Wall clock time and date at job start Tue Mar 31 2020 23:16:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 S 1.81408 * 109.47085 * 2 1
4 4 C 1.81398 * 102.99672 * 179.97438 * 3 2 1
5 5 H 1.08991 * 110.01813 * 53.61136 * 4 3 2
6 6 C 1.54267 * 110.03370 * 292.16298 * 4 3 2
7 7 C 1.54881 * 104.19758 * 217.10979 * 6 4 3
8 8 C 1.54891 * 102.75143 * 37.94367 * 7 6 4
9 9 C 1.53875 * 110.02799 * 175.00003 * 4 3 2
10 10 H 1.09003 * 110.03247 * 238.61348 * 9 4 3
11 11 N 1.46898 * 110.03623 * 0.02562 * 9 4 3
12 12 C 1.46904 * 111.00201 * 205.00167 * 11 9 4
13 13 C 1.50697 * 109.46892 * 179.97438 * 12 11 9
14 14 O 1.21283 * 120.00521 * 359.72736 * 13 12 11
15 15 N 1.34784 * 119.99774 * 179.97438 * 13 12 11
16 16 C 1.46499 * 119.99893 * 179.72962 * 15 13 12
17 17 C 1.50697 * 109.47293 * 90.00297 * 16 15 13
18 18 H 1.07997 * 120.00010 * 359.97438 * 17 16 15
19 19 C 1.37875 * 120.00091 * 180.02562 * 17 16 15
20 20 N 1.31517 * 120.00149 * 359.97438 * 19 17 16
21 21 Si 1.86797 * 120.00247 * 179.97438 * 19 17 16
22 22 H 1.48498 * 109.47151 * 359.97438 * 21 19 17
23 23 H 1.48493 * 109.47614 * 119.99582 * 21 19 17
24 24 H 1.48497 * 109.46911 * 239.99550 * 21 19 17
25 25 C 1.46499 * 119.99971 * 359.72768 * 15 13 12
26 26 C 1.52999 * 109.47276 * 89.99654 * 25 15 13
27 27 C 1.47198 * 109.47424 * 179.97438 * 26 25 15
28 28 N 8.96114 * 147.08285 * 108.44628 * 3 1 2
29 29 H 1.08995 * 109.47483 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47460 * 300.00724 * 1 2 3
31 31 H 1.09002 * 109.47029 * 60.00293 * 1 2 3
32 32 H 1.08994 * 109.47575 * 239.99820 * 2 1 3
33 33 H 1.08999 * 109.46569 * 119.99494 * 2 1 3
34 34 H 1.09008 * 110.48335 * 335.78827 * 6 4 3
35 35 H 1.08991 * 110.48522 * 98.29452 * 6 4 3
36 36 H 1.08998 * 110.75786 * 156.25492 * 7 6 4
37 37 H 1.09002 * 110.75774 * 279.63093 * 7 6 4
38 38 H 1.09000 * 110.49200 * 203.37996 * 8 7 6
39 39 H 1.08997 * 110.48722 * 80.73648 * 8 7 6
40 40 H 1.00898 * 111.00447 * 81.04371 * 11 9 4
41 41 H 1.09001 * 109.46900 * 60.00109 * 12 11 9
42 42 H 1.08993 * 109.47169 * 299.99830 * 12 11 9
43 43 H 1.08997 * 109.46865 * 210.00034 * 16 15 13
44 44 H 1.08998 * 109.47058 * 329.99547 * 16 15 13
45 45 H 0.96995 * 120.00744 * 180.02562 * 20 19 17
46 46 H 1.08998 * 109.47416 * 209.99869 * 25 15 13
47 47 H 1.09008 * 109.47058 * 330.00468 * 25 15 13
48 48 H 1.08998 * 109.47074 * 300.00425 * 26 25 15
49 49 H 1.09007 * 109.46853 * 59.99785 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7103 0.0000
4 6 3.9371 1.5058 0.0008
5 1 4.2396 0.8599 -0.8234
6 6 4.4000 0.9032 1.3433
7 6 5.7438 1.6153 1.6361
8 6 5.4790 3.0603 1.1453
9 6 4.6232 2.8774 -0.1251
10 1 5.2588 2.8970 -1.0104
11 7 3.6123 3.9401 -0.2075
12 6 4.1461 5.1221 -0.8973
13 6 3.0830 6.1882 -0.9629
14 8 1.9868 5.9816 -0.4868
15 7 3.3487 7.3694 -1.5552
16 6 2.3134 8.4035 -1.6242
17 6 2.3995 9.2829 -0.4035
18 1 3.1501 9.0905 0.3488
19 6 1.5193 10.3325 -0.2465
20 7 0.6049 10.5665 -1.1623
21 14 1.6256 11.4221 1.2670
22 1 2.7313 10.9513 2.1393
23 1 1.8854 12.8237 0.8508
24 1 0.3441 11.3573 2.0145
25 6 4.6730 7.6191 -2.1298
26 6 4.6862 7.1732 -3.5933
27 6 6.0166 7.4247 -4.1709
28 7 7.0418 7.6164 -4.6195
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8898
31 1 -0.3633 0.5138 -0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.8932 -0.5138 0.8901
34 1 3.6750 1.1186 2.1283
35 1 4.5488 -0.1723 1.2476
36 1 5.9623 1.6041 2.7039
37 1 6.5550 1.1576 1.0699
38 1 6.4176 3.5595 0.9043
39 1 4.9285 3.6241 1.8983
40 1 3.2662 4.1818 0.7089
41 1 4.4477 4.8476 -1.9081
42 1 5.0093 5.5025 -0.3512
43 1 2.4628 9.0081 -2.5188
44 1 1.3313 7.9323 -1.6642
45 1 -0.0141 11.3051 -1.0521
46 1 4.8991 8.6838 -2.0724
47 1 5.4228 7.0577 -1.5723
48 1 4.4601 6.1085 -3.6508
49 1 3.9364 7.7345 -4.1510
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000348470614.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:16:39
Heat of formation + Delta-G solvation = -15.716282 kcal
Electronic energy + Delta-G solvation = -27372.245934 eV
Core-core repulsion = 23653.240604 eV
Total energy + Delta-G solvation = -3719.005329 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.172 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-39.48896 -38.50182 -36.84324 -35.22965 -34.18241 -32.85346 -32.70924 -30.80455
-29.14084 -28.83516 -27.10873 -24.98793 -23.96120 -23.52698 -22.34052 -21.11316
-20.37753 -18.55784 -17.59585 -16.85730 -16.59648 -16.39596 -15.99489 -15.48853
-15.32302 -15.03232 -14.80977 -14.66214 -14.36422 -14.09229 -13.82522 -13.79442
-13.27246 -13.14377 -12.93923 -12.58504 -12.43034 -12.39970 -12.26697 -12.06727
-11.86186 -11.68292 -11.58907 -11.47955 -11.37066 -11.25555 -11.23682 -10.98601
-10.95820 -10.83095 -10.77397 -10.60899 -10.17267 -9.66356 -9.49685 -8.96333
-8.45507 -8.25849 -7.78789 -7.34431 -6.06670 -4.11161 1.76281 2.74242
2.76622 2.82085 3.29035 3.35566 3.38127 3.42069 3.59329 4.06075
4.22363 4.28973 4.41154 4.48978 4.76760 4.86059 4.96107 4.98779
5.06689 5.10686 5.12041 5.16267 5.20063 5.28307 5.29096 5.32026
5.36386 5.39426 5.46767 5.56607 5.62321 5.63079 5.70785 5.74226
5.75151 5.84842 5.88703 6.02716 6.03705 6.09125 6.82137 7.06801
7.38807 7.43518 7.47970 7.58064 7.89753 8.20220 8.32088 8.88250
9.05842 9.54411 11.01426
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.008810 B = 0.003205 C = 0.002746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3177.299424 B = 8733.272399 C =10193.841049
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.126 4.126
3 S -0.161 6.161
4 C -0.067 4.067
5 H 0.084 0.916
6 C -0.122 4.122
7 C -0.118 4.118
8 C -0.155 4.155
9 C 0.105 3.895
10 H 0.088 0.912
11 N -0.655 5.655
12 C 0.039 3.961
13 C 0.506 3.494
14 O -0.513 6.513
15 N -0.600 5.600
16 C 0.246 3.754
17 C -0.527 4.527
18 H 0.057 0.943
19 C 0.062 3.938
20 N -0.893 5.893
21 Si 0.896 3.104
22 H -0.274 1.274
23 H -0.284 1.284
24 H -0.283 1.283
25 C 0.119 3.881
26 C -0.051 4.051
27 C 0.218 3.782
28 N -0.447 5.447
29 H 0.061 0.939
30 H 0.063 0.937
31 H 0.064 0.936
32 H 0.070 0.930
33 H 0.069 0.931
34 H 0.080 0.920
35 H 0.064 0.936
36 H 0.068 0.932
37 H 0.067 0.933
38 H 0.069 0.931
39 H 0.073 0.927
40 H 0.358 0.642
41 H 0.094 0.906
42 H 0.054 0.946
43 H 0.034 0.966
44 H 0.047 0.953
45 H 0.263 0.737
46 H 0.093 0.907
47 H 0.073 0.927
48 H 0.107 0.893
49 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.654 -20.314 1.503 22.132
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.275 4.275
3 S 0.067 5.933
4 C -0.197 4.197
5 H 0.103 0.897
6 C -0.162 4.162
7 C -0.157 4.157
8 C -0.194 4.194
9 C -0.006 4.006
10 H 0.106 0.894
11 N -0.288 5.288
12 C -0.093 4.093
13 C 0.291 3.709
14 O -0.387 6.387
15 N -0.333 5.333
16 C 0.127 3.873
17 C -0.566 4.566
18 H 0.076 0.924
19 C -0.140 4.140
20 N -0.532 5.532
21 Si 0.724 3.276
22 H -0.199 1.199
23 H -0.210 1.210
24 H -0.209 1.209
25 C -0.008 4.008
26 C -0.093 4.093
27 C -0.100 4.100
28 N -0.125 5.125
29 H 0.080 0.920
30 H 0.082 0.918
31 H 0.083 0.917
32 H 0.089 0.911
33 H 0.088 0.912
34 H 0.099 0.901
35 H 0.083 0.917
36 H 0.087 0.913
37 H 0.086 0.914
38 H 0.088 0.912
39 H 0.092 0.908
40 H 0.180 0.820
41 H 0.112 0.888
42 H 0.072 0.928
43 H 0.052 0.948
44 H 0.065 0.935
45 H 0.073 0.927
46 H 0.111 0.889
47 H 0.091 0.909
48 H 0.125 0.875
49 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 8.467 -19.301 0.456 21.082
hybrid contribution 1.069 -0.179 1.523 1.869
sum 9.536 -19.480 1.978 21.779
Atomic orbital electron populations
1.21431 0.92624 1.01784 1.03319 1.23500 1.00334 0.99987 1.03692
1.88018 1.01797 1.05923 1.97600 1.23950 0.96132 0.99480 1.00099
0.89716 1.22833 0.97752 0.99295 0.96273 1.22393 0.96974 0.95235
1.01104 1.23175 1.00602 0.97568 0.98080 1.21992 0.91115 0.89754
0.97773 0.89418 1.60012 1.33901 1.07932 1.26914 1.21968 0.95917
0.90853 1.00548 1.20201 0.88915 0.82472 0.79281 1.90721 1.23879
1.79006 1.45119 1.48209 1.13187 1.15710 1.56181 1.19322 0.86487
0.84400 0.97084 1.21450 1.16562 1.12406 1.06171 0.92440 1.24912
0.95025 0.97515 0.96529 1.69927 1.18730 1.30396 1.34131 0.86479
0.78058 0.80095 0.82994 1.19870 1.21031 1.20886 1.21274 0.86379
1.03291 0.89822 1.19930 0.86634 1.04699 0.98039 1.29116 0.94736
0.92874 0.93285 1.81177 1.12447 1.09344 1.09510 0.91967 0.91803
0.91657 0.91088 0.91193 0.90147 0.91729 0.91301 0.91442 0.91225
0.90805 0.82023 0.88823 0.92833 0.94848 0.93509 0.92749 0.88875
0.90900 0.87515 0.86462
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.22 9.92 37.16 0.37 -0.86 16
2 C -0.13 -1.20 6.55 37.16 0.24 -0.96 16
3 S -0.16 -1.97 19.26 -107.50 -2.07 -4.04 16
4 C -0.07 -0.64 3.42 -25.61 -0.09 -0.72 16
5 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
6 C -0.12 -0.98 6.26 -25.08 -0.16 -1.13 16
7 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16
8 C -0.15 -1.31 6.45 -25.07 -0.16 -1.47 16
9 C 0.11 1.02 3.22 -66.59 -0.21 0.81 16
10 H 0.09 0.77 7.81 -51.93 -0.41 0.37 16
11 N -0.65 -8.46 4.03 -106.81 -0.43 -8.89 16
12 C 0.04 0.50 4.55 -4.98 -0.02 0.48 16
13 C 0.51 9.22 7.71 -10.98 -0.08 9.14 16
14 O -0.51 -11.94 15.79 5.56 0.09 -11.86 16
15 N -0.60 -10.85 2.46 -175.06 -0.43 -11.28 16
16 C 0.25 5.83 5.16 -5.20 -0.03 5.80 16
17 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16
18 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16
19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16
20 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16
21 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16
22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
25 C 0.12 1.56 5.17 -4.04 -0.02 1.54 16
26 C -0.05 -0.54 6.03 -29.52 -0.18 -0.71 16
27 C 0.22 2.61 15.43 -20.78 -0.32 2.29 16
28 N -0.45 -6.52 18.53 42.13 0.78 -5.74 16
29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16
34 H 0.08 0.72 7.81 -51.92 -0.41 0.32 16
35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
39 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16
40 H 0.36 5.22 7.70 -39.29 -0.30 4.92 16
41 H 0.09 0.99 7.10 -51.93 -0.37 0.62 16
42 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16
43 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16
44 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16
45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
46 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16
47 H 0.07 0.78 6.44 -51.92 -0.33 0.45 16
48 H 0.11 0.92 7.20 -51.93 -0.37 0.54 16
49 H 0.12 1.23 8.14 -51.92 -0.42 0.81 16
LS Contribution 414.09 15.07 6.24 6.24
Total: -1.00 -32.59 414.09 -9.75 -42.34
By element:
Atomic # 1 Polarization: 9.81 SS G_CDS: -8.39 Total: 1.43 kcal
Atomic # 6 Polarization: 1.66 SS G_CDS: -1.25 Total: 0.41 kcal
Atomic # 7 Polarization: -51.41 SS G_CDS: 0.66 Total: -50.76 kcal
Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.86 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Atomic # 16 Polarization: -1.97 SS G_CDS: -2.07 Total: -4.04 kcal
Total LS contribution 6.24 Total: 6.24 kcal
Total: -32.59 -9.75 -42.34 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348470614.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.626 kcal
(2) G-P(sol) polarization free energy of solvation -32.595 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.969 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.716 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds