.82767 4.86353 4.88943 4.91004 4.97333 5.03384 5.20986 5.23649 5.27216 5.27659 5.34379 5.45119 5.63969 5.66326 5.79488 5.80344 5.90985 6.07526 6.08249 6.17044 6.31380 6.44928 6.50963 6.85491 6.88937 6.89297 7.02904 7.08280 7.20250 7.55401 7.64578 7.76879 7.87835 8.18828 8.27876 8.37458 8.65965 9.06037 9.63796 11.09775 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.002407 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.020921 B =11630.855754 C =12554.420277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.147 3.853 4 C -0.237 4.237 5 C -0.048 4.048 6 C -0.237 4.237 7 C 0.149 3.851 8 O -0.297 6.297 9 C 0.025 3.975 10 C 0.032 3.968 11 O -0.299 6.299 12 C 0.037 3.963 13 C 0.120 3.880 14 H 0.101 0.899 15 O -0.536 6.536 16 C 0.024 3.976 17 N -0.524 5.524 18 C 0.035 3.965 19 C 0.211 3.789 20 H -0.004 1.004 21 C -0.133 4.133 22 C -0.500 4.500 23 H 0.064 0.936 24 C 0.057 3.943 25 N -0.896 5.896 26 Si 0.897 3.103 27 H -0.281 1.281 28 H -0.288 1.288 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.368 0.632 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.046 0.954 45 H 0.078 0.922 46 H 0.008 0.992 47 H 0.036 0.964 48 H 0.006 0.994 49 H 0.085 0.915 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 21.414 -9.779 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.212 6.212 3 C 0.101 3.899 4 C -0.256 4.256 5 C -0.066 4.066 6 C -0.256 4.256 7 C 0.102 3.898 8 O -0.209 6.209 9 C -0.070 4.070 10 C -0.013 4.013 11 O -0.215 6.215 12 C -0.038 4.038 13 C 0.059 3.941 14 H 0.119 0.881 15 O -0.340 6.340 16 C -0.106 4.106 17 N -0.248 5.248 18 C -0.113 4.113 19 C 0.105 3.895 20 H 0.014 0.986 21 C -0.191 4.191 22 C -0.539 4.539 23 H 0.083 0.917 24 C -0.143 4.143 25 N -0.535 5.535 26 Si 0.725 3.275 27 H -0.207 1.207 28 H -0.214 1.214 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.214 0.786 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.026 0.974 47 H 0.055 0.945 48 H 0.025 0.975 49 H 0.103 0.897 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.223 20.594 -10.473 27.131 hybrid contribution -0.469 -0.031 1.187 1.277 sum -14.692 20.564 -9.286 26.925 Atomic orbital electron populations 1.23134 0.78189 1.04327 1.01302 1.86210 1.21337 1.25809 1.87890 1.19081 0.90793 0.85096 0.94977 1.21074 1.00176 0.91719 1.12623 1.20703 0.93650 0.97132 0.95098 1.21084 0.94743 0.97188 1.12573 1.19084 0.83237 0.92684 0.94771 1.86233 1.16400 1.30517 1.87775 1.23137 0.99612 0.82992 1.01229 1.17093 0.86565 0.85345 1.12322 1.86257 1.69510 1.37147 1.28604 1.23592 0.98953 0.96537 0.84757 1.21873 0.84754 0.92470 0.94955 0.88076 1.86613 1.30815 1.67596 1.48926 1.22692 0.96791 0.95824 0.95253 1.62007 1.35412 1.03519 1.23891 1.22269 0.95895 0.96682 0.96500 1.19261 0.93439 0.93199 0.83558 0.98638 1.21856 0.98886 0.95542 1.02783 1.21176 1.31437 1.07843 0.93417 0.91741 1.24934 0.96515 0.97796 0.95090 1.69892 1.45422 1.39875 0.98327 0.86507 0.80544 0.82862 0.77552 1.20664 1.21421 1.19913 0.92503 0.87891 0.92557 0.84908 0.85227 0.84883 0.92555 0.92611 0.87812 0.92856 0.92594 0.78607 0.90407 0.95386 0.93500 0.90366 0.97385 0.94522 0.97525 0.89677 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.70 10.28 -34.31 -0.35 -4.06 16 3 C 0.15 1.83 6.70 -39.15 -0.26 1.56 16 4 C -0.24 -2.20 9.04 -39.42 -0.36 -2.56 16 5 C -0.05 -0.39 10.04 -39.59 -0.40 -0.79 16 6 C -0.24 -2.21 9.04 -39.43 -0.36 -2.56 16 7 C 0.15 1.85 6.70 -39.15 -0.26 1.59 16 8 O -0.30 -3.66 10.28 -34.32 -0.35 -4.01 16 9 C 0.03 0.19 9.81 101.05 0.99 1.18 16 10 C 0.03 0.46 5.75 -39.03 -0.22 0.24 16 11 O -0.30 -4.94 9.59 -48.21 -0.46 -5.40 16 12 C 0.04 0.56 5.70 37.16 0.21 0.78 16 13 C 0.12 2.04 3.12 -26.73 -0.08 1.96 16 14 H 0.10 1.82 6.55 -51.93 -0.34 1.48 16 15 O -0.54 -9.76 13.17 -40.08 -0.53 -10.28 16 16 C 0.02 0.44 4.44 -3.83 -0.02 0.43 16 17 N -0.52 -11.76 4.49 -236.28 -1.06 -12.82 16 18 C 0.03 0.74 9.04 60.07 0.54 1.28 16 19 C 0.21 5.46 2.06 -68.86 -0.14 5.32 16 20 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 21 C -0.13 -3.28 8.77 37.16 0.33 -2.95 16 22 C -0.50 -13.99 7.88 -34.44 -0.27 -14.27 16 23 H 0.06 1.81 6.40 -52.48 -0.34 1.48 16 24 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 25 N -0.90 -25.85 11.32 55.43 0.63 -25.22 16 26 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 29 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 33 H 0.13 0.89 6.29 -52.49 -0.33 0.56 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.89 6.29 -52.49 -0.33 0.56 16 36 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 37 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.37 5.62 9.05 45.56 0.41 6.03 16 42 H 0.08 1.43 5.83 -51.93 -0.30 1.13 16 43 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 44 H 0.05 0.89 6.47 -51.93 -0.34 0.55 16 45 H 0.08 1.75 6.10 -51.93 -0.32 1.43 16 46 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.01 0.13 6.20 -51.93 -0.32 -0.19 16 49 H 0.08 2.30 6.07 -51.93 -0.32 1.98 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -33.96 400.54 -7.56 -41.52 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.05 Total: 3.66 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 0.60 Total: -6.11 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.43 Total: -38.04 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.70 Total: -23.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.96 -7.56 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345875014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.231 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds