Wall clock time and date at job start Tue Mar 31 2020 23:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81408 * 109.47085 * 2 1 4 4 C 1.81398 * 102.99672 * 179.97438 * 3 2 1 5 5 H 1.08991 * 110.01813 * 53.61136 * 4 3 2 6 6 C 1.54267 * 110.03370 * 292.16298 * 4 3 2 7 7 C 1.54881 * 104.19758 * 217.10979 * 6 4 3 8 8 C 1.54891 * 102.75143 * 37.94367 * 7 6 4 9 9 C 1.53875 * 110.02799 * 175.00003 * 4 3 2 10 10 H 1.09003 * 110.03247 * 238.61348 * 9 4 3 11 11 N 1.46898 * 110.03623 * 0.02562 * 9 4 3 12 12 C 1.46904 * 111.00201 * 205.00167 * 11 9 4 13 13 C 1.50697 * 109.46892 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00521 * 359.72736 * 13 12 11 15 15 N 1.34784 * 119.99774 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99893 * 179.72962 * 15 13 12 17 17 C 1.50697 * 109.47293 * 90.00297 * 16 15 13 18 18 H 1.07997 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00091 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00149 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00247 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47614 * 119.99582 * 21 19 17 24 24 H 1.48497 * 109.46911 * 239.99550 * 21 19 17 25 25 C 1.46499 * 119.99971 * 359.72768 * 15 13 12 26 26 C 1.52999 * 109.47276 * 89.99654 * 25 15 13 27 27 C 1.47198 * 109.47424 * 179.97438 * 26 25 15 28 28 N 8.96114 * 147.08285 * 108.44628 * 3 1 2 29 29 H 1.08995 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47460 * 300.00724 * 1 2 3 31 31 H 1.09002 * 109.47029 * 60.00293 * 1 2 3 32 32 H 1.08994 * 109.47575 * 239.99820 * 2 1 3 33 33 H 1.08999 * 109.46569 * 119.99494 * 2 1 3 34 34 H 1.09008 * 110.48335 * 335.78827 * 6 4 3 35 35 H 1.08991 * 110.48522 * 98.29452 * 6 4 3 36 36 H 1.08998 * 110.75786 * 156.25492 * 7 6 4 37 37 H 1.09002 * 110.75774 * 279.63093 * 7 6 4 38 38 H 1.09000 * 110.49200 * 203.37996 * 8 7 6 39 39 H 1.08997 * 110.48722 * 80.73648 * 8 7 6 40 40 H 1.00898 * 111.00447 * 81.04371 * 11 9 4 41 41 H 1.09001 * 109.46900 * 60.00109 * 12 11 9 42 42 H 1.08993 * 109.47169 * 299.99830 * 12 11 9 43 43 H 1.08997 * 109.46865 * 210.00034 * 16 15 13 44 44 H 1.08998 * 109.47058 * 329.99547 * 16 15 13 45 45 H 0.96995 * 120.00744 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.47416 * 209.99869 * 25 15 13 47 47 H 1.09008 * 109.47058 * 330.00468 * 25 15 13 48 48 H 1.08998 * 109.47074 * 300.00425 * 26 25 15 49 49 H 1.09007 * 109.46853 * 59.99785 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2396 0.8599 -0.8234 6 6 4.4000 0.9032 1.3433 7 6 5.7438 1.6153 1.6361 8 6 5.4790 3.0603 1.1453 9 6 4.6232 2.8774 -0.1251 10 1 5.2588 2.8970 -1.0104 11 7 3.6123 3.9401 -0.2075 12 6 4.1461 5.1221 -0.8973 13 6 3.0830 6.1882 -0.9629 14 8 1.9868 5.9816 -0.4868 15 7 3.3487 7.3694 -1.5552 16 6 2.3134 8.4035 -1.6242 17 6 2.3995 9.2829 -0.4035 18 1 3.1501 9.0905 0.3488 19 6 1.5193 10.3325 -0.2465 20 7 0.6049 10.5665 -1.1623 21 14 1.6256 11.4221 1.2670 22 1 2.7313 10.9513 2.1393 23 1 1.8854 12.8237 0.8508 24 1 0.3441 11.3573 2.0145 25 6 4.6730 7.6191 -2.1298 26 6 4.6862 7.1732 -3.5933 27 6 6.0166 7.4247 -4.1709 28 7 7.0418 7.6164 -4.6195 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.6750 1.1186 2.1283 35 1 4.5488 -0.1723 1.2476 36 1 5.9623 1.6041 2.7039 37 1 6.5550 1.1576 1.0699 38 1 6.4176 3.5595 0.9043 39 1 4.9285 3.6241 1.8983 40 1 3.2662 4.1818 0.7089 41 1 4.4477 4.8476 -1.9081 42 1 5.0093 5.5025 -0.3512 43 1 2.4628 9.0081 -2.5188 44 1 1.3313 7.9323 -1.6642 45 1 -0.0141 11.3051 -1.0521 46 1 4.8991 8.6838 -2.0724 47 1 5.4228 7.0577 -1.5723 48 1 4.4601 6.1085 -3.6508 49 1 3.9364 7.7345 -4.1510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348470614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:39 Heat of formation + Delta-G solvation = -15.716282 kcal Electronic energy + Delta-G solvation = -27372.245934 eV Core-core repulsion = 23653.240604 eV Total energy + Delta-G solvation = -3719.005329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.48896 -38.50182 -36.84324 -35.22965 -34.18241 -32.85346 -32.70924 -30.80455 -29.14084 -28.83516 -27.10873 -24.98793 -23.96120 -23.52698 -22.34052 -21.11316 -20.37753 -18.55784 -17.59585 -16.85730 -16.59648 -16.39596 -15.99489 -15.48853 -15.32302 -15.03232 -14.80977 -14.66214 -14.36422 -14.09229 -13.82522 -13.79442 -13.27246 -13.14377 -12.93923 -12.58504 -12.43034 -12.39970 -12.26697 -12.06727 -11.86186 -11.68292 -11.58907 -11.47955 -11.37066 -11.25555 -11.23682 -10.98601 -10.95820 -10.83095 -10.77397 -10.60899 -10.17267 -9.66356 -9.49685 -8.96333 -8.45507 -8.25849 -7.78789 -7.34431 -6.06670 -4.11161 1.76281 2.74242 2.76622 2.82085 3.29035 3.35566 3.38127 3.42069 3.59329 4.06075 4.22363 4.28973 4.41154 4.48978 4.76760 4.86059 4.96107 4.98779 5.06689 5.10686 5.12041 5.16267 5.20063 5.28307 5.29096 5.32026 5.36386 5.39426 5.46767 5.56607 5.62321 5.63079 5.70785 5.74226 5.75151 5.84842 5.88703 6.02716 6.03705 6.09125 6.82137 7.06801 7.38807 7.43518 7.47970 7.58064 7.89753 8.20220 8.32088 8.88250 9.05842 9.54411 11.01426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.003205 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.299424 B = 8733.272399 C =10193.841049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 S -0.161 6.161 4 C -0.067 4.067 5 H 0.084 0.916 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.155 4.155 9 C 0.105 3.895 10 H 0.088 0.912 11 N -0.655 5.655 12 C 0.039 3.961 13 C 0.506 3.494 14 O -0.513 6.513 15 N -0.600 5.600 16 C 0.246 3.754 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.896 3.104 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.119 3.881 26 C -0.051 4.051 27 C 0.218 3.782 28 N -0.447 5.447 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.358 0.642 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.034 0.966 44 H 0.047 0.953 45 H 0.263 0.737 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.107 0.893 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.654 -20.314 1.503 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.275 4.275 3 S 0.067 5.933 4 C -0.197 4.197 5 H 0.103 0.897 6 C -0.162 4.162 7 C -0.157 4.157 8 C -0.194 4.194 9 C -0.006 4.006 10 H 0.106 0.894 11 N -0.288 5.288 12 C -0.093 4.093 13 C 0.291 3.709 14 O -0.387 6.387 15 N -0.333 5.333 16 C 0.127 3.873 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.724 3.276 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.008 4.008 26 C -0.093 4.093 27 C -0.100 4.100 28 N -0.125 5.125 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.180 0.820 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.091 0.909 48 H 0.125 0.875 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.467 -19.301 0.456 21.082 hybrid contribution 1.069 -0.179 1.523 1.869 sum 9.536 -19.480 1.978 21.779 Atomic orbital electron populations 1.21431 0.92624 1.01784 1.03319 1.23500 1.00334 0.99987 1.03692 1.88018 1.01797 1.05923 1.97600 1.23950 0.96132 0.99480 1.00099 0.89716 1.22833 0.97752 0.99295 0.96273 1.22393 0.96974 0.95235 1.01104 1.23175 1.00602 0.97568 0.98080 1.21992 0.91115 0.89754 0.97773 0.89418 1.60012 1.33901 1.07932 1.26914 1.21968 0.95917 0.90853 1.00548 1.20201 0.88915 0.82472 0.79281 1.90721 1.23879 1.79006 1.45119 1.48209 1.13187 1.15710 1.56181 1.19322 0.86487 0.84400 0.97084 1.21450 1.16562 1.12406 1.06171 0.92440 1.24912 0.95025 0.97515 0.96529 1.69927 1.18730 1.30396 1.34131 0.86479 0.78058 0.80095 0.82994 1.19870 1.21031 1.20886 1.21274 0.86379 1.03291 0.89822 1.19930 0.86634 1.04699 0.98039 1.29116 0.94736 0.92874 0.93285 1.81177 1.12447 1.09344 1.09510 0.91967 0.91803 0.91657 0.91088 0.91193 0.90147 0.91729 0.91301 0.91442 0.91225 0.90805 0.82023 0.88823 0.92833 0.94848 0.93509 0.92749 0.88875 0.90900 0.87515 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.92 37.16 0.37 -0.86 16 2 C -0.13 -1.20 6.55 37.16 0.24 -0.96 16 3 S -0.16 -1.97 19.26 -107.50 -2.07 -4.04 16 4 C -0.07 -0.64 3.42 -25.61 -0.09 -0.72 16 5 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 6 C -0.12 -0.98 6.26 -25.08 -0.16 -1.13 16 7 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 8 C -0.15 -1.31 6.45 -25.07 -0.16 -1.47 16 9 C 0.11 1.02 3.22 -66.59 -0.21 0.81 16 10 H 0.09 0.77 7.81 -51.93 -0.41 0.37 16 11 N -0.65 -8.46 4.03 -106.81 -0.43 -8.89 16 12 C 0.04 0.50 4.55 -4.98 -0.02 0.48 16 13 C 0.51 9.22 7.71 -10.98 -0.08 9.14 16 14 O -0.51 -11.94 15.79 5.56 0.09 -11.86 16 15 N -0.60 -10.85 2.46 -175.06 -0.43 -11.28 16 16 C 0.25 5.83 5.16 -5.20 -0.03 5.80 16 17 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16 18 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.12 1.56 5.17 -4.04 -0.02 1.54 16 26 C -0.05 -0.54 6.03 -29.52 -0.18 -0.71 16 27 C 0.22 2.61 15.43 -20.78 -0.32 2.29 16 28 N -0.45 -6.52 18.53 42.13 0.78 -5.74 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.72 7.81 -51.92 -0.41 0.32 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 40 H 0.36 5.22 7.70 -39.29 -0.30 4.92 16 41 H 0.09 0.99 7.10 -51.93 -0.37 0.62 16 42 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 43 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 44 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 47 H 0.07 0.78 6.44 -51.92 -0.33 0.45 16 48 H 0.11 0.92 7.20 -51.93 -0.37 0.54 16 49 H 0.12 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 414.09 15.07 6.24 6.24 Total: -1.00 -32.59 414.09 -9.75 -42.34 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.39 Total: 1.43 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.25 Total: 0.41 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.66 Total: -50.76 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.07 Total: -4.04 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.59 -9.75 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348470614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.626 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds